BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023825.2.1
(1094 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI139333.1|BI139333 F129P50Y Populus flower cDNA library... 214 5e-054
gb|CN518016.1|CN518016 GQ0092.B3_C12 GQ009 Populus trichoca... 192 2e-047
gb|AI166964.1|AI166964 xylem.est.744 Poplar xylem Lambda ZA... 178 3e-043
gb|AI165485.1|AI165485 A084P67U Hybrid aspen plasmid librar... 131 6e-029
gb|CK100090.1|CK100090 B008P57.5pR Hybrid aspen plasmid lib... 131 6e-029
gb|AI166118.1|AI166118 B008P57U Hybrid aspen plasmid librar... 123 2e-026
gb|CA923507.1|CA923507 MTU7CL.P11.D01 Aspen leaf cDNA Libra... 123 2e-026
gb|BU814467.1|BU814467 N030aB03 Populus bark cDNA library P... 117 9e-025
gb|CV254665.1|CV254665 WS0241.B21_N13 PTxD-ICC-N-A-14 Popul... 117 9e-025
gb|CV269227.1|CV269227 WS0207.B21_K17 PTxN-IB-N-A-11 Populu... 117 9e-025
gb|CV271150.1|CV271150 WS0153.B21_O20 PTxN-IB-A-6 Populus t... 117 9e-025
gb|DT474424.1|DT474424 WS01231.BR_O01 PT-GT-FL-A-3 Populus ... 117 9e-025
gb|DT477072.1|DT477072 WS01231.B21_O01 PT-GT-FL-A-3 Populus... 117 9e-025
gb|BU814549.1|BU814549 N030bB03 Populus bark cDNA library P... 111 6e-023
gb|CX658102.1|CX658102 PO01009D09 Poplar SC cDNA library Po... 109 2e-022
gb|CX659734.1|CX659734 PO01013D05 Poplar SC cDNA library Po... 109 2e-022
gb|CX168664.1|CX168664 G03_69-68_13.ab1 leaf inoculated wit... 105 4e-021
gb|CK109845.1|CK109845 N030B03 Populus bark cDNA library Po... 103 1e-020
gb|AJ769501.1|AJ769501 AJ769501 Populus euphratica leaf 3-6... 103 1e-020
gb|CX656238.1|CX656238 PO02049G03 Poplar SC cDNA library Po... 74 1e-011
gb|CX184992.1|CX184992 C05_45-64_05.ab1 leaf inoculated wit... 56 3e-006
gb|CV233172.1|CV233172 WS0199.B21_N15 PT-DX-N-A-10 Populus ... 54 1e-005
gb|CA928297.1|CA928297 MTU6TR.P1.A01 Aspen root cDNA Librar... 42 0.044
gb|CB240307.1|CB240307 PopSC00285 Poplar SC cDNA library Po... 42 0.044
gb|CK095579.1|CK095579 UA15CPA06.3pR Populus dormant cambiu... 42 0.044
>gb|BI139333.1|BI139333 F129P50Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 551
Score = 214 bits (108), Expect = 5e-054
Identities = 294/356 (82%)
Strand = Plus / Plus
Query: 66 tgggatgacagagaatatattgaagatcctgatgaagttaagccagagggctatgattct 125
|||||||| || ||||||||||| |||||| |||| || || |||||||| |||||||||
Sbjct: 161 tgggatgatagggaatatattgaggatcctaatgatgtcaaaccagagggatatgattct 220
Query: 126 atcccaaaacagattcctgatccgaaggacaaaaagcctgacacatgggatgaagatgag 185
||||| ||||||||||||| |||| ||| ||||||| | ||||||||||| |||
Sbjct: 221 atcccccgggagattcctgatcctaaggctaaagagcctgataattgggatgaagaggag 280
Query: 186 gatggaatatggaagcccagaatggtatcaaatccagcatacaagggaccttggaaacgc 245
||||||||||||| ||| | | || |||||||||| ||||| ||||| |||||| |
Sbjct: 281 gatggaatatggaggccacccaagataccaaatccagcttacaaaggaccatggaaaaga 340
Query: 246 aagagaattaaaaatcctaactacaagggtaaatggaagaccccatggatcgataatcca 305
|||| ||| || || || ||||| || || ||||||||||| |||||||||||||| |||
Sbjct: 341 aagaaaatcaagaaccccaactataaaggaaaatggaagactccatggatcgataaccca 400
Query: 306 gagtttgaggatgatccagatctttatgtgctgaagcctttgaagtatattggaattgaa 365
|||||||| |||||||| || ||||||||||| ||||| | |||||| | || ||||||
Sbjct: 401 gagtttgaagatgatcctgacctttatgtgctaaagcccataaagtatgtgggtattgaa 460
Query: 366 gtttggcaggtaaaagctggttcagttttcgacaacattctgatttgtgatgaccc 421
||||||||||| || ||||||||| |||| ||||| || |||| |||||||||||
Sbjct: 461 gtttggcaggtgaaggctggttcaatttttgacaatatattgatctgtgatgaccc 516
>gb|CN518016.1|CN518016 GQ0092.B3_C12 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0092_C12 5', mRNA sequence
Length = 595
Score = 192 bits (97), Expect = 2e-047
Identities = 301/369 (81%)
Strand = Plus / Plus
Query: 66 tgggatgacagagaatatattgaagatcctgatgaagttaagccagagggctatgattct 125
|||||||| ||||||||||| || |||||| |||| || || |||||||| |||||||||
Sbjct: 118 tgggatgatagagaatatatcgaggatcctaatgatgtcaaaccagagggatatgattct 177
Query: 126 atcccaaaacagattcctgatccgaaggacaaaaagcctgacacatgggatgaagatgag 185
|| || ||||||||||||| |||| ||| |||| || ||||||||||| |||
Sbjct: 178 attccccgggagattcctgatcctaaggctaaagagcccgatgattgggatgaagaggag 237
Query: 186 gatggaatatggaagcccagaatggtatcaaatccagcatacaagggaccttggaaacgc 245
||||||||||||| ||| | | || | |||||||| ||||| ||||| |||||| |
Sbjct: 238 gatggaatatggaggccatccaagataccgaatccagcttacaaaggaccatggaaaaga 297
Query: 246 aagagaattaaaaatcctaactacaagggtaaatggaagaccccatggatcgataatcca 305
|||| ||| || || |||||||| ||||| ||||||||||| |||||||||||||| |||
Sbjct: 298 aagaaaatcaagaaccctaactataagggaaaatggaagactccatggatcgataaccca 357
Query: 306 gagtttgaggatgatccagatctttatgtgctgaagcctttgaagtatattggaattgaa 365
|||||||| |||||||| || ||||||||||||||||| | || ||| | || || |||
Sbjct: 358 gagtttgaagatgatcctgacctttatgtgctgaagccagtaaaatatgtgggtatcgaa 417
Query: 366 gtttggcaggtaaaagctggttcagttttcgacaacattctgatttgtgatgaccctgag 425
||||||||||| || ||||| ||| |||| |||||||| |||| ||||||||||| |
Sbjct: 418 gtttggcaggtgaaggctggatcaatttttgacaacatattgatctgtgatgacccacaa 477
Query: 426 tatgcaaga 434
|||||||||
Sbjct: 478 tatgcaaga 486
>gb|AI166964.1|AI166964 xylem.est.744 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 638
Score = 178 bits (90), Expect = 3e-043
Identities = 237/286 (82%)
Strand = Plus / Plus
Query: 136 agattcctgatccgaaggacaaaaagcctgacacatgggatgaagatgaggatggaatat 195
||||||||||||| |||| ||| ||||||| | ||||||||||| |||||||||||||
Sbjct: 8 agattcctgatcctaaggctaaagagcctgataattgggatgaagaggaggatggaatat 67
Query: 196 ggaagcccagaatggtatcaaatccagcatacaagggaccttggaaacgcaagagaatta 255
||| ||| | | || |||||||||| ||||| ||||| |||||| | |||| ||| |
Sbjct: 68 ggaggccacccaagataccaaatccagcttacaaaggaccatggaaaagaaagaaaatca 127
Query: 256 aaaatcctaactacaagggtaaatggaagaccccatggatcgataatccagagtttgagg 315
| || || ||||| || || ||||||||||| |||||||||||||| ||||||||||| |
Sbjct: 128 agaaccccaactataaaggaaaatggaagactccatggatcgataacccagagtttgaag 187
Query: 316 atgatccagatctttatgtgctgaagcctttgaagtatattggaattgaagtttggcagg 375
||||||| || ||||||||||| ||||| | |||||| | || ||||||||||||||||
Sbjct: 188 atgatcctgacctttatgtgctaaagcccataaagtatgtgggtattgaagtttggcagg 247
Query: 376 taaaagctggttcagttttcgacaacattctgatttgtgatgaccc 421
| || ||||||||| |||| ||||| || |||| |||||||||||
Sbjct: 248 tgaaggctggttcaatttttgacaatatattgatctgtgatgaccc 293
>gb|AI165485.1|AI165485 A084P67U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 441
Score = 131 bits (66), Expect = 6e-029
Identities = 126/146 (86%)
Strand = Plus / Plus
Query: 276 aaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatgtg 335
||||||||||| |||||||||||||| ||||||||||| |||||||| || |||||||||
Sbjct: 4 aaatggaagactccatggatcgataacccagagtttgaagatgatcctgacctttatgtg 63
Query: 336 ctgaagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttttc 395
|| ||||| | |||||| | || ||||||||||||||||| || ||||||||| ||||
Sbjct: 64 ctaaagcccataaagtatgtgggtattgaagtttggcaggtgaaggctggttcaattttt 123
Query: 396 gacaacattctgatttgtgatgaccc 421
||||| || |||| |||||||||||
Sbjct: 124 gacaatatattgatctgtgatgaccc 149
>gb|CK100090.1|CK100090 B008P57.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B008P57 5', mRNA sequence
Length = 354
Score = 131 bits (66), Expect = 6e-029
Identities = 126/146 (86%)
Strand = Plus / Plus
Query: 276 aaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatgtg 335
||||||||||| |||||||||||||| ||||||||||| |||||||| || |||||||||
Sbjct: 37 aaatggaagactccatggatcgataacccagagtttgaagatgatcctgacctttatgtg 96
Query: 336 ctgaagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttttc 395
|| ||||| | |||||| | || ||||||||||||||||| || ||||||||| ||||
Sbjct: 97 ctaaagcccataaagtatgtgggtattgaagtttggcaggtgaaggctggttcaattttt 156
Query: 396 gacaacattctgatttgtgatgaccc 421
||||| || |||| |||||||||||
Sbjct: 157 gacaatatattgatctgtgatgaccc 182
>gb|AI166118.1|AI166118 B008P57U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 331
Score = 123 bits (62), Expect = 2e-026
Identities = 122/142 (85%)
Strand = Plus / Plus
Query: 280 ggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatgtgctga 339
||||||| |||||||||||||| ||||||||||| |||||||| || ||||||||||| |
Sbjct: 1 ggaagactccatggatcgataacccagagtttgaagatgatcctgacctttatgtgctaa 60
Query: 340 agcctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttttcgaca 399
|||| | |||||| | || ||||||||||||||||| || ||||||||| |||| ||||
Sbjct: 61 agcccataaagtatgtgggtattgaagtttggcaggtgaaggctggttcaatttttgaca 120
Query: 400 acattctgatttgtgatgaccc 421
| || |||| |||||||||||
Sbjct: 121 atatattgatctgtgatgaccc 142
>gb|CA923507.1|CA923507 MTU7CL.P11.D01 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 671
Score = 123 bits (62), Expect = 2e-026
Identities = 125/146 (85%)
Strand = Plus / Minus
Query: 276 aaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatgtg 335
||||||||||| |||||||||||||| ||||||||||| |||||||| || |||||||||
Sbjct: 666 aaatggaagactccatggatcgataacccagagtttgaagatgatcctgacctttatgtg 607
Query: 336 ctgaagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttttc 395
|| ||||| | || ||| | || ||||||||||||||||| || ||||||||| ||||
Sbjct: 606 ctaaagcccataaactatgtgggtattgaagtttggcaggtgaaggctggttcaattttt 547
Query: 396 gacaacattctgatttgtgatgaccc 421
||||| || |||| |||||||||||
Sbjct: 546 gacaatatattgatctgtgatgaccc 521
>gb|BU814467.1|BU814467 N030aB03 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 620
Score = 117 bits (59), Expect = 9e-025
Identities = 179/219 (81%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
||||||||||||| || ||||| ||||||| ||||||||| || || || || || || |
Sbjct: 356 caaatccagcatataaaggaccatggaaactcaagagaatcaagaacccaaattataaag 415
Query: 274 gtaaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatg 333
| |||||||||| || | || ||||||||||||||||| ||||| || ||||||||||
Sbjct: 416 ggaaatggaagattccttatattgataatccagagtttgaagatgaccctgatctttatg 475
Query: 334 tgctgaagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttt 393
|||| ||||| | || || || || ||||| ||||||||||| || ||||| |||||||
Sbjct: 476 tgcttaagccaataaaatacatcggcattgatgtttggcaggtgaaggctggctcagttt 535
Query: 394 tcgacaacattctgatttgtgatgaccctgagtatgcaa 432
||||| |||||| | |||||||| || ||||||||||
Sbjct: 536 atgacaatattctggtctgtgatgatccagagtatgcaa 574
Score = 65.9 bits (33), Expect = 3e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 66 tgggatgacagagaatatattgaagatcctgatgaagttaagccagagggctatgattct 125
|||||||| |||||||||||||| |||||| |||| || || || ||||| ||||||||
Sbjct: 208 tgggatgatagagaatatattgacgatcctaatgatgtcaaacctgagggatatgattca 267
Query: 126 atcccaaaacagattcc 142
|| |||||| |||||||
Sbjct: 268 attccaaaagagattcc 284
>gb|CV254665.1|CV254665 WS0241.B21_N13 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0241_N13 3', mRNA sequence
Length = 919
Score = 117 bits (59), Expect = 9e-025
Identities = 179/219 (81%)
Strand = Plus / Minus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
||||||||||||| || ||||| ||||||| ||||||||| || || || || || || |
Sbjct: 702 caaatccagcatataaaggaccatggaaactcaagagaatcaagaacccaaattataaag 643
Query: 274 gtaaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatg 333
| |||||||||| || | || ||||||||||||||||| ||||| || ||||||||||
Sbjct: 642 ggaaatggaagattccttatattgataatccagagtttgaagatgaccctgatctttatg 583
Query: 334 tgctgaagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttt 393
|||| ||||| | || || || || ||||| ||||||||||| || ||||| |||||||
Sbjct: 582 tgcttaagccaataaaatacatcggcattgatgtttggcaggtgaaggctggctcagttt 523
Query: 394 tcgacaacattctgatttgtgatgaccctgagtatgcaa 432
||||| |||||| | |||||||| || ||||||||||
Sbjct: 522 atgacaatattctggtctgtgatgatccagagtatgcaa 484
Score = 65.9 bits (33), Expect = 3e-009
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 66 tgggatgacagagaatatattgaagatcctgatgaagttaagccagagggctatgattct 125
|||||||| |||||||||||||| |||||| |||| || || || ||||| ||||||||
Sbjct: 850 tgggatgatagagaatatattgatgatcctaatgatgtcaaacctgagggatatgattca 791
Query: 126 atcccaaaacagattcc 142
|| |||||| |||||||
Sbjct: 790 attccaaaagagattcc 774
>gb|CV269227.1|CV269227 WS0207.B21_K17 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0207_K17 3', mRNA sequence
Length = 680
Score = 117 bits (59), Expect = 9e-025
Identities = 179/219 (81%)
Strand = Plus / Minus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
||||||||||||| || ||||| ||||||| ||||||||| || || || || || || |
Sbjct: 298 caaatccagcatataaaggaccatggaaactcaagagaatcaagaacccaaattataaag 239
Query: 274 gtaaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatg 333
| |||||||||| || | || ||||||||||||||||| ||||| || ||||||||||
Sbjct: 238 ggaaatggaagattccttatattgataatccagagtttgaagatgaccctgatctttatg 179
Query: 334 tgctgaagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttt 393
|||| ||||| | || || || || ||||| ||||||||||| || ||||| |||||||
Sbjct: 178 tgcttaagccaataaaatacatcggcattgatgtttggcaggtgaaggctggctcagttt 119
Query: 394 tcgacaacattctgatttgtgatgaccctgagtatgcaa 432
||||| |||||| | |||||||| || ||||||||||
Sbjct: 118 atgacaatattctggtctgtgatgatccagagtatgcaa 80
Score = 65.9 bits (33), Expect = 3e-009
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 66 tgggatgacagagaatatattgaagatcctgatgaagttaagccagagggctatgattct 125
|||||||| |||||||||||||| |||||| |||| || || || ||||| ||||||||
Sbjct: 446 tgggatgatagagaatatattgatgatcctaatgatgtcaaacctgagggatatgattca 387
Query: 126 atcccaaaacagattcc 142
|| |||||| |||||||
Sbjct: 386 attccaaaagagattcc 370
>gb|CV271150.1|CV271150 WS0153.B21_O20 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0153_O20 3', mRNA sequence
Length = 930
Score = 117 bits (59), Expect = 9e-025
Identities = 179/219 (81%)
Strand = Plus / Minus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
||||||||||||| || ||||| ||||||| ||||||||| || || || || || || |
Sbjct: 298 caaatccagcatataaaggaccatggaaactcaagagaatcaagaacccaaattataaag 239
Query: 274 gtaaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatg 333
| |||||||||| || | || ||||||||||||||||| ||||| || ||||||||||
Sbjct: 238 ggaaatggaagattccttatattgataatccagagtttgaagatgaccctgatctttatg 179
Query: 334 tgctgaagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttt 393
|||| ||||| | || || || || ||||| ||||||||||| || ||||| |||||||
Sbjct: 178 tgcttaagccaataaaatacatcggcattgatgtttggcaggtgaaggctggctcagttt 119
Query: 394 tcgacaacattctgatttgtgatgaccctgagtatgcaa 432
||||| |||||| | |||||||| || ||||||||||
Sbjct: 118 atgacaatattctggtctgtgatgatccagagtatgcaa 80
Score = 65.9 bits (33), Expect = 3e-009
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 66 tgggatgacagagaatatattgaagatcctgatgaagttaagccagagggctatgattct 125
|||||||| |||||||||||||| |||||| |||| || || || ||||| ||||||||
Sbjct: 446 tgggatgatagagaatatattgatgatcctaatgatgtcaaacctgagggatatgattca 387
Query: 126 atcccaaaacagattcc 142
|| |||||| |||||||
Sbjct: 386 attccaaaagagattcc 370
>gb|DT474424.1|DT474424 WS01231.BR_O01 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01231_O01 5', mRNA sequence
Length = 687
Score = 117 bits (59), Expect = 9e-025
Identities = 179/219 (81%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
||||||||||||| || ||||| ||||||| ||||||||| || || || || || || |
Sbjct: 28 caaatccagcatataaaggaccatggaaactcaagagaatcaagaacccaaattataaag 87
Query: 274 gtaaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatg 333
| |||||||||| || | || ||||||||||||||||| ||||| || ||||||||||
Sbjct: 88 ggaaatggaagattccttatattgataatccagagtttgaagatgaccctgatctttatg 147
Query: 334 tgctgaagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttt 393
|||| ||||| | || || || || ||||| ||||||||||| || ||||| |||||||
Sbjct: 148 tgcttaagccaataaaatacatcggcattgatgtttggcaggtgaaggctggctcagttt 207
Query: 394 tcgacaacattctgatttgtgatgaccctgagtatgcaa 432
||||| |||||| | |||||||| || ||||||||||
Sbjct: 208 atgacaatattctggtctgtgatgatccagagtatgcaa 246
>gb|DT477072.1|DT477072 WS01231.B21_O01 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01231_O01 3', mRNA sequence
Length = 687
Score = 117 bits (59), Expect = 9e-025
Identities = 179/219 (81%)
Strand = Plus / Minus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
||||||||||||| || ||||| ||||||| ||||||||| || || || || || || |
Sbjct: 660 caaatccagcatataaaggaccatggaaactcaagagaatcaagaacccaaattataaag 601
Query: 274 gtaaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatg 333
| |||||||||| || | || ||||||||||||||||| ||||| || ||||||||||
Sbjct: 600 ggaaatggaagattccttatattgataatccagagtttgaagatgaccctgatctttatg 541
Query: 334 tgctgaagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttt 393
|||| ||||| | || || || || ||||| ||||||||||| || ||||| |||||||
Sbjct: 540 tgcttaagccaataaaatacatcggcattgatgtttggcaggtgaaggctggctcagttt 481
Query: 394 tcgacaacattctgatttgtgatgaccctgagtatgcaa 432
||||| |||||| | |||||||| || ||||||||||
Sbjct: 480 atgacaatattctggtctgtgatgatccagagtatgcaa 442
>gb|BU814549.1|BU814549 N030bB03 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 616
Score = 111 bits (56), Expect = 6e-023
Identities = 178/219 (81%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
||||||||||||| || ||||| ||||||| ||||||||| || || || || || || |
Sbjct: 375 caaatccagcatataaaggaccatggaaactcaagagaatcaagaacccaaattataaag 434
Query: 274 gtaaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatg 333
| |||||||||| || | || ||||||||||||||||| ||||| || ||||||||||
Sbjct: 435 ggaaatggaagattccttatattgataatccagagtttgaagatgaccctgatctttatg 494
Query: 334 tgctgaagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttt 393
|||| ||||| | || || || || ||||| ||||||||||| || ||||| ||| |||
Sbjct: 495 tgcttaagccaataaaatacatcggcattgatgtttggcaggtgaaggctggctcanttt 554
Query: 394 tcgacaacattctgatttgtgatgaccctgagtatgcaa 432
||||| |||||| | |||||||| || ||||||||||
Sbjct: 555 atgacaatattctggtctgtgatgatccagagtatgcaa 593
Score = 65.9 bits (33), Expect = 3e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 66 tgggatgacagagaatatattgaagatcctgatgaagttaagccagagggctatgattct 125
|||||||| |||||||||||||| |||||| |||| || || || ||||| ||||||||
Sbjct: 227 tgggatgatagagaatatattgacgatcctaatgatgtcaaacctgagggatatgattca 286
Query: 126 atcccaaaacagattcc 142
|| |||||| |||||||
Sbjct: 287 attccaaaagagattcc 303
>gb|CX658102.1|CX658102 PO01009D09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01009D09 5', mRNA sequence
Length = 670
Score = 109 bits (55), Expect = 2e-022
Identities = 178/219 (81%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
||||||||||||| || ||||| ||||||| ||||||||| || || || || || || |
Sbjct: 252 caaatccagcatataaaggaccatggaaactcaagagaatcaagaacccaaattataaag 311
Query: 274 gtaaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatg 333
| |||||||||| || | || ||||||||||||||||| ||||| || ||||| ||||
Sbjct: 312 ggaaatggaagattccttatattgataatccagagtttgaagatgaccctgatctctatg 371
Query: 334 tgctgaagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttt 393
|||| ||||| | || || || || ||||| ||||||||||| || ||||| |||||||
Sbjct: 372 tgcttaagccaataaaatacatcggcattgatgtttggcaggtgaaggctggctcagttt 431
Query: 394 tcgacaacattctgatttgtgatgaccctgagtatgcaa 432
||||| |||||| | |||||||| || ||||||||||
Sbjct: 432 atgacaatattctggtctgtgatgatccagagtatgcaa 470
Score = 65.9 bits (33), Expect = 3e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 66 tgggatgacagagaatatattgaagatcctgatgaagttaagccagagggctatgattct 125
|||||||| |||||||||||||| |||||| |||| || || || ||||| ||||||||
Sbjct: 104 tgggatgatagagaatatattgacgatcctaatgatgtcaaacctgagggatatgattca 163
Query: 126 atcccaaaacagattcc 142
|| |||||| |||||||
Sbjct: 164 attccaaaagagattcc 180
>gb|CX659734.1|CX659734 PO01013D05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01013D05 5', mRNA sequence
Length = 569
Score = 109 bits (55), Expect = 2e-022
Identities = 178/219 (81%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
||||||||||||| || ||||| ||||||| ||||||||| || || || || || || |
Sbjct: 252 caaatccagcatataaaggaccatggaaactcaagagaatcaagaacccaaattataaag 311
Query: 274 gtaaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatg 333
| |||||||||| || | || ||||||||||||||||| ||||| || ||||| ||||
Sbjct: 312 ggaaatggaagattccttatattgataatccagagtttgaagatgaccctgatctctatg 371
Query: 334 tgctgaagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttt 393
|||| ||||| | || || || || ||||| ||||||||||| || ||||| |||||||
Sbjct: 372 tgcttaagccaataaaatacatcggcattgatgtttggcaggtgaaggctggctcagttt 431
Query: 394 tcgacaacattctgatttgtgatgaccctgagtatgcaa 432
||||| |||||| | |||||||| || ||||||||||
Sbjct: 432 atgacaatattctggtctgtgatgatccagagtatgcaa 470
Score = 65.9 bits (33), Expect = 3e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 66 tgggatgacagagaatatattgaagatcctgatgaagttaagccagagggctatgattct 125
|||||||| |||||||||||||| |||||| |||| || || || ||||| ||||||||
Sbjct: 104 tgggatgatagagaatatattgacgatcctaatgatgtcaaacctgagggatatgattca 163
Query: 126 atcccaaaacagattcc 142
|| |||||| |||||||
Sbjct: 164 attccaaaagagattcc 180
>gb|CX168664.1|CX168664 G03_69-68_13.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 694
Score = 105 bits (53), Expect = 4e-021
Identities = 167/205 (81%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
||||||||||||| || ||||| ||||||| ||||||||| || || || || || || |
Sbjct: 487 caaatccagcatataaaggaccatggaaactcaagagaatcaagaacccaaattataaag 546
Query: 274 gtaaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatg 333
| |||||||||| || | || ||||||||||||||||| ||||| || ||||||||||
Sbjct: 547 ggaaatggaagattccttatattgataatccagagtttgaagatgaccctgatctttatg 606
Query: 334 tgctgaagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttt 393
|||| ||||| | || || || || ||||| ||||||||||| || ||||| |||||||
Sbjct: 607 tgcttaagccaataaaatacatcggcattgatgtttggcaggtgaaggctggctcagttt 666
Query: 394 tcgacaacattctgatttgtgatga 418
||||| |||||| | ||||||||
Sbjct: 667 atgacaatattctggtctgtgatga 691
Score = 65.9 bits (33), Expect = 3e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 66 tgggatgacagagaatatattgaagatcctgatgaagttaagccagagggctatgattct 125
|||||||| |||||||||||||| |||||| |||| || || || ||||| ||||||||
Sbjct: 339 tgggatgatagagaatatattgatgatcctaatgatgtcaaacctgagggatatgattca 398
Query: 126 atcccaaaacagattcc 142
|| |||||| |||||||
Sbjct: 399 attccaaaagagattcc 415
Score = 48.1 bits (24), Expect = 7e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaat 253
||||||||||||| || ||||| ||||||| |||||||||
Sbjct: 115 caaatccagcatataaaggaccatggaaactcaagagaat 154
>gb|CK109845.1|CK109845 N030B03 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N030B03 5', mRNA sequence
Length = 636
Score = 103 bits (52), Expect = 1e-020
Identities = 179/220 (81%), Gaps = 1/220 (0%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
||||||||||||| || ||||| ||||||| ||||||||| || || || || || || |
Sbjct: 377 caaatccagcatataaaggaccatggaaactcaagagaatcaagaacccaaattataaag 436
Query: 274 gtaaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatg 333
| |||||||||| || | || ||||||||||||||||| ||||| || ||||||||||
Sbjct: 437 ggaaatggaagattccttatattgataatccagagtttgaagatgaccctgatctttatg 496
Query: 334 tgctgaagcctttgaagtatat-tggaattgaagtttggcaggtaaaagctggttcagtt 392
|||| ||||| | || || || || ||||| ||||||||||| || ||||| ||||||
Sbjct: 497 tgcttaagccaataaaatacatccggcattgatgtttggcaggtgaaggctggctcagtt 556
Query: 393 ttcgacaacattctgatttgtgatgaccctgagtatgcaa 432
| ||||| |||||| | |||||||| || ||||||||||
Sbjct: 557 tatgacaatattctggtctgtgatgatccagagtatgcaa 596
Score = 65.9 bits (33), Expect = 3e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 66 tgggatgacagagaatatattgaagatcctgatgaagttaagccagagggctatgattct 125
|||||||| |||||||||||||| |||||| |||| || || || ||||| ||||||||
Sbjct: 229 tgggatgatagagaatatattgacgatcctaatgatgtcaaacctgagggatatgattca 288
Query: 126 atcccaaaacagattcc 142
|| |||||| |||||||
Sbjct: 289 attccaaaagagattcc 305
>gb|AJ769501.1|AJ769501 AJ769501 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0001000008D03F1, mRNA sequence
Length = 404
Score = 103 bits (52), Expect = 1e-020
Identities = 179/220 (81%), Gaps = 1/220 (0%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttgg-aaacgcaagagaattaaaaatcctaactacaag 272
||||||||||||| || ||||| ||| |||| ||||||||| || || || || || ||
Sbjct: 76 caaatccagcatataaaggaccatggtaaactcaagagaatcaagaacccaaattataaa 135
Query: 273 ggtaaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttat 332
|| |||||||||| || | || ||||||||||||||||| ||||| || ||||| |||
Sbjct: 136 gggaaatggaagattccttatattgataatccagagtttgaagatgaccctgatctctat 195
Query: 333 gtgctgaagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagtt 392
||||| ||||| | || || ||||| ||||| ||||||||||| || ||||| ||||||
Sbjct: 196 gtgcttaagccaataaaatacattggcattgatgtttggcaggtgaaggctggctcagtt 255
Query: 393 ttcgacaacattctgatttgtgatgaccctgagtatgcaa 432
| ||||| |||||| | |||||||| || ||||||||||
Sbjct: 256 tatgacaatattctggtctgtgatgatccagagtatgcaa 295
>gb|CX656238.1|CX656238 PO02049G03 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02049G03 5', mRNA sequence
Length = 193
Score = 73.8 bits (37), Expect = 1e-011
Identities = 111/133 (83%), Gaps = 2/133 (1%)
Strand = Plus / Plus
Query: 66 tgggatgacagagaatatattgaagatcctgatgaagttaagccagagggctatgattct 125
|||||||| || ||||||||||| ||||||||||| || || |||||||| ||||| |||
Sbjct: 62 tgggatgatagggaatatattgaggatcctgatgatgtcaaaccagagggatatga-tct 120
Query: 126 atcccaaaacagattcctgatccgaaggacaaaaagcctgacacatgggatgaagatgag 185
||||| |||||||||||| |||| ||| ||||||| | ||||||||||| |||
Sbjct: 121 atccc-ggggagattcctgatcgtaaggctaaagagcctgataattgggatgaagaggag 179
Query: 186 gatggaatatgga 198
|||||||||||||
Sbjct: 180 gatggaatatgga 192
>gb|CX184992.1|CX184992 C05_45-64_05.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 631
Score = 56.0 bits (28), Expect = 3e-006
Identities = 88/108 (81%)
Strand = Plus / Plus
Query: 327 ctttatgtgctgaagcctttgaagtatattggaattgaagtttggcaggtaaaagctggt 386
||||||||||||||||| | || ||| | || || |||||||||||||| || || ||
Sbjct: 29 ctttatgtgctgaagccaataaaatatgtgggtatcgaagtttggcaggtgaaggccgga 88
Query: 387 tcagttttcgacaacattctgatttgtgatgaccctgagtatgcaaga 434
||| |||| |||||||| |||| ||||||||||| | |||||||||
Sbjct: 89 tcaatttttgacaacatattgatctgtgatgacccacaatatgcaaga 136
>gb|CV233172.1|CV233172 WS0199.B21_N15 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0199_N15 3', mRNA sequence
Length = 564
Score = 54.0 bits (27), Expect = 1e-005
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 363 gaagtttggcaggtaaaagctggttcagttttcgacaacattctgatttgtgatgaccc 421
|||||||||||||| || ||||| ||| |||| |||||||| |||| |||||||||||
Sbjct: 554 gaagtttggcaggtgaaggctggatcaatttttgacaacatattgatctgtgatgaccc 496
>gb|CA928297.1|CA928297 MTU6TR.P1.A01 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 414
Score = 42.1 bits (21), Expect = 0.044
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 412 gtgatgaccctgagtatgcaa 432
|||||||||||||||||||||
Sbjct: 230 gtgatgaccctgagtatgcaa 210
>gb|CB240307.1|CB240307 PopSC00285 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PopSC00285, mRNA sequence
Length = 364
Score = 42.1 bits (21), Expect = 0.044
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 412 gtgatgaccctgagtatgcaa 432
|||||||||||||||||||||
Sbjct: 320 gtgatgaccctgagtatgcaa 340
>gb|CK095579.1|CK095579 UA15CPA06.3pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA15CPA06 3', mRNA sequence
Length = 820
Score = 42.1 bits (21), Expect = 0.044
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 412 gtgatgaccctgagtatgcaa 432
|||||||||||||||||||||
Sbjct: 390 gtgatgaccctgagtatgcaa 370
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 159,028
Number of Sequences: 369679
Number of extensions: 159028
Number of successful extensions: 45743
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45664
Number of HSP's gapped (non-prelim): 53
length of query: 1094
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1075
effective length of database: 196,384,763
effective search space: 211113620225
effective search space used: 211113620225
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)