BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071761.2.1
(638 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI136474.1|BI136474 F068P90Y Populus flower cDNA library... 54 7e-006
gb|BI136793.1|BI136793 F074P14Y Populus flower cDNA library... 54 7e-006
gb|BI138058.1|BI138058 F097P77Y Populus flower cDNA library... 54 7e-006
gb|BU825705.1|BU825705 UK112TB04 Populus apical shoot cDNA ... 54 7e-006
gb|CK091788.1|CK091788 F126P02.3pR Populus flower cDNA libr... 54 7e-006
gb|CK101501.1|CK101501 F074P14.5pR Populus flower cDNA libr... 54 7e-006
gb|CN520078.1|CN520078 GQ0108.B3_B17 GQ010 Populus trichoca... 54 7e-006
gb|CV235091.1|CV235091 WS01217.B21_K15 PT-GT-FL-A-3 Populus... 54 7e-006
gb|CV235313.1|CV235313 WS01218.B21_K03 PT-GT-FL-A-3 Populus... 54 7e-006
gb|CV242183.1|CV242183 WS02514.B21.1_F24 PT-MB-N-A-15 Popul... 54 7e-006
gb|CV259494.1|CV259494 WS02011.B21_I04 PTxN-IB-N-A-11 Popul... 54 7e-006
gb|BP934384.1|BP934384 BP934384 full-length enriched poplar... 54 7e-006
gb|BP934766.1|BP934766 BP934766 full-length enriched poplar... 54 7e-006
gb|DT473557.1|DT473557 WS0123.BR_A07 PT-GT-FL-A-3 Populus t... 54 7e-006
gb|DT476835.1|DT476835 WS01231.B21_A11 PT-GT-FL-A-3 Populus... 54 7e-006
gb|DT516250.1|DT516250 WS02430.B21_N09 PTxD-ICC-N-A-14 Popu... 54 7e-006
gb|DT525811.1|DT525811 WS02046.C21_F17 PTxN-IB-N-A-11 Popul... 54 7e-006
gb|AF041050.1|AF041050 Populus tremuloides clone Pt4CL2 4-c... 54 7e-006
gb|AF283553.1|AF283553 Populus balsamifera subsp. trichocar... 54 7e-006
gb|CK091314.1|CK091314 F074P14.3pR Populus flower cDNA libr... 50 1e-004
>gb|BI136474.1|BI136474 F068P90Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 393
Score = 54.0 bits (27), Expect = 7e-006
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 20 aaggagatcatcaagtacaagggcttccaggtgccgccggcggagctggaggcgctcct 78
||||| ||||| || | ||| ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 132 aaggaaatcataaaattcaaaggcttccaggtgccgcccgcggagcttgaggctctcct 190
>gb|BI136793.1|BI136793 F074P14Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 515
Score = 54.0 bits (27), Expect = 7e-006
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 20 aaggagatcatcaagtacaagggcttccaggtgccgccggcggagctggaggcgctcct 78
||||| ||||| || | ||| ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 132 aaggaaatcataaaattcaaaggcttccaggtgccgcccgcggagcttgaggctctcct 190
>gb|BI138058.1|BI138058 F097P77Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 453
Score = 54.0 bits (27), Expect = 7e-006
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 20 aaggagatcatcaagtacaagggcttccaggtgccgccggcggagctggaggcgctcct 78
||||| ||||| || | ||| ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 132 aaggaaatcataaaattcaaaggcttccaggtgccgcccgcggagcttgaggctctcct 190
>gb|BU825705.1|BU825705 UK112TB04 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 576
Score = 54.0 bits (27), Expect = 7e-006
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 20 aaggagatcatcaagtacaagggcttccaggtgccgccggcggagctggaggcgctcct 78
||||| ||||| || | ||| ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 242 aaggaaatcataaaattcaaaggcttccaggtgccgccagcggagcttgaggctctcct 300
>gb|CK091788.1|CK091788 F126P02.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F126P02 3', mRNA sequence
Length = 850
Score = 54.0 bits (27), Expect = 7e-006
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 20 aaggagatcatcaagtacaagggcttccaggtgccgccggcggagctggaggcgctcct 78
||||| ||||| || | ||| ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 565 aaggaaatcataaaattcaaaggcttccaggtgccgcccgcggagcttgaggctctcct 507
>gb|CK101501.1|CK101501 F074P14.5pR Populus flower cDNA library Populus trichocarpa cDNA
clone F074P14 5', mRNA sequence
Length = 424
Score = 54.0 bits (27), Expect = 7e-006
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 20 aaggagatcatcaagtacaagggcttccaggtgccgccggcggagctggaggcgctcct 78
||||| ||||| || | ||| ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 132 aaggaaatcataaaattcaaaggcttccaggtgccgcccgcggagcttgaggctctcct 190
>gb|CN520078.1|CN520078 GQ0108.B3_B17 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_B17 5', mRNA sequence
Length = 732
Score = 54.0 bits (27), Expect = 7e-006
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 20 aaggagatcatcaagtacaagggcttccaggtgccgccggcggagctggaggcgctcct 78
||||| ||||| || | ||| ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 104 aaggaaatcataaaattcaaaggcttccaggtgccgccagcggagcttgaggctctcct 162
>gb|CV235091.1|CV235091 WS01217.B21_K15 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01217_K15 3', mRNA sequence
Length = 718
Score = 54.0 bits (27), Expect = 7e-006
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 20 aaggagatcatcaagtacaagggcttccaggtgccgccggcggagctggaggcgctcct 78
||||| ||||| || | ||| ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 550 aaggaaatcataaaattcaaaggcttccaggtgccgccagcggagcttgaggctctcct 492
>gb|CV235313.1|CV235313 WS01218.B21_K03 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01218_K03 3', mRNA sequence
Length = 585
Score = 54.0 bits (27), Expect = 7e-006
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 20 aaggagatcatcaagtacaagggcttccaggtgccgccggcggagctggaggcgctcct 78
||||| ||||| || | ||| ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 466 aaggaaatcataaaattcaaaggcttccaggtgccgcccgcggagcttgaggctctcct 408
>gb|CV242183.1|CV242183 WS02514.B21.1_F24 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02514_F24 3', mRNA sequence
Length = 876
Score = 54.0 bits (27), Expect = 7e-006
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 20 aaggagatcatcaagtacaagggcttccaggtgccgccggcggagctggaggcgctcct 78
||||| ||||| || | ||| ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 538 aaggaaatcataaaattcaaaggcttccaggtgccgcccgcggagcttgaggctctcct 480
>gb|CV259494.1|CV259494 WS02011.B21_I04 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02011_I04 3', mRNA sequence
Length = 733
Score = 54.0 bits (27), Expect = 7e-006
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 20 aaggagatcatcaagtacaagggcttccaggtgccgccggcggagctggaggcgctcct 78
||||| ||||| || | ||| ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 518 aaggaaatcataaaattcaaaggcttccaggtgccgccagcggagcttgaggctctcct 460
>gb|BP934384.1|BP934384 BP934384 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-064_I21.r 3', mRNA sequence
Length = 633
Score = 54.0 bits (27), Expect = 7e-006
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 20 aaggagatcatcaagtacaagggcttccaggtgccgccggcggagctggaggcgctcct 78
||||| ||||| || | ||| ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 462 aaggaaatcataaaattcaaaggcttccaggtgccgccagcggagcttgaggctctcct 404
>gb|BP934766.1|BP934766 BP934766 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-069_D17.r 3', mRNA sequence
Length = 573
Score = 54.0 bits (27), Expect = 7e-006
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 20 aaggagatcatcaagtacaagggcttccaggtgccgccggcggagctggaggcgctcct 78
||||| ||||| || | ||| ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 463 aaggaaatcataaaattcaaaggcttccaggtgccgccagcggagcttgaggctctcct 405
>gb|DT473557.1|DT473557 WS0123.BR_A07 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0123_A07 5', mRNA sequence
Length = 695
Score = 54.0 bits (27), Expect = 7e-006
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 20 aaggagatcatcaagtacaagggcttccaggtgccgccggcggagctggaggcgctcct 78
||||| ||||| || | ||| ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 361 aaggaaatcataaaattcaaaggcttccaggtgccgcccgcggagcttgaggctctcct 419
>gb|DT476835.1|DT476835 WS01231.B21_A11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01231_A11 3', mRNA sequence
Length = 860
Score = 54.0 bits (27), Expect = 7e-006
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 20 aaggagatcatcaagtacaagggcttccaggtgccgccggcggagctggaggcgctcct 78
||||| ||||| || | ||| ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 399 aaggaaatcataaaattcaaaggcttccaggtgccgcccgcggagcttgaggctctcct 341
>gb|DT516250.1|DT516250 WS02430.B21_N09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02430_N09 3', mRNA sequence
Length = 795
Score = 54.0 bits (27), Expect = 7e-006
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 20 aaggagatcatcaagtacaagggcttccaggtgccgccggcggagctggaggcgctcct 78
||||| ||||| || | ||| ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 575 aaggaaatcataaaattcaaaggcttccaggtgccgccagcggagcttgaggctctcct 517
>gb|DT525811.1|DT525811 WS02046.C21_F17 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02046_F17 3', mRNA sequence
Length = 862
Score = 54.0 bits (27), Expect = 7e-006
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 20 aaggagatcatcaagtacaagggcttccaggtgccgccggcggagctggaggcgctcct 78
||||| ||||| || | ||| ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 507 aaggaaatcataaaattcaaaggcttccaggtgccgccagcggagcttgaggctctcct 449
>gb|AF041050.1|AF041050 Populus tremuloides clone Pt4CL2 4-coumarate:CoA ligase mRNA,
complete cds
Length = 1713
Score = 54.0 bits (27), Expect = 7e-006
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 20 aaggagatcatcaagtacaagggcttccaggtgccgccggcggagctggaggcgctcct 78
||||| ||||| || | ||| ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 1390 aaggaaatcataaaattcaaaggcttccaggtgccgccagcggagcttgaggctctcct 1448
>gb|AF283553.1|AF283553 Populus balsamifera subsp. trichocarpa x Populus deltoides
4-coumarate:CoA ligase 4 mRNA, complete cds
Length = 1917
Score = 54.0 bits (27), Expect = 7e-006
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 20 aaggagatcatcaagtacaagggcttccaggtgccgccggcggagctggaggcgctcct 78
||||| ||||| || | ||| ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 1390 aaggaaatcataaaattcaaaggcttccaggtgccgccagcggagcttgaggctctcct 1448
>gb|CK091314.1|CK091314 F074P14.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F074P14 3', mRNA sequence
Length = 439
Score = 50.1 bits (25), Expect = 1e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 20 aaggagatcatcaagtacaagggcttccaggtgccgccggcggagctggaggc 72
||||| ||||| || | ||| ||||||||||||||||| |||||||| |||||
Sbjct: 419 aaggaaatcataaaattcaaaggcttccaggtgccgcccgcggagcttgaggc 367
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 62,331
Number of Sequences: 369679
Number of extensions: 62331
Number of successful extensions: 15993
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15954
Number of HSP's gapped (non-prelim): 39
length of query: 638
length of database: 203,408,664
effective HSP length: 19
effective length of query: 619
effective length of database: 196,384,763
effective search space: 121562168297
effective search space used: 121562168297
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)