BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3042568.2.1
(1174 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI164628.1|AI164628 A066P21U Hybrid aspen plasmid librar... 121 6e-026
gb|CK099401.1|CK099401 A066P21.5pR Hybrid aspen plasmid lib... 88 9e-016
gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, compl... 82 6e-014
gb|CF232861.1|CF232861 PtaJXO0016F7F0711 Poplar cDNA librar... 52 5e-005
gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and... 50 2e-004
gb|CF936648.1|CF936648 PO3008E09 Populus tomentiglandulosa ... 48 8e-004
gb|AF139835.1|AF139835 Populus tremula x Populus tremuloide... 46 0.003
gb|AI166267.1|AI166267 xylem.est.116 Poplar xylem Lambda ZA... 44 0.012
gb|AF133675.1|AF133675 Populus tremula x Populus tremuloide... 44 0.012
gb|BU896476.1|BU896476 X041D11 Populus wood cDNA library Po... 42 0.047
gb|CK116341.1|CK116341 B010P30 Hybrid aspen plasmid library... 42 0.047
gb|AJ772088.1|AJ772088 AJ772088 Populus euphratica shoot in... 42 0.047
gb|AJ776567.1|AJ776567 AJ776567 Populus euphratica root 3-6... 42 0.047
gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Librar... 40 0.19
gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Libr... 40 0.19
gb|CN517884.1|CN517884 GQ0094.B3_N10 GQ009 Populus trichoca... 40 0.19
>gb|AI164628.1|AI164628 A066P21U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 268
Score = 121 bits (61), Expect = 6e-026
Identities = 127/149 (85%)
Strand = Plus / Minus
Query: 858 ctttcttctcctttaacaccaataccacctcgataaaacagccaatttgtccagtctctg 917
||||||| ||| ||||| ||||| ||||||| ||||| |||||||||||||| || |||
Sbjct: 264 ctttcttgtcccttaaccccaattccacctctgtaaaaaagccaatttgtccaatcactg 205
Query: 918 aaatcctcaacaatcttctgccattcaaatccagatgggttaaataaatagggagcaaaa 977
|| ||||| || |||| ||||| |||||||||||||| || || |||||||||||||||
Sbjct: 204 aagtcctccactgtcttttgccactcaaatccagatggattgaacaaatagggagcaaaa 145
Query: 978 agccaagacaatgccataatccaactgct 1006
|||||||| | ||||||| |||||||||
Sbjct: 144 agccaagatagagccataaaccaactgct 116
>gb|CK099401.1|CK099401 A066P21.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A066P21 5', mRNA sequence
Length = 323
Score = 87.7 bits (44), Expect = 9e-016
Identities = 99/116 (85%), Gaps = 1/116 (0%)
Strand = Plus / Minus
Query: 892 aaaacagccaatttgtccagtctctgaaatcctcaacaatct-tctgccattcaaatcca 950
|||| |||||||||||||| || ||||| ||||| || ||| | ||||| |||||||||
Sbjct: 323 aaaaaagccaatttgtccaatcactgaagtcctccactgtctgtttgccactcaaatcca 264
Query: 951 gatgggttaaataaatagggagcaaaaagccaagacaatgccataatccaactgct 1006
||||| || || ||||||||||||||||||||||| | ||||||| |||||||||
Sbjct: 263 gatggattgaacaaatagggagcaaaaagccaagatagagccataaaccaactgct 208
>gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, complete sequence
Length = 96953
Score = 81.8 bits (41), Expect = 6e-014
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 833 ttcttcttcccaccaagcttcccagctttcttctcctttaacaccaataccacctcgata 892
|||||| ||||||||||| ||||| ||||||| ||| ||||| ||||| ||||||| ||
Sbjct: 28615 ttcttcatcccaccaagcctcccaactttcttgtcccttaaccccaattccacctctgta 28556
Query: 893 aaacagccaatttgtccagtctctgaaatcctc 925
||| |||||||||||||| || ||||| |||||
Sbjct: 28555 aaaaagccaatttgtccaatcactgaagtcctc 28523
Score = 77.8 bits (39), Expect = 9e-013
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 936 tgccattcaaatccagatgggttaaataaatagggagcaaaaagccaagacaatgccata 995
||||| |||||||||||||| || || ||||||||||||||||||||||| | ||||||
Sbjct: 28434 tgccactcaaatccagatggattgaacaaatagggagcaaaaagccaagatagagccata 28375
Query: 996 atccaactgct 1006
| |||||||||
Sbjct: 28374 aaccaactgct 28364
Score = 42.1 bits (21), Expect = 0.047
Identities = 135/173 (78%)
Strand = Plus / Minus
Query: 237 catcagatcccagcatttggattgttgccagcaaggatcagagatatctccaaacctctg 296
||||| |||||| ||| || ||||| |||||||| || ||||| || |||| |||| |
Sbjct: 31132 catcatatcccaatattggggttgttaccagcaagaatgagagaaatttccagtcctcgg 31073
Query: 297 ctgaacgcctggttgaacagaagtcgcgtctggaaagtggatatgaatggaaaccacgag 356
||||| || |||||||||| || || || ||||| || || | |||||||||||| ||
Sbjct: 31072 ctgaaggcttggttgaacatgagccgggtttggaaggttgaaacgaatggaaaccaagac 31013
Query: 357 caaatggctatgggtatgaaaatgaccatccccattccagcatcatagaggcg 409
| | ||||| || ||||| || | ||||||||| |||||||| || |||||
Sbjct: 31012 aagaatgctattgggatgaagatcagcatccccatcccagcatcgtataggcg 30960
>gb|CF232861.1|CF232861 PtaJXO0016F7F0711 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 737
Score = 52.0 bits (26), Expect = 5e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 919 aatcctcaacaatcttctgccattcaaatccaga 952
|||| ||||||||||||||||| |||||||||||
Sbjct: 266 aatcatcaacaatcttctgccactcaaatccaga 233
>gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and shoot Populus euphratica cDNA
clone 46, mRNA sequence
Length = 574
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||||
Sbjct: 479 gtacctgcccgggcggccgctcgaa 503
>gb|CF936648.1|CF936648 PO3008E09 Populus tomentiglandulosa T. Lee cDNA library Populus
tomentiglandulosa cDNA, mRNA sequence
Length = 425
Score = 48.1 bits (24), Expect = 8e-004
Identities = 93/116 (80%)
Strand = Plus / Minus
Query: 237 catcagatcccagcatttggattgttgccagcaaggatcagagatatctccaaacctctg 296
||||| ||||||| ||| || ||||| |||||||| || ||||| || |||| |||| |
Sbjct: 157 catcatatcccagtattggggttgttaccagcaagaatgagagaaatttccagtcctcgg 98
Query: 297 ctgaacgcctggttgaacagaagtcgcgtctggaaagtggatatgaatggaaacca 352
||||| || |||||||||| || || || ||||| || || | ||||||||||||
Sbjct: 97 ctgaaggcttggttgaacatgagccgggtttggaaggttgaaacgaatggaaacca 42
>gb|AF139835.1|AF139835 Populus tremula x Populus tremuloides F-box containing protein TIR1
(TIR1) mRNA, complete cds
Length = 2646
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1151 tacctgcccgggcggccgctcga 1173
|||||||||||||||||||||||
Sbjct: 65 tacctgcccgggcggccgctcga 43
>gb|AI166267.1|AI166267 xylem.est.116 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 645
Score = 44.1 bits (22), Expect = 0.012
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 919 aatcctcaacaatcttctgccattcaaatccaga 952
|||| ||||||||||||||||| ||||| |||||
Sbjct: 538 aatcatcaacaatcttctgccactcaaaaccaga 505
>gb|AF133675.1|AF133675 Populus tremula x Populus tremuloides retinoblastoma-related protein
1 (RB1) mRNA, complete cds
Length = 3572
Score = 44.1 bits (22), Expect = 0.012
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1152 acctgcccgggcggccgctcga 1173
||||||||||||||||||||||
Sbjct: 38 acctgcccgggcggccgctcga 17
>gb|BU896476.1|BU896476 X041D11 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 467
Score = 42.1 bits (21), Expect = 0.047
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 1089 atccctttcacaaaatggcttcgagaataaatacggtagttctcagcaaactt 1141
|||||||| || |||||||| |||||||| | | |||||| |||||||||||
Sbjct: 315 atccctttgacgaaatggctgcgagaatacaacctgtagttatcagcaaactt 263
>gb|CK116341.1|CK116341 B010P30 Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B010P30 5', mRNA sequence
Length = 297
Score = 42.1 bits (21), Expect = 0.047
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 1089 atccctttcacaaaatggcttcgagaataaatacggtagttctcagcaaactt 1141
|||||||| || |||||||| |||||||| | | |||||| |||||||||||
Sbjct: 98 atccctttgacgaaatggctgcgagaatacaacctgtagttatcagcaaactt 46
>gb|AJ772088.1|AJ772088 AJ772088 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700001C10F1, mRNA sequence
Length = 341
Score = 42.1 bits (21), Expect = 0.047
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 1089 atccctttcacaaaatggcttcgagaataaatacggtagttctcagcaaactt 1141
|||||||| || |||||||| |||||||| | | |||||| |||||||||||
Sbjct: 129 atccctttgacgaaatggctgcgagaatacaacctgtagttatcagcaaactt 181
>gb|AJ776567.1|AJ776567 AJ776567 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400015B12F1, mRNA sequence
Length = 468
Score = 42.1 bits (21), Expect = 0.047
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 1089 atccctttcacaaaatggcttcgagaataaatacggtagttctcagcaaactt 1141
|||||||| || |||||||| |||||||| | | |||||| |||||||||||
Sbjct: 466 atccctttgacgaaatggctgcgagaatacaacctgtagttatcagcaaactt 414
>gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 606
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1150 gtacctgcccgggcggccgc 1169
||||||||||||||||||||
Sbjct: 289 gtacctgcccgggcggccgc 270
>gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 786
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1150 gtacctgcccgggcggccgc 1169
||||||||||||||||||||
Sbjct: 656 gtacctgcccgggcggccgc 637
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgc 1169
||||||||||||||||||||
Sbjct: 625 gtacctgcccgggcggccgc 644
>gb|CN517884.1|CN517884 GQ0094.B3_N10 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0094_N10 5', mRNA sequence
Length = 457
Score = 40.1 bits (20), Expect = 0.19
Identities = 92/116 (79%)
Strand = Plus / Plus
Query: 237 catcagatcccagcatttggattgttgccagcaaggatcagagatatctccaaacctctg 296
||||| |||||| ||| || ||||| |||||||| || ||||| || |||| |||| |
Sbjct: 292 catcatatcccaatattggggttgttaccagcaagaatgagagaaatttccagtcctcgg 351
Query: 297 ctgaacgcctggttgaacagaagtcgcgtctggaaagtggatatgaatggaaacca 352
||||| || |||||||||| || || || ||||| || || | ||||||||||||
Sbjct: 352 ctgaaggcttggttgaacatgagccgggtttggaaggttgaaacgaatggaaacca 407
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 156,376
Number of Sequences: 369679
Number of extensions: 156376
Number of successful extensions: 42228
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42168
Number of HSP's gapped (non-prelim): 59
length of query: 1174
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1155
effective length of database: 196,384,763
effective search space: 226824401265
effective search space used: 226824401265
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)