BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3071667.2.1
         (597 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AJ774952.1|AJ774952  AJ774952 Populus euphratica shoot 3-...    44   0.006
gb|CV265001.1|CV265001  WS02026.B21_B01 PTxN-IB-N-A-11 Popul...    44   0.006
gb|DT523819.1|DT523819  WS02040.B21_L16 PTxN-IB-N-A-11 Popul...    44   0.006
gb|CA926209.1|CA926209  MTU6CR.P11.C07 Aspen root cDNA Libra...    42   0.024
gb|CB240336.1|CB240336  PopSC00315 Poplar SC cDNA library Po...    38   0.37 
gb|CN524579.1|CN524579  GQ015M13.T3_C09 GQ015 Populus tricho...    38   0.37 
gb|CV276058.1|CV276058  WS0178.B21.1_H22 PTxD-NR-A-8 Populus...    38   0.37 
gb|CX167639.1|CX167639  F08_69-6_12.ab1 leaf inoculated with...    38   0.37 

>gb|AJ774952.1|AJ774952 AJ774952 Populus euphratica shoot 3-6 months Populus euphratica
           cDNA clone P0000300026B08F1, mRNA sequence
          Length = 566

 Score = 44.1 bits (22), Expect = 0.006
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 548 cctcatcaaccgtcttgaacttcatgagggacat 581
           |||||||||  ||||||||||||||||| |||||
Sbjct: 111 cctcatcaattgtcttgaacttcatgagtgacat 78



>gb|CV265001.1|CV265001 WS02026.B21_B01 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
           cDNA clone WS02026_B01 3', mRNA sequence
          Length = 907

 Score = 44.1 bits (22), Expect = 0.006
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 548 cctcatcaaccgtcttgaacttcatgagggacat 581
           |||||||||  ||||||||||||||||| |||||
Sbjct: 517 cctcatcaattgtcttgaacttcatgagtgacat 550



>gb|DT523819.1|DT523819 WS02040.B21_L16 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
           cDNA clone WS02040_L16 3', mRNA sequence
          Length = 843

 Score = 44.1 bits (22), Expect = 0.006
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 548 cctcatcaaccgtcttgaacttcatgagggacat 581
           |||||||||  ||||||||||||||||| |||||
Sbjct: 435 cctcatcaattgtcttgaacttcatgagtgacat 468



>gb|CA926209.1|CA926209 MTU6CR.P11.C07 Aspen root cDNA Library Populus tremuloides cDNA,
           mRNA sequence
          Length = 550

 Score = 42.1 bits (21), Expect = 0.024
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 559 gtcttgaacttcatgagggacatgacggg 587
           ||||||||||||||||| ||||| |||||
Sbjct: 167 gtcttgaacttcatgagtgacattacggg 139



>gb|CB240336.1|CB240336 PopSC00315 Poplar SC cDNA library Populus alba x Populus tremula
           var. glandulosa cDNA clone PopSC00315, mRNA sequence
          Length = 444

 Score = 38.2 bits (19), Expect = 0.37
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 559 gtcttgaacttcatgagggacat 581
           ||||||||||||||||| |||||
Sbjct: 220 gtcttgaacttcatgagtgacat 198



>gb|CN524579.1|CN524579 GQ015M13.T3_C09 GQ015 Populus trichocarpa x Populus deltoides cDNA
           clone GQ015M13_C09 5', mRNA sequence
          Length = 510

 Score = 38.2 bits (19), Expect = 0.37
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 559 gtcttgaacttcatgagggacat 581
           ||||||||||||||||| |||||
Sbjct: 49  gtcttgaacttcatgagtgacat 27



>gb|CV276058.1|CV276058 WS0178.B21.1_H22 PTxD-NR-A-8 Populus trichocarpa x Populus
           deltoides cDNA clone WS0178_H22 3', mRNA sequence
          Length = 831

 Score = 38.2 bits (19), Expect = 0.37
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 559 gtcttgaacttcatgagggacat 581
           ||||||||||||||||| |||||
Sbjct: 553 gtcttgaacttcatgagtgacat 575



>gb|CX167639.1|CX167639 F08_69-6_12.ab1 leaf inoculated with Marssonia pathogen of Populus
           deltoides Populus deltoides cDNA, mRNA sequence
          Length = 625

 Score = 38.2 bits (19), Expect = 0.37
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 559 gtcttgaacttcatgagggacat 581
           ||||||||||||||||| |||||
Sbjct: 606 gtcttgaacttcatgagtgacat 584



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 47,057
Number of Sequences: 369679
Number of extensions: 47057
Number of successful extensions: 12927
Number of sequences better than  0.5: 8
Number of HSP's better than  0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12912
Number of HSP's gapped (non-prelim): 15
length of query: 597
length of database: 203,408,664
effective HSP length: 19
effective length of query: 578
effective length of database: 196,384,763
effective search space: 113510393014
effective search space used: 113510393014
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)