BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071743.2.1
(586 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU891571.1|BU891571 P052C08 Populus petioles cDNA librar... 42 0.023
gb|CX176565.1|CX176565 B12_69-45_04.ab1 leaf inoculated wit... 38 0.36
>gb|BU891571.1|BU891571 P052C08 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 665
Score = 42.1 bits (21), Expect = 0.023
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 500 ccaaaggtgtgctgaaactaatgaaggtagaaggtctaacaatttatcatgtgaagagcc 559
||||||||||| | || || ||||| || |||||||| || || ||||||||||| ||||
Sbjct: 45 ccaaaggtgtgttaaagcttatgaacgttgaaggtctgaccatctatcatgtgaaaagcc 104
Query: 560 a 560
|
Sbjct: 105 a 105
>gb|CX176565.1|CX176565 B12_69-45_04.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 556
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 316 tcacttccagtatcatctt 334
|||||||||||||||||||
Sbjct: 416 tcacttccagtatcatctt 398
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 75,824
Number of Sequences: 369679
Number of extensions: 75824
Number of successful extensions: 20721
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20719
Number of HSP's gapped (non-prelim): 2
length of query: 586
length of database: 203,408,664
effective HSP length: 19
effective length of query: 567
effective length of database: 196,384,763
effective search space: 111350160621
effective search space used: 111350160621
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)