BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3062418.2.1
         (851 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CX654585.1|CX654585  PO02016G03 Poplar SC cDNA library Po...    56   2e-006
gb|CX174034.1|CX174034  A08_69-64_02.ab1 leaf inoculated wit...    48   6e-004
gb|CK097994.1|CK097994  A001P37.5pR Hybrid aspen plasmid lib...    46   0.002

>gb|CX654585.1|CX654585 PO02016G03 Poplar SC cDNA library Populus alba x Populus tremula
           var. glandulosa cDNA clone PO02016G03 5', mRNA sequence
          Length = 476

 Score = 56.0 bits (28), Expect = 2e-006
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 26  gctcaaagagcaagggatttccatgttggttggttt 61
           |||||||||||||| |||||||||||||| ||||||
Sbjct: 398 gctcaaagagcaagagatttccatgttggatggttt 433



>gb|CX174034.1|CX174034 A08_69-64_02.ab1 leaf inoculated with Marssonia pathogen of Populus
           deltoides Populus deltoides cDNA, mRNA sequence
          Length = 643

 Score = 48.1 bits (24), Expect = 6e-004
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 26  gctcaaagagcaagggatttccatgttggttggttt 61
           |||||||||||||| ||||| |||||||| ||||||
Sbjct: 98  gctcaaagagcaagagattttcatgttggatggttt 133



>gb|CK097994.1|CK097994 A001P37.5pR Hybrid aspen plasmid library Populus tremula x Populus
           tremuloides cDNA clone A001P37 5', mRNA sequence
          Length = 528

 Score = 46.1 bits (23), Expect = 0.002
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 26  gctcaaagagcaagggatttccatgttggttggtt 60
           |||||||||||||| ||||| |||||||| |||||
Sbjct: 106 gctcaaagagcaagagattttcatgttggatggtt 140



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 78,300
Number of Sequences: 369679
Number of extensions: 78300
Number of successful extensions: 20255
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20252
Number of HSP's gapped (non-prelim): 3
length of query: 851
length of database: 203,408,664
effective HSP length: 19
effective length of query: 832
effective length of database: 196,384,763
effective search space: 163392122816
effective search space used: 163392122816
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)