BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3070703.2.1
(1214 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU820611.1|BU820611 UB12CPA10 Populus tremula cambium cD... 107 1e-021
gb|DN500074.1|DN500074 UB12CPA10.5pR Populus active cambium... 107 1e-021
gb|DV463139.1|DV463139 MTUNUL1.P12.C01 NUL Populus fremonti... 92 6e-017
gb|DT517331.1|DT517331 WS02434.B21_A05 PTxD-ICC-N-A-14 Popu... 80 2e-013
gb|BI129503.1|BI129503 G091P61Y Populus cambium cDNA librar... 74 1e-011
gb|CK110281.1|CK110281 N055B12 Populus bark cDNA library Po... 74 1e-011
gb|BU814412.1|BU814412 N029C01 Populus bark cDNA library Po... 70 2e-010
gb|BI138525.1|BI138525 F108P50Y Populus flower cDNA library... 68 9e-010
gb|CB240549.1|CB240549 PopSC00580 Poplar SC cDNA library Po... 66 3e-009
gb|AJ774571.1|AJ774571 AJ774571 Populus euphratica shoot 3-... 66 3e-009
gb|DT489454.1|DT489454 WS02542.B21_E12 PT-MB-N-A-15 Populus... 66 3e-009
gb|AC149295.1| Populus trichocarpa clone Pop1-008L01, compl... 64 1e-008
gb|AC149424.1| Populus trichocarpa clone Pop1-011N15, compl... 64 1e-008
gb|AC149425.1| Populus trichocarpa clone Pop1-041F22, compl... 64 1e-008
gb|AC149426.1| Populus trichocarpa clone Pop1-053A03, compl... 64 1e-008
gb|BU819793.1|BU819793 UA47BPF05 Populus tremula cambium cD... 58 8e-007
gb|CA934844.1|CA934844 MTU5TS.P24.F11 Aspen stem cDNA Libra... 58 8e-007
gb|DT477642.1|DT477642 WS02520.BR_I18 PT-MB-N-A-15 Populus ... 58 8e-007
gb|DN490105.1|DN490105 UB12CPA10.3pR Populus active cambium... 56 3e-006
gb|CK092088.1|CK092088 G065P17.3pR Populus tension wood cDN... 46 0.003
gb|BI127738.1|BI127738 G065P17Y Populus cambium cDNA librar... 44 0.012
gb|BU817337.1|BU817337 UA15CPG03 Populus tremula cambium cD... 44 0.012
gb|CF232526.1|CF232526 PtaJXO0011E5E0509 Poplar cDNA librar... 44 0.012
gb|DT517590.1|DT517590 WS02434.B21_L22 PTxD-ICC-N-A-14 Popu... 44 0.012
gb|BI131118.1|BI131118 G115P63Y Populus cambium cDNA librar... 40 0.19
gb|BU809199.1|BU809199 UL54PH12 Populus leaf cDNA library P... 40 0.19
gb|CK103411.1|CK103411 G115P63.5pR Populus tension wood cDN... 40 0.19
gb|CX655000.1|CX655000 PO01003F05 Poplar SC cDNA library Po... 40 0.19
gb|DT507274.1|DT507274 WS02417.BR_N05 PTxD-ICC-N-A-14 Popul... 40 0.19
gb|DT511911.1|DT511911 WS02417.B21_N05 PTxD-ICC-N-A-14 Popu... 40 0.19
>gb|BU820611.1|BU820611 UB12CPA10 Populus tremula cambium cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 504
Score = 107 bits (54), Expect = 1e-021
Identities = 114/134 (85%)
Strand = Plus / Minus
Query: 1042 gatgttatgttgtggtagtacctgagtggctccattgtgctctcaccaacataagcaaca 1101
||||| |||||||| || || ||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 359 gatgtgatgttgtgataatatctgagaggctccattgtactctcaccaacatatgcaaca 300
Query: 1102 gcagcaaagtgcataacagcgtcaaatgcattctccgaaaatattttcttcacagctttg 1161
||||| || ||||| ||||| |||||||||||||| ||| ||||| || ||||||||
Sbjct: 299 gcagcgaaatgcatcacagcatcaaatgcattctcaacaaagattttgtttacagctttt 240
Query: 1162 gcatcgcctaagtc 1175
||||| || |||||
Sbjct: 239 gcatctcccaagtc 226
>gb|DN500074.1|DN500074 UB12CPA10.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB12CPA10 5', mRNA sequence
Length = 733
Score = 107 bits (54), Expect = 1e-021
Identities = 114/134 (85%)
Strand = Plus / Minus
Query: 1042 gatgttatgttgtggtagtacctgagtggctccattgtgctctcaccaacataagcaaca 1101
||||| |||||||| || || ||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 359 gatgtgatgttgtgataatatctgagaggctccattgtactctcaccaacatatgcaaca 300
Query: 1102 gcagcaaagtgcataacagcgtcaaatgcattctccgaaaatattttcttcacagctttg 1161
||||| || ||||| ||||| |||||||||||||| ||| ||||| || ||||||||
Sbjct: 299 gcagcgaaatgcatcacagcatcaaatgcattctcaacaaagattttgtttacagctttt 240
Query: 1162 gcatcgcctaagtc 1175
||||| || |||||
Sbjct: 239 gcatctcccaagtc 226
>gb|DV463139.1|DV463139 MTUNUL1.P12.C01 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 623
Score = 91.7 bits (46), Expect = 6e-017
Identities = 112/134 (83%)
Strand = Plus / Minus
Query: 1042 gatgttatgttgtggtagtacctgagtggctccattgtgctctcaccaacataagcaaca 1101
||||| |||||||| || || ||||| || |||||||| || ||||||||||| ||||||
Sbjct: 589 gatgtgatgttgtgataatatctgagaggttccattgtactttcaccaacatatgcaaca 530
Query: 1102 gcagcaaagtgcataacagcgtcaaatgcattctccgaaaatattttcttcacagctttg 1161
||||| || ||||| ||||| ||||||||||| || | ||| ||||| || ||||||||
Sbjct: 529 gcagcgaaatgcatcacagcatcaaatgcattttcagcaaagattttgtttacagctttt 470
Query: 1162 gcatcgcctaagtc 1175
||||| || |||||
Sbjct: 469 gcatctcccaagtc 456
>gb|DT517331.1|DT517331 WS02434.B21_A05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02434_A05 3', mRNA sequence
Length = 281
Score = 79.8 bits (40), Expect = 2e-013
Identities = 103/124 (83%)
Strand = Plus / Plus
Query: 713 ctgcatcaaagcaagcaccggatatccgtccatgctcgcgtagctctggccttggagctt 772
|||||||||| |||||||| || || || |||||||| || ||||| || | ||||||||
Sbjct: 1 ctgcatcaaaacaagcaccagagattcggccatgctcacgaagctcaggtcgtggagctt 60
Query: 773 ctcctagccgtccctctgggtctgatccaatcacgttgaagtatcttaagatcatgacag 832
| |||| | ||| || ||||| || ||||| || ||||||||||||| |||||||||||
Sbjct: 61 cccctaatcttccttccgggtcagacccaataacattgaagtatcttaggatcatgacag 120
Query: 833 ccat 836
||||
Sbjct: 121 ccat 124
>gb|BI129503.1|BI129503 G091P61Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 466
Score = 73.8 bits (37), Expect = 1e-011
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 711 agctgcatcaaagcaagcaccggatatccgtccatgctcgcgtagctctggccttggagc 770
||||||||| || ||||||||||| || ||||||||||| || || || || || |||||
Sbjct: 337 agctgcatcgaaacaagcaccggaaattcgtccatgctcacgcagttcaggtctaggagc 278
Query: 771 ttctcctagccgtccctctgggtctgatccaatcacgttgaagtatcttaagatcat 827
|| |||| || || ||||| |||||||||||||| ||||||||||| || |||||
Sbjct: 277 ctcacctaacctgccttctggatctgatccaatcacattgaagtatctcaatatcat 221
Score = 52.0 bits (26), Expect = 5e-005
Identities = 128/162 (79%)
Strand = Plus / Minus
Query: 861 aaaatctaagatgatgtcctccgccatcttctttgccttaccatatggattgataggatt 920
|||||| | |||||| || || ||||||||||| || || ||||||||||| || ||
Sbjct: 196 aaaatcaaggatgatatcttctgccatcttcttagcttttccatatggattaatgggtac 137
Query: 921 ctgaggagttgtttctacaataggcatcgtatcaggttcaccataggttgcacacgtact 980
||| |||||| ||| ||| |||||| | ||||| || ||||| |||||||| |||||
Sbjct: 136 ctgtggagttacttcagtaatcggcatcttttcaggctccccatatgttgcacatgtact 77
Query: 981 cgagtaaatcagagtatttacattatatgctgccattgcctc 1022
|| || |||| ||| ||||||| || ||| |||||||||||
Sbjct: 76 tgaatatatcaaagtctttacatcatttgcagccattgcctc 35
>gb|CK110281.1|CK110281 N055B12 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N055B12 5', mRNA sequence
Length = 885
Score = 73.8 bits (37), Expect = 1e-011
Identities = 94/113 (83%)
Strand = Plus / Minus
Query: 715 gcatcaaagcaagcaccggatatccgtccatgctcgcgtagctctggccttggagcttct 774
|||||||| |||||||| || | |||||||||||||| || || || || ||||| ||
Sbjct: 298 gcatcaaaacaagcaccagaagttcgtccatgctcgcgcagttcaggtctaggagcctca 239
Query: 775 cctagccgtccctctgggtctgatccaatcacgttgaagtatcttaagatcat 827
|||| || ||| ||||| |||||||||||||| ||||||||||| || |||||
Sbjct: 238 cctaaccttccatctggatctgatccaatcacattgaagtatctcaatatcat 186
Score = 58.0 bits (29), Expect = 8e-007
Identities = 128/161 (79%)
Strand = Plus / Minus
Query: 499 gttgccttcttgcaagcttctacaaactcagtcactgatctaccttggcctgttccgaca 558
|||||||| || || |||| ||||||||| | ||||||||||| || || || |||
Sbjct: 514 gttgcctttttacatgcttgtacaaactccttgactgatctacccattccagtgccaaca 455
Query: 559 ttgtagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatctaca 618
||||||||||||||||| || ||| || || |||| ||||| || |||||||| |||
Sbjct: 454 ttgtagattccaactttcccaggcattgccttttcaagtgctttaacatgagcatcgaca 395
Query: 619 agatctgtgacatcgatgtagtctctaacgcaagttccatc 659
||||| || |||||||| || ||||| | |||||||||||
Sbjct: 394 agatcagtaacatcgatataatctcttatacaagttccatc 354
Score = 42.1 bits (21), Expect = 0.049
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 870 gatgatgtcctccgccatcttctttgccttaccatatggattgat 914
|||||| || || ||||||||||| || || ||||||||||||||
Sbjct: 152 gatgatatcttctgccatcttcttagcttttccatatggattgat 108
>gb|BU814412.1|BU814412 N029C01 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 349
Score = 69.9 bits (35), Expect = 2e-010
Identities = 152/191 (79%)
Strand = Plus / Minus
Query: 943 ggcatcgtatcaggttcaccataggttgcacacgtactcgagtaaatcagagtatttaca 1002
|||||| | ||||| || ||||| |||||||| ||||| || || |||| ||| ||||||
Sbjct: 246 ggcatcttttcaggctccccatatgttgcacatgtacttgaatatatcaaagtctttaca 187
Query: 1003 ttatatgctgccattgcctcaagaactgtcaatgtgttcgatgttatgttgtggtagtac 1062
| || ||| ||||||||||| | ||| ||| || || ||||| || ||||| || |||
Sbjct: 186 tcatttgcagccattgcctccaacactaccaaggtatttgatgtgatattgtgataatac 127
Query: 1063 ctgagtggctccattgtgctctcaccaacataagcaacagcagcaaagtgcataacagcg 1122
| || || ||||| ||||| || |||||||| ||||| || ||||| ||||| |||||
Sbjct: 126 ttcagggggtccatggtgctttccccaacatatgcaactgctgcaaaatgcatcacagca 67
Query: 1123 tcaaatgcatt 1133
|||||||||||
Sbjct: 66 tcaaatgcatt 56
>gb|BI138525.1|BI138525 F108P50Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 410
Score = 67.9 bits (34), Expect = 9e-010
Identities = 202/258 (78%)
Strand = Plus / Plus
Query: 939 aataggcatcgtatcaggttcaccataggttgcacacgtactcgagtaaatcagagtatt 998
|||||||||| | ||||| || ||||| |||||||| || || || || |||| ||| ||
Sbjct: 135 aataggcatcttttcaggctccccatatgttgcacatgtgcttgaatatatcaaagtctt 194
Query: 999 tacattatatgctgccattgcctcaagaactgtcaatgtgttcgatgttatgttgtggta 1058
||||| || ||| ||||||| ||| | ||| ||| || || ||||| |||||||| ||
Sbjct: 195 tacatcatttgcagccattgactccaacactaccaaggtatttgatgtaatgttgtgata 254
Query: 1059 gtacctgagtggctccattgtgctctcaccaacataagcaacagcagcaaagtgcataac 1118
|||| | || || | || ||||| || |||||||| ||||| || ||||| ||||| ||
Sbjct: 255 gtacttaagggggtacacggtgctttccccaacatatgcaactgctgcaaaatgcatcac 314
Query: 1119 agcgtcaaatgcattctccgaaaatattttcttcacagctttggcatcgcctaagtcagc 1178
||| ||||||||||| | ||||| || | || |||| ||| | || || ||||||||
Sbjct: 315 agcatcaaatgcattttgtgaaaagatgctgttaacagttttaggctctcccaagtcagc 374
Query: 1179 ataaataaactgaagcct 1196
||| ||||||||||||||
Sbjct: 375 atatataaactgaagcct 392
Score = 40.1 bits (20), Expect = 0.19
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 796 gatccaatcacgttgaagtatcttaagatcat 827
||||||||||| ||||||||||| || |||||
Sbjct: 1 gatccaatcacattgaagtatctcaatatcat 32
>gb|CB240549.1|CB240549 PopSC00580 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PopSC00580, mRNA sequence
Length = 478
Score = 65.9 bits (33), Expect = 3e-009
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 499 gttgccttcttgcaagcttctacaaactcagtcactgatctaccttggcctgttccgaca 558
||||||||||| || ||||| |||||||| ||||||||||||||| || ||||| |||
Sbjct: 423 gttgccttcttacatgcttcgacaaactccttcactgatctaccttttccagttccaaca 364
Query: 559 ttgtagattccaacttt 575
||||| || ||||||||
Sbjct: 363 ttgtaaatgccaacttt 347
Score = 54.0 bits (27), Expect = 1e-005
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 766 ggagcttctcctagccgtccctctgggtctgatccaatcacgttgaagtatcttaagatc 825
|||||||| |||| || ||| ||||| || || ||||| | ||||||||||||| ||||
Sbjct: 156 ggagcttcccctaaccttccttctggatcagacccaataatattgaagtatcttaggatc 97
Query: 826 atgacagccat 836
|||||||||||
Sbjct: 96 atgacagccat 86
>gb|AJ774571.1|AJ774571 AJ774571 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300021H08F1, mRNA sequence
Length = 667
Score = 65.9 bits (33), Expect = 3e-009
Identities = 96/117 (82%)
Strand = Plus / Minus
Query: 711 agctgcatcaaagcaagcaccggatatccgtccatgctcgcgtagctctggccttggagc 770
||||||||| || ||||||||||| || |||||||| || || || || || || |||||
Sbjct: 182 agctgcatcgaaacaagcaccggaaattcgtccatgttcacgcagttcaggtctaggagc 123
Query: 771 ttctcctagccgtccctctgggtctgatccaatcacgttgaagtatcttaagatcat 827
|| |||| || || ||||| |||||||||||||| ||||||||||| || |||||
Sbjct: 122 ctcacctaacctgccatctggatctgatccaatcacattgaagtatctcaatatcat 66
Score = 48.1 bits (24), Expect = 8e-004
Identities = 102/128 (79%)
Strand = Plus / Minus
Query: 532 actgatctaccttggcctgttccgacattgtagattccaactttgcctggctgagcttta 591
||||||||||| | || || || |||||||||||||||||||| || ||| || ||
Sbjct: 361 actgatctaccctttccagtgccaacattgtagattccaactttaccaggcgttgccttt 302
Query: 592 ccaagagcttttacgtgagcatctacaagatctgtgacatcgatgtagtctctaacgcaa 651
|||| ||||| || |||||||| |||||||| || ||||| || || ||||| | |||
Sbjct: 301 tcaagtgctttcacatgagcatcaacaagatcagtaacatcaatataatctcttatacaa 242
Query: 652 gttccatc 659
||||||||
Sbjct: 241 gttccatc 234
>gb|DT489454.1|DT489454 WS02542.B21_E12 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02542_E12 3', mRNA sequence
Length = 934
Score = 65.9 bits (33), Expect = 3e-009
Identities = 93/113 (82%)
Strand = Plus / Plus
Query: 715 gcatcaaagcaagcaccggatatccgtccatgctcgcgtagctctggccttggagcttct 774
|||||||| |||||||| || || ||||| ||||| || || || || || ||||| ||
Sbjct: 649 gcatcaaaacaagcaccagaaattcgtccgtgctcacgcagttcaggtctaggagcctca 708
Query: 775 cctagccgtccctctgggtctgatccaatcacgttgaagtatcttaagatcat 827
|||| || ||| ||||| |||||||||||||| ||||||||||| || |||||
Sbjct: 709 cctaaccttccatctggatctgatccaatcacattgaagtatctcaatatcat 761
Score = 56.0 bits (28), Expect = 3e-006
Identities = 85/104 (81%)
Strand = Plus / Plus
Query: 556 acattgtagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatct 615
|||||||||||||||||||| || ||| || || |||| ||||| || ||||||||
Sbjct: 490 acattgtagattccaactttcccaggcattgccttttcaagtgctttaacatgagcatcg 549
Query: 616 acaagatctgtgacatcgatgtagtctctaacgcaagttccatc 659
|||||||| || |||||||| || ||||| | |||||||||||
Sbjct: 550 acaagatcagtaacatcgatataatctcttatacaagttccatc 593
>gb|AC149295.1| Populus trichocarpa clone Pop1-008L01, complete sequence
Length = 101981
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Minus
Query: 715 gcatcaaagcaagcaccggatatccgtccatgctcgcgtagctctggccttggagcttct 774
|||||||| |||||||| || || ||||| ||||| || || || || || ||||| ||
Sbjct: 35558 gcatcaaaacaagcaccagaaattcgtccgtgctcacgcagttcaggtctaggagcctca 35499
Query: 775 cctagccgtccctctgggtctgatccaatcacgttgaagtatct 818
|||| || ||| ||||| |||||||||||||| |||||||||||
Sbjct: 35498 cctaaccttccatctggatctgatccaatcacattgaagtatct 35455
Score = 56.0 bits (28), Expect = 3e-006
Identities = 85/104 (81%)
Strand = Plus / Minus
Query: 556 acattgtagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatct 615
|||||||||||||||||||| || ||| || || |||| ||||| || ||||||||
Sbjct: 36142 acattgtagattccaactttcccaggcattgccttttcaagtgctttaacatgagcatca 36083
Query: 616 acaagatctgtgacatcgatgtagtctctaacgcaagttccatc 659
|||||||| || |||||||| || ||||| | |||||||||||
Sbjct: 36082 acaagatcagtaacatcgatataatctcttatacaagttccatc 36039
Score = 48.1 bits (24), Expect = 8e-004
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 1078 gtgctctcaccaacataagcaacagcagcaaagtgcataacagcgtcaaatgcatt 1133
||||| || |||||||| ||||| || ||||| ||||| ||||| |||||||||||
Sbjct: 33796 gtgctttccccaacatatgcaactgctgcaaaatgcatcacagcatcaaatgcatt 33741
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1171 aagtcagcataaataaactgaagcct 1196
||||||||||| ||||||||||||||
Sbjct: 33599 aagtcagcatatataaactgaagcct 33574
>gb|AC149424.1| Populus trichocarpa clone Pop1-011N15, complete sequence
Length = 152544
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Minus
Query: 715 gcatcaaagcaagcaccggatatccgtccatgctcgcgtagctctggccttggagcttct 774
|||||||| |||||||| || || ||||| ||||| || || || || || ||||| ||
Sbjct: 84705 gcatcaaaacaagcaccagaaattcgtccgtgctcacgcagttcaggtctaggagcctca 84646
Query: 775 cctagccgtccctctgggtctgatccaatcacgttgaagtatct 818
|||| || ||| ||||| |||||||||||||| |||||||||||
Sbjct: 84645 cctaaccttccatctggatctgatccaatcacattgaagtatct 84602
Score = 56.0 bits (28), Expect = 3e-006
Identities = 85/104 (81%)
Strand = Plus / Minus
Query: 556 acattgtagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatct 615
|||||||||||||||||||| || ||| || || |||| ||||| || ||||||||
Sbjct: 85289 acattgtagattccaactttcccaggcattgccttttcaagtgctttaacatgagcatca 85230
Query: 616 acaagatctgtgacatcgatgtagtctctaacgcaagttccatc 659
|||||||| || |||||||| || ||||| | |||||||||||
Sbjct: 85229 acaagatcagtaacatcgatataatctcttatacaagttccatc 85186
Score = 48.1 bits (24), Expect = 8e-004
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 1078 gtgctctcaccaacataagcaacagcagcaaagtgcataacagcgtcaaatgcatt 1133
||||| || |||||||| ||||| || ||||| ||||| ||||| |||||||||||
Sbjct: 82943 gtgctttccccaacatatgcaactgctgcaaaatgcatcacagcatcaaatgcatt 82888
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1171 aagtcagcataaataaactgaagcct 1196
||||||||||| ||||||||||||||
Sbjct: 82746 aagtcagcatatataaactgaagcct 82721
>gb|AC149425.1| Populus trichocarpa clone Pop1-041F22, complete sequence
Length = 106128
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 715 gcatcaaagcaagcaccggatatccgtccatgctcgcgtagctctggccttggagcttct 774
|||||||| |||||||| || || ||||| ||||| || || || || || ||||| ||
Sbjct: 14205 gcatcaaaacaagcaccagaaattcgtccgtgctcacgcagttcaggtctaggagcctca 14264
Query: 775 cctagccgtccctctgggtctgatccaatcacgttgaagtatct 818
|||| || ||| ||||| |||||||||||||| |||||||||||
Sbjct: 14265 cctaaccttccatctggatctgatccaatcacattgaagtatct 14308
Score = 56.0 bits (28), Expect = 3e-006
Identities = 85/104 (81%)
Strand = Plus / Plus
Query: 556 acattgtagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatct 615
|||||||||||||||||||| || ||| || || |||| ||||| || ||||||||
Sbjct: 13621 acattgtagattccaactttcccaggcattgccttttcaagtgctttaacatgagcatca 13680
Query: 616 acaagatctgtgacatcgatgtagtctctaacgcaagttccatc 659
|||||||| || |||||||| || ||||| | |||||||||||
Sbjct: 13681 acaagatcagtaacatcgatataatctcttatacaagttccatc 13724
Score = 48.1 bits (24), Expect = 8e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 1078 gtgctctcaccaacataagcaacagcagcaaagtgcataacagcgtcaaatgcatt 1133
||||| || |||||||| ||||| || ||||| ||||| ||||| |||||||||||
Sbjct: 15967 gtgctttccccaacatatgcaactgctgcaaaatgcatcacagcatcaaatgcatt 16022
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1171 aagtcagcataaataaactgaagcct 1196
||||||||||| ||||||||||||||
Sbjct: 16164 aagtcagcatatataaactgaagcct 16189
>gb|AC149426.1| Populus trichocarpa clone Pop1-053A03, complete sequence
Length = 148552
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 715 gcatcaaagcaagcaccggatatccgtccatgctcgcgtagctctggccttggagcttct 774
|||||||| |||||||| || || ||||| ||||| || || || || || ||||| ||
Sbjct: 14851 gcatcaaaacaagcaccagaaattcgtccgtgctcacgcagttcaggtctaggagcctca 14910
Query: 775 cctagccgtccctctgggtctgatccaatcacgttgaagtatct 818
|||| || ||| ||||| |||||||||||||| |||||||||||
Sbjct: 14911 cctaaccttccatctggatctgatccaatcacattgaagtatct 14954
Score = 56.0 bits (28), Expect = 3e-006
Identities = 85/104 (81%)
Strand = Plus / Plus
Query: 556 acattgtagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatct 615
|||||||||||||||||||| || ||| || || |||| ||||| || ||||||||
Sbjct: 14267 acattgtagattccaactttcccaggcattgccttttcaagtgctttaacatgagcatca 14326
Query: 616 acaagatctgtgacatcgatgtagtctctaacgcaagttccatc 659
|||||||| || |||||||| || ||||| | |||||||||||
Sbjct: 14327 acaagatcagtaacatcgatataatctcttatacaagttccatc 14370
Score = 48.1 bits (24), Expect = 8e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 1078 gtgctctcaccaacataagcaacagcagcaaagtgcataacagcgtcaaatgcatt 1133
||||| || |||||||| ||||| || ||||| ||||| ||||| |||||||||||
Sbjct: 16613 gtgctttccccaacatatgcaactgctgcaaaatgcatcacagcatcaaatgcatt 16668
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1171 aagtcagcataaataaactgaagcct 1196
||||||||||| ||||||||||||||
Sbjct: 16810 aagtcagcatatataaactgaagcct 16835
>gb|BU819793.1|BU819793 UA47BPF05 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 609
Score = 58.0 bits (29), Expect = 8e-007
Identities = 80/97 (82%)
Strand = Plus / Minus
Query: 715 gcatcaaagcaagcaccggatatccgtccatgctcgcgtagctctggccttggagcttct 774
|||||||| |||||||| || || ||||||||||| || || || || || ||||| ||
Sbjct: 123 gcatcaaaacaagcaccagaaattcgtccatgctcacgcagttcaggtctaggagcctca 64
Query: 775 cctagccgtccctctgggtctgatccaatcacgttga 811
|||| || ||| ||||| |||||||||||||| ||||
Sbjct: 63 cctaaccttccatctggatctgatccaatcacattga 27
Score = 48.1 bits (24), Expect = 8e-004
Identities = 84/104 (80%)
Strand = Plus / Minus
Query: 556 acattgtagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatct 615
|||||||||||||||||||| || ||| || || |||| ||||| || ||||||||
Sbjct: 282 acattgtagattccaactttcccaggcattgccttttcaagtgctttaacatgagcatca 223
Query: 616 acaagatctgtgacatcgatgtagtctctaacgcaagttccatc 659
|||||||| || || ||||| || ||||| | |||||||||||
Sbjct: 222 acaagatcagtaacgtcgatataatctcttatacaagttccatc 179
>gb|CA934844.1|CA934844 MTU5TS.P24.F11 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 385
Score = 58.0 bits (29), Expect = 8e-007
Identities = 92/113 (81%)
Strand = Plus / Plus
Query: 715 gcatcaaagcaagcaccggatatccgtccatgctcgcgtagctctggccttggagcttct 774
|||||||| ||||| || || || ||||| ||||| || || || || || ||||| ||
Sbjct: 194 gcatcaaaacaagcgccagaaattcgtccgtgctcacgcagttcaggtctaggagcctca 253
Query: 775 cctagccgtccctctgggtctgatccaatcacgttgaagtatcttaagatcat 827
|||| || ||| ||||| |||||||||||||| ||||||||||| || |||||
Sbjct: 254 cctaaccttccatctggatctgatccaatcacattgaagtatctcaatatcat 306
Score = 56.0 bits (28), Expect = 3e-006
Identities = 85/104 (81%)
Strand = Plus / Plus
Query: 556 acattgtagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatct 615
|||||||||||||||||||| || ||| || || |||| ||||| || ||||||||
Sbjct: 35 acattgtagattccaactttcccaggcattgccttttcaagtgctttaacatgagcatca 94
Query: 616 acaagatctgtgacatcgatgtagtctctaacgcaagttccatc 659
|||||||| || |||||||| || ||||| | |||||||||||
Sbjct: 95 acaagatcagtaacatcgatataatctcttatacaagttccatc 138
>gb|DT477642.1|DT477642 WS02520.BR_I18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_I18 5', mRNA sequence
Length = 809
Score = 58.0 bits (29), Expect = 8e-007
Identities = 128/161 (79%)
Strand = Plus / Minus
Query: 1042 gatgttatgttgtggtagtacctgagtggctccattgtgctctcaccaacataagcaaca 1101
||||| || ||||| |||||| | || || ||||| ||||| || |||||||| |||||
Sbjct: 802 gatgtgatattgtgatagtacttcaggggttccatggtgctttccccaacatatgcaact 743
Query: 1102 gcagcaaagtgcataacagcgtcaaatgcattctccgaaaatattttcttcacagctttg 1161
|| ||||| ||||| ||||| ||||||||||| | || || || | || |||| |||
Sbjct: 742 gccgcaaaatgcatcacagcatcaaatgcattttgtgagaagataatgttaacagtttta 683
Query: 1162 gcatcgcctaagtcagcataaataaactgaagccttccggg 1202
| ||| || | ||||||||| |||||||||||||| |||||
Sbjct: 682 ggatctcccaggtcagcatatataaactgaagcctcccggg 642
>gb|DN490105.1|DN490105 UB12CPA10.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB12CPA10 3', mRNA sequence
Length = 702
Score = 56.0 bits (28), Expect = 3e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 1063 ctgagtggctccattgtgctctcaccaacataagcaacag 1102
||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 663 ctgagaggctccattgtactctcaccaacatatgcaacag 702
>gb|CK092088.1|CK092088 G065P17.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G065P17 3', mRNA sequence
Length = 834
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 711 agctgcatcaaagcaagcaccggatatccgtccatgctc 749
||||||||| || ||||||||||| || |||||||||||
Sbjct: 697 agctgcatcgaaacaagcaccggaaattcgtccatgctc 735
Score = 40.1 bits (20), Expect = 0.19
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 532 actgatctaccttggcctgttccgacattgtagattccaacttt 575
||||||||||| | || || || ||||||||||||||||||||
Sbjct: 518 actgatctaccctttccagtgccaacattgtagattccaacttt 561
>gb|BI127738.1|BI127738 G065P17Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 471
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1173 gtcagcataaataaactgaagccttccggg 1202
||||||||| |||||||||||||| |||||
Sbjct: 469 gtcagcatatataaactgaagcctcccggg 440
>gb|BU817337.1|BU817337 UA15CPG03 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 438
Score = 44.1 bits (22), Expect = 0.012
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 299 ccttttgagctctgaatcaggc 320
||||||||||||||||||||||
Sbjct: 164 ccttttgagctctgaatcaggc 185
>gb|CF232526.1|CF232526 PtaJXO0011E5E0509 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 709
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1173 gtcagcataaataaactgaagccttccggg 1202
||||||||| |||||||||||||| |||||
Sbjct: 629 gtcagcatatataaactgaagcctcccggg 600
>gb|DT517590.1|DT517590 WS02434.B21_L22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02434_L22 3', mRNA sequence
Length = 484
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 382 agatccgtgtattgggctgtccagtt 407
|||||||||||||| |||||||||||
Sbjct: 323 agatccgtgtattgcgctgtccagtt 348
>gb|BI131118.1|BI131118 G115P63Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 550
Score = 40.1 bits (20), Expect = 0.19
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 532 actgatctaccttggcctgttccgacattgtagattccaacttt 575
||||||||||| | || || || ||||||||||||||||||||
Sbjct: 127 actgatctaccctttccagtgccaacattgtagattccaacttt 84
>gb|BU809199.1|BU809199 UL54PH12 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 520
Score = 40.1 bits (20), Expect = 0.19
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 532 actgatctaccttggcctgttccgacattgtagattccaacttt 575
||||||||||| | || || || ||||||||||||||||||||
Sbjct: 213 actgatctaccctttccagtgccaacattgtagattccaacttt 170
>gb|CK103411.1|CK103411 G115P63.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G115P63 5', mRNA sequence
Length = 267
Score = 40.1 bits (20), Expect = 0.19
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 532 actgatctaccttggcctgttccgacattgtagattccaacttt 575
||||||||||| | || || || ||||||||||||||||||||
Sbjct: 126 actgatctaccctttccagtgccaacattgtagattccaacttt 83
>gb|CX655000.1|CX655000 PO01003F05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01003F05 5', mRNA sequence
Length = 649
Score = 40.1 bits (20), Expect = 0.19
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 532 actgatctaccttggcctgttccgacattgtagattccaacttt 575
||||||||||| | || || || ||||||||||||||||||||
Sbjct: 131 actgatctaccctttccagtgccaacattgtagattccaacttt 88
>gb|DT507274.1|DT507274 WS02417.BR_N05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_N05 5', mRNA sequence
Length = 558
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 556 acattgtagattccaacttt 575
||||||||||||||||||||
Sbjct: 42 acattgtagattccaacttt 23
>gb|DT511911.1|DT511911 WS02417.B21_N05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_N05 3', mRNA sequence
Length = 558
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 556 acattgtagattccaacttt 575
||||||||||||||||||||
Sbjct: 517 acattgtagattccaacttt 536
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 152,324
Number of Sequences: 369679
Number of extensions: 152324
Number of successful extensions: 44639
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44432
Number of HSP's gapped (non-prelim): 190
length of query: 1214
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1195
effective length of database: 196,384,763
effective search space: 234679791785
effective search space used: 234679791785
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)