BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3042304.2.1
(805 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU825809.1|BU825809 UK113TD01 Populus apical shoot cDNA ... 145 3e-033
gb|CA928550.1|CA928550 MTU6TR.P4.A02 Aspen root cDNA Librar... 145 3e-033
gb|CV237262.1|CV237262 WS01227.B21.1_C10 PT-GT-FL-A-3 Popul... 145 3e-033
gb|CV242276.1|CV242276 WS02514.B21.1_J24 PT-MB-N-A-15 Popul... 145 3e-033
gb|DT489199.1|DT489199 WS02538.B21_J01 PT-MB-N-A-15 Populus... 145 3e-033
gb|DT494608.1|DT494608 WS01118.BR.1_O19 PT-P-FL-A-2 Populus... 143 1e-032
gb|BI137576.1|BI137576 F088P66Y Populus flower cDNA library... 141 5e-032
gb|DT476310.1|DT476310 WS01229.B21_B21 PT-GT-FL-A-3 Populus... 141 5e-032
gb|DT487290.1|DT487290 WS02533.B21_E19 PT-MB-N-A-15 Populus... 141 5e-032
gb|CN550551.1|CN550551 GQ0242.B3_J13 GQ024 Populus trichoca... 139 2e-031
gb|CV247264.1|CV247264 WS01117.B21_J07 PT-P-FL-A-2 Populus ... 137 7e-031
gb|CV233669.1|CV233669 WS01211.B21_O21 PT-GT-FL-A-3 Populus... 135 3e-030
gb|BI137782.1|BI137782 F093P42Y Populus flower cDNA library... 133 1e-029
gb|DT519855.1|DT519855 WS02443.B21_N22 PTxD-ICC-N-A-14 Popu... 133 1e-029
gb|CV247664.1|CV247664 WS01118.B21_O19 PT-P-FL-A-2 Populus ... 127 7e-028
gb|CA928802.1|CA928802 MTU6TR.P7.A07 Aspen root cDNA Librar... 121 4e-026
gb|BI130649.1|BI130649 G108P73Y Populus cambium cDNA librar... 117 7e-025
gb|CK098211.1|CK098211 A007P62.5pR Hybrid aspen plasmid lib... 117 7e-025
gb|DT523430.1|DT523430 WS02039.B21_K21 PTxN-IB-N-A-11 Popul... 117 7e-025
gb|BI129436.1|BI129436 G090P66Y Populus cambium cDNA librar... 109 2e-022
gb|CX653431.1|CX653431 PO02001G11 Poplar SC cDNA library Po... 109 2e-022
gb|BI130663.1|BI130663 G108P95Y Populus cambium cDNA librar... 103 1e-020
gb|BI119774.1|BI119774 F005P05Y Populus flower cDNA library... 101 4e-020
gb|CV236293.1|CV236293 WS01223.B21_J13 PT-GT-FL-A-3 Populus... 101 4e-020
gb|BU884377.1|BU884377 R009G11 Populus root cDNA library Po... 98 6e-019
gb|CN522526.1|CN522526 GQ0121.B3_F24 GQ012 Populus trichoca... 98 6e-019
gb|DN493626.1|DN493626 G073P36.5pR Populus tension wood cDN... 98 6e-019
gb|CK091807.1|CK091807 F127P19.3pR Populus flower cDNA libr... 94 1e-017
gb|DT499631.1|DT499631 WS0118.BR_N17 PT-P-FL-A-2 Populus tr... 94 1e-017
gb|CV234257.1|CV234257 WS01214.B21_D24 PT-GT-FL-A-3 Populus... 90 2e-016
gb|CV246813.1|CV246813 WS01116.B21_A16 PT-P-FL-A-2 Populus ... 84 9e-015
gb|BU834862.1|BU834862 T066F04 Populus apical shoot cDNA li... 82 4e-014
gb|CF235228.1|CF235228 PtaJXT0020C7C0705 Poplar cDNA librar... 82 4e-014
gb|AI161839.1|AI161839 A007P62U Hybrid aspen plasmid librar... 66 2e-009
gb|BI135440.1|BI135440 F051P45Y Populus flower cDNA library... 64 9e-009
gb|BI129897.1|BI129897 G097P09Y Populus cambium cDNA librar... 62 3e-008
gb|CK088221.1|CK088221 A044P24.3pR Hybrid aspen plasmid lib... 58 5e-007
gb|CA925513.1|CA925513 MTU7TL.P2.D03 Aspen leaf cDNA Librar... 50 1e-004
gb|CF232400.1|CF232400 PtaJXO0010A5H0816 Poplar cDNA librar... 48 5e-004
gb|CV230060.1|CV230060 WS01915.B21_E22 PT-DX-N-A-10 Populus... 48 5e-004
gb|CV241062.1|CV241062 WS02511.B21_B22 PT-MB-N-A-15 Populus... 48 5e-004
gb|DT469792.1|DT469792 WS01918.C21_O11 PT-DX-N-A-10 Populus... 48 5e-004
gb|CV251224.1|CV251224 WS0116.B21_E05 PT-P-FL-A-2 Populus t... 46 0.002
gb|DT492733.1|DT492733 WS02552.C21_C13 PT-MB-N-A-15 Populus... 46 0.002
gb|DN484314.1|DN484314 G116P87.3pR Populus tension wood cDN... 44 0.008
gb|CF229028.1|CF229028 PtaXM0020C6C0606 Poplar cDNA library... 40 0.13
>gb|BU825809.1|BU825809 UK113TD01 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 552
Score = 145 bits (73), Expect = 3e-033
Identities = 210/257 (81%)
Strand = Plus / Plus
Query: 63 ttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgtt 122
||||| || ||||| ||||| |||||||| || |||||||||||||| ||| | | |||
Sbjct: 267 ttcaatacttatggacctcgaatgtgcatagatgatggccgtgttgttagtaattttgtt 326
Query: 123 gctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagt 182
||||||||||| | ||| ||||| |||| |||||||||||||| || || || ||||||
Sbjct: 327 gctcaggcactaaggaaggagcctatgactgtttatggtgatgggaaacagacaaggagt 386
Query: 183 ttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgta 242
|| |||| |||||||||| |||| |||||||||||| || |||||||| || ||||||
Sbjct: 387 tttcaatttgtttctgatttggttgagggtctgatgcgccttatggaaggagaacatgta 446
Query: 243 ggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtc 302
|| || || || || || || || || || ||||||||||| |||||||| || || |||
Sbjct: 447 gggcctttcaatcttggaaatccaggtgaattcaccatgctcgagcttgctaaggtggtc 506
Query: 303 caggacaccatcgaccc 319
||||| ||||| |||||
Sbjct: 507 caggaaaccattgaccc 523
>gb|CA928550.1|CA928550 MTU6TR.P4.A02 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 599
Score = 145 bits (73), Expect = 3e-033
Identities = 210/257 (81%)
Strand = Plus / Plus
Query: 63 ttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgtt 122
||||| || ||||| ||||| |||||||| || |||||||||||||| ||| | | |||
Sbjct: 169 ttcaatacttatggacctcgaatgtgcatagatgatggccgtgttgttagtaattttgtt 228
Query: 123 gctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagt 182
||||||||||| | ||| ||||| |||| |||||||||||||| || || || ||||||
Sbjct: 229 gctcaggcactaaggaaggagcctatgactgtttatggtgatgggaaacagacaaggagt 288
Query: 183 ttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgta 242
|| |||| || ||||||| |||| |||||||||||| || |||||||| || ||||||
Sbjct: 289 tttcaatttggttctgatttggttgagggtctgatgcgtcttatggaaggagaacatgta 348
Query: 243 ggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtc 302
||||| || || || || || || || || ||||||||||| |||||||| || || |||
Sbjct: 349 ggacctttcaatcttggaaatccaggtgaattcaccatgctcgagcttgctaaggtggtc 408
Query: 303 caggacaccatcgaccc 319
||||| ||||| |||||
Sbjct: 409 caggaaaccattgaccc 425
>gb|CV237262.1|CV237262 WS01227.B21.1_C10 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01227_C10 3', mRNA sequence
Length = 895
Score = 145 bits (73), Expect = 3e-033
Identities = 210/257 (81%)
Strand = Plus / Minus
Query: 63 ttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgtt 122
||||| || ||||| ||||| |||||||| || |||||||||||||| ||| | | |||
Sbjct: 724 ttcaatacttatggacctcgaatgtgcatagatgatggccgtgttgttagtaattttgtt 665
Query: 123 gctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagt 182
||||||||||| | ||| ||||| |||| |||||||||||||| || || || ||||||
Sbjct: 664 gctcaggcactaaggaaggagcctatgactgtttatggtgatgggaaacagacaaggagt 605
Query: 183 ttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgta 242
|| |||| |||||||||| |||| |||||||||||| || |||||||| || ||||||
Sbjct: 604 tttcaatttgtttctgatttggttgagggtctgatgcgccttatggaaggagaacatgta 545
Query: 243 ggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtc 302
|| || || || || || || || || || ||||||||||| ||||||||| | || |||
Sbjct: 544 gggcctttcaatcttggaaatccgggtgaattcaccatgctcgagcttgcccaggtggtc 485
Query: 303 caggacaccatcgaccc 319
||||| ||||| |||||
Sbjct: 484 caggaaaccattgaccc 468
>gb|CV242276.1|CV242276 WS02514.B21.1_J24 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02514_J24 3', mRNA sequence
Length = 856
Score = 145 bits (73), Expect = 3e-033
Identities = 210/257 (81%)
Strand = Plus / Minus
Query: 63 ttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgtt 122
||||| || ||||| ||||| |||||||| || |||||||||||||| ||| | | |||
Sbjct: 831 ttcaatacttatggacctcgaatgtgcatagatgatggccgtgttgttagtaattttgtt 772
Query: 123 gctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagt 182
||||||||||| | ||| ||||| |||| |||||||||||||| || || || ||||||
Sbjct: 771 gctcaggcactaaggaaggagcctatgactgtttatggtgatgggaaacagacaaggagt 712
Query: 183 ttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgta 242
|| |||| |||||||||| |||| |||||||||||| || |||||||| || ||||||
Sbjct: 711 tttcaatttgtttctgatttggttgagggtctgatgcgccttatggaaggagaacatgta 652
Query: 243 ggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtc 302
|| || || || || || || || || || ||||||||||| ||||||||| | || |||
Sbjct: 651 gggcctttcaatcttggaaatccgggtgaattcaccatgctcgagcttgcccaggtggtc 592
Query: 303 caggacaccatcgaccc 319
||||| ||||| |||||
Sbjct: 591 caggaaaccattgaccc 575
>gb|DT489199.1|DT489199 WS02538.B21_J01 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02538_J01 3', mRNA sequence
Length = 875
Score = 145 bits (73), Expect = 3e-033
Identities = 210/257 (81%)
Strand = Plus / Minus
Query: 63 ttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgtt 122
||||| || ||||| ||||| |||||||| || |||||||||||||| ||| | | |||
Sbjct: 726 ttcaatacttatggacctcgaatgtgcatagatgatggccgtgttgttagtaattttgtt 667
Query: 123 gctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagt 182
||||||||||| | ||| ||||| |||| |||||||||||||| || || || ||||||
Sbjct: 666 gctcaggcactaaggaaggagcctatgactgtttatggtgatgggaaacagacaaggagt 607
Query: 183 ttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgta 242
|| |||| |||||||||| |||| |||||||||||| || |||||||| || ||||||
Sbjct: 606 tttcaatttgtttctgatttggttgagggtctgatgcgccttatggaaggagaacatgta 547
Query: 243 ggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtc 302
|| || || || || || || || || || ||||||||||| ||||||||| | || |||
Sbjct: 546 gggcctttcaatcttggaaatccgggtgaattcaccatgctcgagcttgcccaggtggtc 487
Query: 303 caggacaccatcgaccc 319
||||| ||||| |||||
Sbjct: 486 caggaaaccattgaccc 470
>gb|DT494608.1|DT494608 WS01118.BR.1_O19 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01118_O19 5', mRNA sequence
Length = 723
Score = 143 bits (72), Expect = 1e-032
Identities = 203/248 (81%)
Strand = Plus / Plus
Query: 72 tatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcaggca 131
||||| ||||| |||||||| || |||||||||||||| ||| | | ||||||||||||
Sbjct: 8 tatggacctcgaatgtgcatagatgatggccgtgttgttagtaattttgttgctcaggca 67
Query: 132 ctgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaatat 191
|| | ||| ||||| |||| |||||||||||||| || || || |||||||| |||| |
Sbjct: 68 ctaaggaaggagcctatgactgtttatggtgatgggaaacagacaaggagttttcaattt 127
Query: 192 gtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccattt 251
||||||||| |||| |||||||||||| || |||||||| || |||||||| || ||
Sbjct: 128 gtttctgatttggttgagggtctgatgcgccttatggaaggagaacatgtagggcctttc 187
Query: 252 aacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtccaggacacc 311
|| || || || || || || ||||||||||| ||||||||| | || |||||||| |||
Sbjct: 188 aatcttggaaatccgggtgaattcaccatgctcgagcttgcccaggtggtccaggaaacc 247
Query: 312 atcgaccc 319
|| |||||
Sbjct: 248 attgaccc 255
>gb|BI137576.1|BI137576 F088P66Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 469
Score = 141 bits (71), Expect = 5e-032
Identities = 226/279 (81%)
Strand = Plus / Plus
Query: 60 atcttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantc 119
|||||||| || ||||| || || ||||||||||| |||||||||||||| ||| | |
Sbjct: 52 atcttcaatacttatggaccccggatgtgcattgatgatggccgtgttgttagtaatttt 111
Query: 120 gttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccagg 179
|||||||||||||||| ||| || || |||| |||||||||||||| || || || |||
Sbjct: 112 gttgctcaggcactgaggaaggaacctatgactgtttatggtgatgggaaacagactagg 171
Query: 180 agtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcat 239
||||| |||| |||||||||| |||| ||||| |||||| || |||||||| || |||
Sbjct: 172 agttttcaatttgtttctgatttggttgagggcctgatgcgccttatggaaggagaacat 231
Query: 240 gtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangtt 299
||||| || || || || || || || || || ||||||||||| |||||||| | ||
Sbjct: 232 gtagggcctttcaatcttgggaatccgggtgaattcaccatgcttgagcttgctcaggtg 291
Query: 300 gtccaggacaccatcgaccccaacgcacggatcgagttc 338
|||||||| |||||||| || || ||| |||| ||||||
Sbjct: 292 gtccaggaaaccatcgatccaaatgcaaggatagagttc 330
>gb|DT476310.1|DT476310 WS01229.B21_B21 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_B21 3', mRNA sequence
Length = 922
Score = 141 bits (71), Expect = 5e-032
Identities = 226/279 (81%)
Strand = Plus / Minus
Query: 60 atcttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantc 119
|||||||| || ||||| || || ||||||||||| |||||||||||||| ||| | |
Sbjct: 724 atcttcaatacttatggaccccggatgtgcattgatgatggccgtgttgttagtaatttt 665
Query: 120 gttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccagg 179
|||||||||||||||| ||| || || |||| |||||||||||||| || || || |||
Sbjct: 664 gttgctcaggcactgaggaaggaacctatgactgtttatggtgatgggaaacagactagg 605
Query: 180 agtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcat 239
||||| |||| |||||||||| |||| ||||| |||||| || |||||||| || |||
Sbjct: 604 agttttcaatttgtttctgatttggttgagggcctgatgcgccttatggaaggagaacat 545
Query: 240 gtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangtt 299
||||| || || || || || || || || || ||||||||||| |||||||| | ||
Sbjct: 544 gtagggcctttcaatcttgggaatccgggtgaattcaccatgcttgagcttgctcaggtg 485
Query: 300 gtccaggacaccatcgaccccaacgcacggatcgagttc 338
|||||||| |||||||| || || ||| |||| ||||||
Sbjct: 484 gtccaggaaaccatcgatccaaatgcaaggatagagttc 446
>gb|DT487290.1|DT487290 WS02533.B21_E19 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02533_E19 3', mRNA sequence
Length = 912
Score = 141 bits (71), Expect = 5e-032
Identities = 226/279 (81%)
Strand = Plus / Minus
Query: 60 atcttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantc 119
|||||||| || ||||| || || ||||||||||| |||||||||||||| ||| | |
Sbjct: 740 atcttcaatacttatggaccccggatgtgcattgatgatggccgtgttgttagtaatttt 681
Query: 120 gttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccagg 179
|||||||||||||||| ||| || || |||| |||||||||||||| || || || |||
Sbjct: 680 gttgctcaggcactgaggaaggaacctatgactgtttatggtgatgggaaacagactagg 621
Query: 180 agtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcat 239
||||| |||| |||||||||| |||| ||||| |||||| || |||||||| || |||
Sbjct: 620 agttttcaatttgtttctgatttggttgagggcctgatgcgccttatggaaggagaacat 561
Query: 240 gtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangtt 299
||||| || || || || || || || || || ||||||||||| |||||||| | ||
Sbjct: 560 gtagggcctttcaatcttgggaatccgggtgaattcaccatgcttgagcttgctcaggtg 501
Query: 300 gtccaggacaccatcgaccccaacgcacggatcgagttc 338
|||||||| |||||||| || || ||| |||| ||||||
Sbjct: 500 gtccaggaaaccatcgatccaaatgcaaggatagagttc 462
>gb|CN550551.1|CN550551 GQ0242.B3_J13 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0242_J13 5', mRNA sequence
Length = 709
Score = 139 bits (70), Expect = 2e-031
Identities = 198/242 (81%)
Strand = Plus / Plus
Query: 78 cctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcaggcactgang 137
||||| |||||||| || |||||||||||||| ||| | | |||||||||||||| | |
Sbjct: 219 cctcgaatgtgcatagatgatggccgtgttgttagtaattttgttgctcaggcactaagg 278
Query: 138 aangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaatatgtttct 197
|| ||||| |||| |||||||||||||| || || || |||||||| |||| |||||||
Sbjct: 279 aaggagcctatgactgtttatggtgatgggaaacagacaaggagttttcaatttgtttct 338
Query: 198 gatctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccatttaacctg 257
||| |||| |||||||||||| || |||||||| || |||||||| || || || ||
Sbjct: 339 gatttggttgagggtctgatgcgtcttatggaaggagaacatgtagggcctttcaatctt 398
Query: 258 ggcaaccccggcgagttcaccatgctggagcttgccaangttgtccaggacaccatcgac 317
|| || || || || ||||||||||| ||||||||| | || |||||||| ||||| |||
Sbjct: 399 ggaaatccgggtgaattcaccatgctcgagcttgcccaggtggtccaggaaaccatagac 458
Query: 318 cc 319
||
Sbjct: 459 cc 460
>gb|CV247264.1|CV247264 WS01117.B21_J07 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01117_J07 3', mRNA sequence
Length = 902
Score = 137 bits (69), Expect = 7e-031
Identities = 209/257 (81%)
Strand = Plus / Minus
Query: 63 ttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgtt 122
||||| || ||||| ||||| |||||||| || |||||||||||||| ||| | | |||
Sbjct: 787 ttcaatacttatggacctcgaatgtgcatagatgatggccgtgttgttagtaattttgtt 728
Query: 123 gctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagt 182
||||||||||| | ||| ||||| |||| |||||||||||||| || || || ||||||
Sbjct: 727 gctcaggcactaaggaaggagcctatgactgtttatggtgatgggaaacagacaaggagt 668
Query: 183 ttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgta 242
|| |||| |||||||||| |||| |||||||||||| || |||||||| || | ||||
Sbjct: 667 tttcaatttgtttctgatttggttgagggtctgatgcgccttatggaaggagaacgtgta 608
Query: 243 ggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtc 302
|| || || || || || || || || || ||||||||||| ||||||||| | || |||
Sbjct: 607 gggcctttcaatcttggaaatccgggtgaattcaccatgctcgagcttgcccaggtggtc 548
Query: 303 caggacaccatcgaccc 319
||||| ||||| |||||
Sbjct: 547 caggaaaccattgaccc 531
>gb|CV233669.1|CV233669 WS01211.B21_O21 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01211_O21 3', mRNA sequence
Length = 704
Score = 135 bits (68), Expect = 3e-030
Identities = 193/236 (81%)
Strand = Plus / Minus
Query: 84 atgtgcattgacgatggccgtgttgtcagttaantcgttgctcaggcactgangaangag 143
|||||||| || |||||||||||||| ||| | | |||||||||||||| | ||| |||
Sbjct: 703 atgtgcatagatgatggccgtgttgttagtaattttgttgctcaggcactaaggaaggag 644
Query: 144 ccattgacggtttatggtgatggaaagcaaaccaggagtttccaatatgtttctgatctg 203
|| |||| |||||||||||||| || || || |||||||| |||| |||||||||| ||
Sbjct: 643 cctatgactgtttatggtgatgggaaacagacaaggagttttcaatttgtttctgatttg 584
Query: 204 gtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggcaac 263
|| |||||||||||| || |||||||| || |||||||| || || || || || ||
Sbjct: 583 gttgagggtctgatgcgccttatggaaggagaacatgtagggcctttcaatcttggaaat 524
Query: 264 cccggcgagttcaccatgctggagcttgccaangttgtccaggacaccatcgaccc 319
|| || || ||||||||||| ||||||||| | || |||||||| ||||| |||||
Sbjct: 523 ccgggtgaattcaccatgctcgagcttgcccaggtggtccaggaaaccattgaccc 468
>gb|BI137782.1|BI137782 F093P42Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 432
Score = 133 bits (67), Expect = 1e-029
Identities = 225/279 (80%)
Strand = Plus / Plus
Query: 60 atcttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantc 119
|||||||| || ||||| || || ||||||||||| |||||||||||||| ||| | |
Sbjct: 26 atcttcaatacttatggaccccggatgtgcattgatgatggccgtgttgttagtaatttt 85
Query: 120 gttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccagg 179
|||||||||||||||| ||| || || |||| |||||||||||||| || || || |||
Sbjct: 86 gttgctcaggcactgaggaaggaacctatgactgtttatggtgatgggaaacagactagg 145
Query: 180 agtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcat 239
||| | |||| |||||||||| |||| ||||| |||||| || |||||||| || |||
Sbjct: 146 agtgttcaatttgtttctgatttggttgagggcctgatgcgccttatggaaggagaacat 205
Query: 240 gtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangtt 299
||||| || || || || || || || || || ||||||||||| |||||||| | ||
Sbjct: 206 gtagggcctttcaatcttgggaatccgggtgaattcaccatgcttgagcttgctcaggtg 265
Query: 300 gtccaggacaccatcgaccccaacgcacggatcgagttc 338
|||||||| |||||||| || || ||| |||| ||||||
Sbjct: 266 gtccaggaaaccatcgatccaaatgcaaggatagagttc 304
>gb|DT519855.1|DT519855 WS02443.B21_N22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02443_N22 3', mRNA sequence
Length = 905
Score = 133 bits (67), Expect = 1e-029
Identities = 207/255 (81%)
Strand = Plus / Minus
Query: 84 atgtgcattgacgatggccgtgttgtcagttaantcgttgctcaggcactgangaangag 143
||||||||||| |||||||||||||| ||| | | |||||||||||||||| ||| ||
Sbjct: 904 atgtgcattgatgatggccgtgttgttagtaattttgttgctcaggcactgaggaaggaa 845
Query: 144 ccattgacggtttatggtgatggaaagcaaaccaggagtttccaatatgtttctgatctg 203
|| |||| |||||||||||||| || || || |||||||| |||| |||||||||| ||
Sbjct: 844 cctatgactgtttatggtgatgggaaacagactaggagttttcaatttgtttctgatttg 785
Query: 204 gtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggcaac 263
|| ||||| |||||| || |||||||| || |||||||| || || || || || ||
Sbjct: 784 gttgagggcctgatgcgccttatggaaggagaacatgtagggcctttcaatcttgggaat 725
Query: 264 cccggcgagttcaccatgctggagcttgccaangttgtccaggacaccatcgaccccaac 323
|| || || ||||||||||| |||||||| | || |||||||| |||||||| || ||
Sbjct: 724 ccgggtgaattcaccatgcttgagcttgctcaggtggtccaggaaaccatcgatccaaat 665
Query: 324 gcacggatcgagttc 338
||| |||| ||||||
Sbjct: 664 gcaaggatagagttc 650
>gb|CV247664.1|CV247664 WS01118.B21_O19 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01118_O19 3', mRNA sequence
Length = 700
Score = 127 bits (64), Expect = 7e-028
Identities = 183/224 (81%)
Strand = Plus / Minus
Query: 96 gatggccgtgttgtcagttaantcgttgctcaggcactgangaangagccattgacggtt 155
|||||||||||||| ||| | | |||||||||||||| | ||| ||||| |||| |||
Sbjct: 692 gatggccgtgttgttagtaattttgttgctcaggcactaaggaaggagcctatgactgtt 633
Query: 156 tatggtgatggaaagcaaaccaggagtttccaatatgtttctgatctggtcgagggtctg 215
||||||||||| || || || |||||||| |||| |||||||||| |||| |||||||||
Sbjct: 632 tatggtgatgggaaacagacaaggagttttcaatttgtttctgatttggttgagggtctg 573
Query: 216 atgaagctgatggaaggcgagcatgtaggaccatttaacctgggcaaccccggcgagttc 275
||| || |||||||| || |||||||| || || || || || || || || || |||
Sbjct: 572 atgcgccttatggaaggagaacatgtagggcctttcaatcttggaaatccgggtgaattc 513
Query: 276 accatgctggagcttgccaangttgtccaggacaccatcgaccc 319
|||||||| ||||||||| | || |||||||| ||||| |||||
Sbjct: 512 accatgctcgagcttgcccaggtggtccaggaaaccattgaccc 469
>gb|CA928802.1|CA928802 MTU6TR.P7.A07 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 599
Score = 121 bits (61), Expect = 4e-026
Identities = 207/257 (80%)
Strand = Plus / Plus
Query: 63 ttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgtt 122
||||| || ||||| ||||| |||||||| || |||||||||||||| ||| | | |||
Sbjct: 169 ttcaatacttatggacctcgaatgtgcatagatgatggccgtgttgttagtaattttgtt 228
Query: 123 gctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagt 182
|||| |||||| | ||| ||||| |||| |||||||||||||| || || || ||||||
Sbjct: 229 gctcgggcactaaggaaggagcctatgactgtttatggtgatgggaaacagacaaggagt 288
Query: 183 ttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgta 242
|| |||| |||||||||| |||| |||||||||||| || |||||| | || |||| |
Sbjct: 289 tttcaatttgtttctgatttggttgagggtctgatgcgtcttatggaatgagaacatgca 348
Query: 243 ggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtc 302
|| || || || || || || || || || ||||||||||| |||||||| || || |||
Sbjct: 349 gggcctttcaatcttggaaatccaggtgaattcaccatgctcgagcttgctaaggtggtc 408
Query: 303 caggacaccatcgaccc 319
||||| ||||| |||||
Sbjct: 409 caggaaaccattgaccc 425
>gb|BI130649.1|BI130649 G108P73Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 370
Score = 117 bits (59), Expect = 7e-025
Identities = 164/200 (82%)
Strand = Plus / Plus
Query: 120 gttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccagg 179
|||||||||||||| | ||| ||||| |||| |||||||||||||| || || || |||
Sbjct: 3 gttgctcaggcactaaggaaggagcctatgactgtttatggtgatgggaaacagacaagg 62
Query: 180 agtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcat 239
||||| |||| |||||||||| |||| |||||||||||| || |||||||| || |||
Sbjct: 63 agttttcaatttgtttctgatttggttgagggtctgatgcgccttatggaaggagaacat 122
Query: 240 gtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangtt 299
||||| || || || || || || || || || ||||||||||| |||||||| || ||
Sbjct: 123 gtagggcctttcaatcttggaaatccaggtgaattcaccatgctcgagcttgctaaggtg 182
Query: 300 gtccaggacaccatcgaccc 319
|||||||| ||||| |||||
Sbjct: 183 gtccaggaaaccattgaccc 202
>gb|CK098211.1|CK098211 A007P62.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A007P62 5', mRNA sequence
Length = 385
Score = 117 bits (59), Expect = 7e-025
Identities = 185/228 (81%)
Strand = Plus / Plus
Query: 63 ttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgtt 122
||||| || ||||| ||||| |||||||| || |||||||||||||| ||| | | |||
Sbjct: 158 ttcaatacttatggacctcgaatgtgcatagatgatggccgtgttgttagtaattttgtt 217
Query: 123 gctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagt 182
||||||||||| | ||| ||||| |||| |||||||||||||| || || || ||||||
Sbjct: 218 gctcaggcactaaggaaggagcctatgactgtttatggtgatgggaaacagacaaggagt 277
Query: 183 ttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgta 242
|| |||| |||||||||| |||| |||||||||||| || |||||||| || ||||||
Sbjct: 278 tttcaatttgtttctgatttggttgagggtctgatgcgccttatggaaggagaacatgta 337
Query: 243 ggaccatttaacctgggcaaccccggcgagttcaccatgctggagctt 290
| || || || || || || || || || ||||||||||| ||||||
Sbjct: 338 cggcctttcaatcttggaaatccaggtgaattcaccatgctcgagctt 385
>gb|DT523430.1|DT523430 WS02039.B21_K21 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02039_K21 3', mRNA sequence
Length = 890
Score = 117 bits (59), Expect = 7e-025
Identities = 182/224 (81%)
Strand = Plus / Minus
Query: 69 acatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcag 128
|||||||| ||||||||||| | || ||||| |||||||||||| | |||||||||||
Sbjct: 727 acatatgggcctcgcatgtgtttggatgatggacgtgttgtcagtaatttcgttgctcag 668
Query: 129 gcactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaa 188
| | || ||||| |||| |||||||| ||||| || ||||| ||||| ||||||
Sbjct: 667 gtcattcgcaaacagccaatgactgtttatggggatgggaaacaaactaggagcttccaa 608
Query: 189 tatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggacca 248
||||||||||| ||||| || || ||| || || ||||||||||||||||| |||||
Sbjct: 607 tatgtttctgacctggttgatgggctggtggctctaatggaaggcgagcatgtgggacct 548
Query: 249 tttaacctgggcaaccccggcgagttcaccatgctggagcttgc 292
|| ||||| |||||||| || |||||||| ||||| ||||||||
Sbjct: 547 ttcaaccttggcaacccaggagagttcactatgcttgagcttgc 504
>gb|BI129436.1|BI129436 G090P66Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 542
Score = 109 bits (55), Expect = 2e-022
Identities = 163/200 (81%)
Strand = Plus / Plus
Query: 120 gttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccagg 179
|||||||||||||| | ||| ||||| |||| |||||||||||||| || || || |||
Sbjct: 16 gttgctcaggcactaaggaaggagcctatgactgtttatggtgatgggaaacagacaagg 75
Query: 180 agtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcat 239
||||| |||| |||||||||| |||| |||||||||||| || |||||||| || |||
Sbjct: 76 agttttcaatttgtttctgatttggttgagggtctgatgcgccttatggaaggagaacat 135
Query: 240 gtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangtt 299
||||| || || || || || || || || || | ||||||||| |||||||| || ||
Sbjct: 136 gtagggcctttcaatcttggaaatccaggtgaatgcaccatgctcgagcttgctaaggtg 195
Query: 300 gtccaggacaccatcgaccc 319
|||||||| ||||| |||||
Sbjct: 196 gtccaggaaaccattgaccc 215
>gb|CX653431.1|CX653431 PO02001G11 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02001G11 5', mRNA sequence
Length = 454
Score = 109 bits (55), Expect = 2e-022
Identities = 175/216 (81%)
Strand = Plus / Plus
Query: 123 gctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagt 182
||||||||||||| ||| || || |||| |||||||||||||| || || || ||||||
Sbjct: 11 gctcaggcactgaggaaggaacccatgactgtttatggtgatgggaaacagactaggagt 70
Query: 183 ttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgta 242
|| |||| ||||||||||||||| ||||| |||||| || |||||||| || ||||||
Sbjct: 71 tttcaatttgtttctgatctggttgagggcctgatgcgccttatggaaggagaacatgta 130
Query: 243 ggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtc 302
|| || || || || || || || || || ||||||||||| |||||||| | || |||
Sbjct: 131 gggcctttcaatcttgggaatccaggtgaattcaccatgcttgagcttgctcaggtggtc 190
Query: 303 caggacaccatcgaccccaacgcacggatcgagttc 338
||||| |||||||| || || ||| |||| ||||||
Sbjct: 191 caggaaaccatcgatccaaatgcaaggatagagttc 226
>gb|BI130663.1|BI130663 G108P95Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 455
Score = 103 bits (52), Expect = 1e-020
Identities = 131/157 (83%), Gaps = 1/157 (0%)
Strand = Plus / Plus
Query: 63 ttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgtt 122
||||| || ||||| ||||| |||||||| || |||||||||||||| ||| | | |||
Sbjct: 285 ttcaatacttatggacctcgaatgtgcatagatgatggccgtgttgttagtaattttgtt 344
Query: 123 gctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccaggag- 181
||||||||||| | ||| ||||| |||| |||||||||||||| || || || |||||
Sbjct: 345 gctcaggcactaaggaaggagcctatgactgtttatggtgatgggaaacagacaaggagt 404
Query: 182 tttccaatatgtttctgatctggtcgagggtctgatg 218
|||| ||| |||||||||| |||| ||||||||||||
Sbjct: 405 tttcaaatttgtttctgatttggttgagggtctgatg 441
>gb|BI119774.1|BI119774 F005P05Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 302
Score = 101 bits (51), Expect = 4e-020
Identities = 123/148 (83%)
Strand = Plus / Plus
Query: 63 ttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgtt 122
||||| || ||||| ||||| |||||||| || |||||||||||||| ||| | | |||
Sbjct: 155 ttcaatacttatggacctcgaatgtgcatagatgatggccgtgttgttagtaattttgtt 214
Query: 123 gctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagt 182
||||||||||| | ||| ||||| |||| |||||||||||||| || || || ||||||
Sbjct: 215 gctcaggcactaaggaaggagcctatgactgtttatggtgatgggaaacagacaaggagt 274
Query: 183 ttccaatatgtttctgatctggtcgagg 210
|| |||| |||||||||| |||| ||||
Sbjct: 275 tttcaatttgtttctgatttggttgagg 302
>gb|CV236293.1|CV236293 WS01223.B21_J13 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01223_J13 3', mRNA sequence
Length = 867
Score = 101 bits (51), Expect = 4e-020
Identities = 180/224 (80%)
Strand = Plus / Minus
Query: 69 acatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcag 128
|||||||| ||||||||||| | || ||||| |||||||||||| | |||||||||||
Sbjct: 824 acatatgggcctcgcatgtgtttggatgatggacgtgttgtcagtaatttcgttgctcag 765
Query: 129 gcactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaa 188
| | || ||||| |||| || ||||| ||||| || ||||| ||||| ||||||
Sbjct: 764 gtcattcgcaaacagccaatgactgtatatggggatgggaaacaaactaggagcttccaa 705
Query: 189 tatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggacca 248
||||||||||| ||||| || || ||| || || |||||||||||||| || |||||
Sbjct: 704 tatgtttctgacctggttgatgggctggtggctctaatggaaggcgagcacgtgggacct 645
Query: 249 tttaacctgggcaaccccggcgagttcaccatgctggagcttgc 292
|| ||||| |||||||| || |||||||| ||||| ||||||||
Sbjct: 644 ttcaaccttggcaacccaggagagttcactatgctcgagcttgc 601
>gb|BU884377.1|BU884377 R009G11 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 614
Score = 97.6 bits (49), Expect = 6e-019
Identities = 141/172 (81%)
Strand = Plus / Plus
Query: 142 agccattgacggtttatggtgatggaaagcaaaccaggagtttccaatatgtttctgatc 201
||||| |||| || ||||| ||||| || ||||| ||||| ||||||||||||||||| |
Sbjct: 23 agccaatgactgtatatggggatgggaaacaaactaggagcttccaatatgtttctgacc 82
Query: 202 tggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggca 261
|||| || || ||| || || |||||||||||||| || ||||| || ||||| ||||
Sbjct: 83 tggttgatgggctggtggctctaatggaaggcgagcacgtgggacctttcaaccttggca 142
Query: 262 accccggcgagttcaccatgctggagcttgccaangttgtccaggacaccat 313
|||| || |||||||| ||||| |||||||| | |||||| |||| |||||
Sbjct: 143 acccaggagagttcactatgctcgagcttgcagaggttgtcaaggagaccat 194
>gb|CN522526.1|CN522526 GQ0121.B3_F24 GQ012 Populus trichocarpa x Populus deltoides cDNA
clone GQ0121_F24 5', mRNA sequence
Length = 467
Score = 97.6 bits (49), Expect = 6e-019
Identities = 141/172 (81%)
Strand = Plus / Plus
Query: 148 tgacggtttatggtgatggaaagcaaaccaggagtttccaatatgtttctgatctggtcg 207
|||| |||||||||||||| || || || |||||||| |||| |||||||||| |||| |
Sbjct: 15 tgactgtttatggtgatgggaaacagacaaggagttttcaatttgtttctgatttggttg 74
Query: 208 agggtctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggcaaccccg 267
||||||||||| || |||||||| || |||||||| || || || || || || || |
Sbjct: 75 agggtctgatgcgccttatggaaggagaacatgtagggcctttcaatcttggaaatccag 134
Query: 268 gcgagttcaccatgctggagcttgccaangttgtccaggacaccatcgaccc 319
| || ||||||||||| ||||||||| | || |||||||| ||||| |||||
Sbjct: 135 gtgaattcaccatgctcgagcttgcccaggtggtccaggaaaccattgaccc 186
>gb|DN493626.1|DN493626 G073P36.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G073P36 5', mRNA sequence
Length = 757
Score = 97.6 bits (49), Expect = 6e-019
Identities = 195/245 (79%)
Strand = Plus / Plus
Query: 69 acatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcag 128
|||||||| ||||||||||| | || ||||| |||||||||||| | |||||||||||
Sbjct: 105 acatatgggcctcgcatgtgtttggatgatggacgtgttgtcagtaatttcgttgctcag 164
Query: 129 gcactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaa 188
| | || ||||| |||| || ||||| ||||| || ||||| ||||| ||||||
Sbjct: 165 gtcattcgcaatcagccaatgactgtatatggggatgggaaacaaactaggagcttccaa 224
Query: 189 tatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggacca 248
||||||||||| ||||| || || ||| || || |||||||||||||| || |||||
Sbjct: 225 tatgtttctgacctggttgatgggctggtggctctaatggaaggcgagcacgtgggacct 284
Query: 249 tttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtccaggac 308
|| ||| | |||||||| || |||||||| ||||| |||||||| | |||||| ||||
Sbjct: 285 ttcaacgttggcaacccaggagagttcactatgctcgagcttgcagaggttgtcaaggag 344
Query: 309 accat 313
|||||
Sbjct: 345 accat 349
>gb|CK091807.1|CK091807 F127P19.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F127P19 3', mRNA sequence
Length = 844
Score = 93.7 bits (47), Expect = 1e-017
Identities = 125/151 (82%)
Strand = Plus / Minus
Query: 142 agccattgacggtttatggtgatggaaagcaaaccaggagtttccaatatgtttctgatc 201
||||| |||| || ||||| ||||| || ||||| ||||| ||||||||||||||||| |
Sbjct: 563 agccaatgactgtatatggggatgggaaacaaactaggagcttccaatatgtttctgacc 504
Query: 202 tggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggca 261
|||| || || ||| || || |||||||||||||| || ||||| || ||||| ||||
Sbjct: 503 tggttgatgggctggtggctctaatggaaggcgagcacgtgggacctttcaaccttggca 444
Query: 262 accccggcgagttcaccatgctggagcttgc 292
|||| || |||||||| ||||| ||||||||
Sbjct: 443 acccaggagagttcactatgctcgagcttgc 413
Score = 52.0 bits (26), Expect = 3e-005
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 69 acatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcag 128
|||||||| ||||||||||| | || ||||| |||||||||||| | |||||||||||
Sbjct: 756 acatatgggcctcgcatgtgtttggatgatggacgtgttgtcagtaatttcgttgctcag 697
Query: 129 g 129
|
Sbjct: 696 g 696
>gb|DT499631.1|DT499631 WS0118.BR_N17 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0118_N17
5', mRNA sequence
Length = 565
Score = 93.7 bits (47), Expect = 1e-017
Identities = 179/224 (79%)
Strand = Plus / Plus
Query: 69 acatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcag 128
|||||||| ||||||||||| | || ||||| |||||||||||| | |||||||||||
Sbjct: 28 acatatgggcctcgcatgtgtttggatgatggacgtgttgtcagtaatttcgttgctcag 87
Query: 129 gcactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaa 188
| | || ||||| |||| || ||||| ||||| || ||||| ||||| ||||||
Sbjct: 88 gtcattcgcaaacagccaatgactgtatatggggatgggaaacaaactaggagcttccaa 147
Query: 189 tatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggacca 248
||||||||||| ||||| || || ||| || || |||||||||||||| || |||||
Sbjct: 148 tatgtttctgacctggttgatgggctggtggctctaatggaaggcgagcacgtgggacct 207
Query: 249 tttaacctgggcaaccccggcgagttcaccatgctggagcttgc 292
|| ||||| |||||||| || |||||||| ||||| |||||||
Sbjct: 208 ttcaaccttggcaacccaggagagttcactatgctccagcttgc 251
>gb|CV234257.1|CV234257 WS01214.B21_D24 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01214_D24 3', mRNA sequence
Length = 737
Score = 89.7 bits (45), Expect = 2e-016
Identities = 114/137 (83%)
Strand = Plus / Minus
Query: 156 tatggtgatggaaagcaaaccaggagtttccaatatgtttctgatctggtcgagggtctg 215
||||| ||||| || ||||| ||||| ||||||||||||||||| ||||| || || |||
Sbjct: 737 tatggggatgggaaacaaactaggagcttccaatatgtttctgacctggttgatgggctg 678
Query: 216 atgaagctgatggaaggcgagcatgtaggaccatttaacctgggcaaccccggcgagttc 275
|| || |||||||||||||| || ||||| || ||||| |||||||| || ||||||
Sbjct: 677 gtggctctaatggaaggcgagcacgtgggacctttcaaccttggcaacccaggagagttc 618
Query: 276 accatgctggagcttgc 292
|| ||||| ||||||||
Sbjct: 617 actatgctcgagcttgc 601
>gb|CV246813.1|CV246813 WS01116.B21_A16 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01116_A16 3', mRNA sequence
Length = 706
Score = 83.8 bits (42), Expect = 9e-015
Identities = 141/173 (81%), Gaps = 1/173 (0%)
Strand = Plus / Minus
Query: 148 tgacggtttatggtgatggaaagcaaacca-ggagtttccaatatgtttctgatctggtc 206
|||| |||||||||||||| || || |||| ||||||| |||| |||||||||| ||||
Sbjct: 703 tgactgtttatggtgatgggaaacagaccaaggagttttcaatttgtttctgatttggtt 644
Query: 207 gagggtctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggcaacccc 266
|||||||||||| || |||||||| || | |||||| || || || || || || ||
Sbjct: 643 gagggtctgatgcgccttatggaaggagaacgtgtagggcctttcaatcttggaaatccg 584
Query: 267 ggcgagttcaccatgctggagcttgccaangttgtccaggacaccatcgaccc 319
|| || ||||||||||| ||||||||| | || |||||||| ||||| |||||
Sbjct: 583 ggtgaattcaccatgctcgagcttgcccaggtggtccaggaaaccattgaccc 531
>gb|BU834862.1|BU834862 T066F04 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 532
Score = 81.8 bits (41), Expect = 4e-014
Identities = 140/172 (81%), Gaps = 1/172 (0%)
Strand = Plus / Plus
Query: 148 tgacggtttatggtgatggaaagcaaaccaggagtttccaatatgtttctgatctggtcg 207
|||| |||||||||||||| || | | | |||||||| |||| |||||||||| |||| |
Sbjct: 13 tgactgtttatggtgatgggaaacga-caaggagttttcaatttgtttctgatttggttg 71
Query: 208 agggtctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggcaaccccg 267
||||||||||| || |||||||| || |||||||| || || || || || || || |
Sbjct: 72 agggtctgatgcgccttatggaaggagaacatgtagggcctttcaatcttggaaatccag 131
Query: 268 gcgagttcaccatgctggagcttgccaangttgtccaggacaccatcgaccc 319
| || ||||||||||| |||||||| || || |||||||| ||||| |||||
Sbjct: 132 gtgaattcaccatgctcgagcttgctaaggtggtccaggaaaccattgaccc 183
>gb|CF235228.1|CF235228 PtaJXT0020C7C0705 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 436
Score = 81.8 bits (41), Expect = 4e-014
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 177 aggagtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgag 236
||||| ||||||||||||||||||||||| || || ||| || || ||||||||||||
Sbjct: 7 aggagcttccaatatgtttctgatctggttgatgggctggtggcactaatggaaggcgag 66
Query: 237 catgtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagct 289
||||| ||||| || ||||| ||||| || || |||||||| ||||| |||||
Sbjct: 67 catgtgggacctttcaaccttggcaatccaggagagttcactatgctagagct 119
>gb|AI161839.1|AI161839 A007P62U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 531
Score = 65.9 bits (33), Expect = 2e-009
Identities = 102/122 (83%), Gaps = 3/122 (2%)
Strand = Plus / Plus
Query: 79 ctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcaggcactganga 138
|||| |||||||| || |||||||||||||| || ||| | |||||||||||||| | ||
Sbjct: 128 ctcgaatgtgcatagatgatggccgtgttgttag-taatttgttgctcaggcactaagga 186
Query: 139 angagccattgacggtttatggtgatggaaagcaaaccaggagtttccaatatgtttctg 198
| ||||| |||| | |||||||||||| || || || |||||||| |||| ||||||||
Sbjct: 187 aggagcctatgactg-ttatggtgatgggaaacagacaaggagttt-caatttgtttctg 244
Query: 199 at 200
||
Sbjct: 245 at 246
>gb|BI135440.1|BI135440 F051P45Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 257
Score = 63.9 bits (32), Expect = 9e-009
Identities = 87/105 (82%), Gaps = 1/105 (0%)
Strand = Plus / Plus
Query: 63 ttcaacacatatggccctcgcatgtgcattgacgatggcc-gtgttgtcagttaantcgt 121
||||| || ||||| ||||| |||||||| || ||||||| ||||||| ||| | | ||
Sbjct: 153 ttcaatacttatggacctcgaatgtgcatagatgatggcccgtgttgttagtaattttgt 212
Query: 122 tgctcaggcactgangaangagccattgacggtttatggtgatgg 166
|||||||||||| | ||| ||||| |||| ||||||||||||||
Sbjct: 213 tgctcaggcactaaggaaggagcctatgactgtttatggtgatgg 257
>gb|BI129897.1|BI129897 G097P09Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 363
Score = 61.9 bits (31), Expect = 3e-008
Identities = 108/134 (80%)
Strand = Plus / Plus
Query: 186 caatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtagga 245
|||| |||||||||| |||| |||||||||||| || |||||||| || ||||||||
Sbjct: 4 caatttgtttctgatttggttgagggtctgatgcgccttatggaaggagaacatgtaggg 63
Query: 246 ccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtccag 305
|| || || || || || || || || ||| ||||||| |||||||| || || ||||||
Sbjct: 64 cctttcaatcttggaaatccaggtgaattcgccatgctcgagcttgctaaggtggtccag 123
Query: 306 gacaccatcgaccc 319
|| ||||| |||||
Sbjct: 124 gaaaccattgaccc 137
>gb|CK088221.1|CK088221 A044P24.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A044P24 3', mRNA sequence
Length = 798
Score = 58.0 bits (29), Expect = 5e-007
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 225 atggaaggcgagcatgtaggaccatttaacctgggcaaccccggcgagttcaccatgctg 284
||||||||||||||||| ||||| || ||||| ||||| || || |||||||| |||||
Sbjct: 509 atggaaggcgagcatgtgggacctttcaaccttggcaatccaggagagttcactatgcta 450
Query: 285 gagct 289
|||||
Sbjct: 449 gagct 445
>gb|CA925513.1|CA925513 MTU7TL.P2.D03 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 595
Score = 50.1 bits (25), Expect = 1e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 225 atggaaggcgagcatgtaggaccatttaacctgggcaaccccggcgagttcaccatgctg 284
||||||||||||||||| ||||| || ||||| ||||| || || |||| ||| |||||
Sbjct: 303 atggaaggcgagcatgtgggacctttcaaccttggcaatccaggagagtacactatgcta 362
Query: 285 gagct 289
|||||
Sbjct: 363 gagct 367
>gb|CF232400.1|CF232400 PtaJXO0010A5H0816 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 665
Score = 48.1 bits (24), Expect = 5e-004
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 273 ttcaccatgctggagcttgccaangttgtccaggacaccatcgaccc 319
||||||||||| |||||||| || || |||||||| ||||| |||||
Sbjct: 34 ttcaccatgctcgagcttgctaaggtggtccaggaaaccattgaccc 80
>gb|CV230060.1|CV230060 WS01915.B21_E22 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01915_E22 3', mRNA sequence
Length = 609
Score = 48.1 bits (24), Expect = 5e-004
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 273 ttcaccatgctggagcttgccaangttgtccaggacaccatcgaccc 319
||||||||||| ||||||||| | || |||||||| ||||| |||||
Sbjct: 567 ttcaccatgctcgagcttgcccaggtggtccaggaaaccattgaccc 521
>gb|CV241062.1|CV241062 WS02511.B21_B22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02511_B22 3', mRNA sequence
Length = 521
Score = 48.1 bits (24), Expect = 5e-004
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 273 ttcaccatgctggagcttgccaangttgtccaggacaccatcgaccc 319
||||||||||| ||||||||| | || |||||||| ||||| |||||
Sbjct: 515 ttcaccatgctcgagcttgcccaggtggtccaggaaaccattgaccc 469
>gb|DT469792.1|DT469792 WS01918.C21_O11 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01918_O11 3', mRNA sequence
Length = 557
Score = 48.1 bits (24), Expect = 5e-004
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 273 ttcaccatgctggagcttgccaangttgtccaggacaccatcgaccc 319
||||||||||| ||||||||| | || |||||||| ||||| |||||
Sbjct: 538 ttcaccatgctcgagcttgcccaggtggtccaggaaaccattgaccc 492
>gb|CV251224.1|CV251224 WS0116.B21_E05 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0116_E05 3', mRNA sequence
Length = 611
Score = 46.1 bits (23), Expect = 0.002
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 273 ttcaccatgctggagcttgccaangttgtccaggacaccatcgaccccaacgcacggatc 332
||||||||||| |||||||| | || |||||||| |||||||| || || ||| ||||
Sbjct: 536 ttcaccatgcttgagcttgctcaggtggtccaggaaaccatcgatccaaatgcaaggata 477
Query: 333 gagttc 338
||||||
Sbjct: 476 gagttc 471
>gb|DT492733.1|DT492733 WS02552.C21_C13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02552_C13 3', mRNA sequence
Length = 599
Score = 46.1 bits (23), Expect = 0.002
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 273 ttcaccatgctggagcttgccaangttgtccaggacaccatcgaccccaacgcacggatc 332
||||||||||| |||||||| | || |||||||| |||||||| || || ||| ||||
Sbjct: 524 ttcaccatgcttgagcttgctcaggtggtccaggaaaccatcgatccaaatgcaaggata 465
Query: 333 gagttc 338
||||||
Sbjct: 464 gagttc 459
>gb|DN484314.1|DN484314 G116P87.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G116P87 3', mRNA sequence
Length = 266
Score = 44.1 bits (22), Expect = 0.008
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 405 gggtgggagccaaagatccccctccgcgagggccttcccctcatgg 450
|||||||| ||||||||| || |||||||| |||||||||||||
Sbjct: 232 gggtgggaaccaaagatcaagctgcgcgagggtcttcccctcatgg 187
>gb|CF229028.1|CF229028 PtaXM0020C6C0606 Poplar cDNA library from mature xylem Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 680
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 89 cattgacgatggccgtgttgtcag 112
|||||| |||||||||||||||||
Sbjct: 60 cattgatgatggccgtgttgtcag 83
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 67,737
Number of Sequences: 369679
Number of extensions: 67737
Number of successful extensions: 18258
Number of sequences better than 0.5: 46
Number of HSP's better than 0.5 without gapping: 45
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18137
Number of HSP's gapped (non-prelim): 90
length of query: 805
length of database: 203,408,664
effective HSP length: 19
effective length of query: 786
effective length of database: 196,384,763
effective search space: 154358423718
effective search space used: 154358423718
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)