BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023585.2.1
(635 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ772440.1|AJ772440 AJ772440 Populus euphratica shoot in... 115 2e-024
gb|BU891188.1|BU891188 P047A12 Populus petioles cDNA librar... 105 2e-021
gb|CK097248.1|CK097248 UB44DPH02.3pR Populus active cambium... 105 2e-021
gb|CK100043.1|CK100043 B006P29.5pR Hybrid aspen plasmid lib... 94 8e-018
gb|BU819274.1|BU819274 UA41BPG08 Populus tremula cambium cD... 90 1e-016
gb|CK096964.1|CK096964 UB34DPA12.3pR Populus active cambium... 90 1e-016
gb|BI127370.1|BI127370 G059P39Y Populus cambium cDNA librar... 86 2e-015
gb|BU894173.1|BU894173 X003H07 Populus wood cDNA library Po... 86 2e-015
gb|BU894478.1|BU894478 X010A02 Populus wood cDNA library Po... 86 2e-015
gb|CV231236.1|CV231236 WS0193.B21_O22 PT-DX-N-A-10 Populus ... 86 2e-015
gb|CV267224.1|CV267224 WS02031.B21_C18 PTxN-IB-N-A-11 Popul... 86 2e-015
gb|CV269160.1|CV269160 WS0207.B21_H21 PTxN-IB-N-A-11 Populu... 86 2e-015
gb|BU896276.1|BU896276 X038C04 Populus wood cDNA library Po... 78 5e-013
gb|BU896297.1|BU896297 X038E11 Populus wood cDNA library Po... 78 5e-013
gb|BU898140.1|BU898140 X075D09 Populus wood cDNA library Po... 78 5e-013
gb|CK099351.1|CK099351 A063P66.5pR Hybrid aspen plasmid lib... 78 5e-013
gb|AJ770191.1|AJ770191 AJ770191 Populus euphratica leaf 3-6... 78 5e-013
gb|CV241850.1|CV241850 WS02513.B21_G18 PT-MB-N-A-15 Populus... 78 5e-013
gb|CV274847.1|CV274847 WS0174.B21.1_J06 PTxD-NR-A-8 Populus... 78 5e-013
gb|DV464515.1|DV464515 MTUNUL1.P28.E03 NUL Populus fremonti... 78 5e-013
gb|BU812023.1|BU812023 UL91TD02 Populus leaf cDNA library P... 72 3e-011
gb|CV227387.1|CV227387 WS0167.B21_A17 PT-DX-A-7 Populus tri... 70 1e-010
gb|CX171314.1|CX171314 G11_69-94_13.ab1 leaf inoculated wit... 70 1e-010
gb|DT516220.1|DT516220 WS02430.B21_L23 PTxD-ICC-N-A-14 Popu... 70 1e-010
gb|BU895787.1|BU895787 X031A06 Populus wood cDNA library Po... 68 4e-010
gb|AJ773923.1|AJ773923 AJ773923 Populus euphratica shoot 3-... 68 4e-010
gb|DN500128.1|DN500128 UB48DPE03.5pR Populus active cambium... 68 4e-010
gb|AI166241.1|AI166241 a063p66u Hybrid aspen plasmid librar... 62 3e-008
gb|CV276089.1|CV276089 WS0178.B21.1_J13 PTxD-NR-A-8 Populus... 62 3e-008
gb|BU880106.1|BU880106 UM41TE06 Populus flower cDNA library... 60 1e-007
gb|CV228921.1|CV228921 WS01911.B21_K08 PT-DX-N-A-10 Populus... 60 1e-007
gb|BU890263.1|BU890263 P034B07 Populus petioles cDNA librar... 56 2e-006
gb|CK117051.1|CK117051 B024P66 Hybrid aspen plasmid library... 56 2e-006
gb|BU818866.1|BU818866 UA35CPF05 Populus tremula cambium cD... 48 4e-004
gb|DV464201.1|DV464201 MTUNUL1.P24.D07 NUL Populus fremonti... 48 4e-004
gb|BU894661.1|BU894661 X012H09 Populus wood cDNA library Po... 46 0.002
gb|CK088784.1|CK088784 A072P19.3pR Hybrid aspen plasmid lib... 42 0.025
gb|CN524305.1|CN524305 GQ015M13.T3_E09 GQ015 Populus tricho... 40 0.100
gb|AJ777572.1|AJ777572 AJ777572 Populus euphratica root 3-6... 40 0.100
gb|BP935857.1|BP935857 BP935857 full-length enriched poplar... 40 0.100
gb|BP936199.1|BP936199 BP936199 full-length enriched poplar... 40 0.100
gb|DN488212.1|DN488212 R041G07.3pR Populus root cDNA librar... 40 0.100
gb|DN490157.1|DN490157 UB48DPE03.3pR Populus active cambium... 40 0.100
gb|DT480982.1|DT480982 WS02530.BR_I12 PT-MB-N-A-15 Populus ... 40 0.100
gb|DT486279.1|DT486279 WS02530.B21_I12 PT-MB-N-A-15 Populus... 40 0.100
gb|CX174090.1|CX174090 A12_69-28_02.ab1 leaf inoculated wit... 38 0.39
>gb|AJ772440.1|AJ772440 AJ772440 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700006E12F1, mRNA sequence
Length = 418
Score = 115 bits (58), Expect = 2e-024
Identities = 151/182 (82%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
|||||||| ||||| |||||||| |||||||| || ||||| ||||||||||| ||||||
Sbjct: 119 gagtttgacttctatctctgtagccatgctggtattcaggggacaagtaggccagctcac 178
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
|| ||||| | |||||||||||||| |||||||| || | ||| || | ||||||||
Sbjct: 179 tatcatgttttgtgggatgagaacaacttcacagctgatggaatccagtctttgacaaac 238
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
|| || |||||||| ||||| ||||||| ||||| ||||| || || ||||| ||||||
Sbjct: 239 aatctctgctacacgtatgctaggtgcactcgctctgtttcagtagttcctccagcatac 298
Query: 181 ta 182
||
Sbjct: 299 ta 300
>gb|BU891188.1|BU891188 P047A12 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 494
Score = 105 bits (53), Expect = 2e-021
Identities = 185/229 (80%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
|||||| | ||||| || |||||||||||||| || ||||| ||||| | || |||||
Sbjct: 24 gagtttaacttctatctgtgtagtcatgctgggattcagggtacaagccgtccagctcat 83
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
|||||||| || ||||| |||||||| ||||| || || | |||| | || ||||||
Sbjct: 84 taccatgtactttgggacgagaacaagttcactgctgatgggttgcagtcccttacaaac 143
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
|| ||||||||||| ||||| | ||||| || || ||||| |||| || |||||||||
Sbjct: 144 aatctttgctacacatatgcaagatgcacgcgttctgtttccattgtgccacctgcatac 203
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
|||||||| || || |||||||| || || |||||||||||||||||||
Sbjct: 204 tacgcacatcttgctgcattccgagctcgtttctacatggaaccagaga 252
>gb|CK097248.1|CK097248 UB44DPH02.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB44DPH02 3', mRNA sequence
Length = 762
Score = 105 bits (53), Expect = 2e-021
Identities = 185/229 (80%)
Strand = Plus / Minus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
|||||||| ||||| | |||||||||||||| || ||||| ||||| | || |||||
Sbjct: 458 gagtttgacttctatttgtgtagtcatgctgggattcagggtacaagccgtccagctcat 399
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
|||||||| || ||||| |||||||| ||||| || || | |||| | || ||||||
Sbjct: 398 taccatgtactttgggacgagaacaagttcactgctgatgggttgcagtcccttacaaac 339
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
|| ||||||||||| ||||| | ||||| || || ||||| |||| || |||||||||
Sbjct: 338 aatctttgctacacatatgcaagatgcacgcgttctgtttccattgtgccacctgcatac 279
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
|||||||| || || |||||||| || || |||||||||||||||||||
Sbjct: 278 tacgcacatcttgctgcattccgagctcgtttctacatggaaccagaga 230
>gb|CK100043.1|CK100043 B006P29.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B006P29 5', mRNA sequence
Length = 475
Score = 93.7 bits (47), Expect = 8e-018
Identities = 137/167 (82%)
Strand = Plus / Plus
Query: 16 ctctgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgg 75
|||||||| |||||||| || |||||||||||||| || || ||||| ||||| | |||
Sbjct: 274 ctctgtagccatgctggtattcagggaacaagtagaccagcacactatcatgttttgtgg 333
Query: 76 gatgagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctttgctacact 135
|||||||||||||||||||| || | ||| ||| | |||||||||| || || |||||
Sbjct: 334 gatgagaacaatttcacagctgatggaatccaatccttgacaaacaatctctggtacaca 393
Query: 136 tatgcccggtgcacacgctcggtttctgttgtccctcctgcatacta 182
|| || ||||||| ||||| ||||| || || ||||| ||||||||
Sbjct: 394 tacgcaaggtgcacgcgctctgtttcagtggttcctcccgcatacta 440
>gb|BU819274.1|BU819274 UA41BPG08 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 627
Score = 89.7 bits (45), Expect = 1e-016
Identities = 141/173 (81%)
Strand = Plus / Plus
Query: 16 ctctgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgg 75
|||||||| |||||||| || |||||||||||||| || || ||||| ||||| | |||
Sbjct: 56 ctctgtagccatgctggtattcagggaacaagtagaccagcacactatcatgttttgtgg 115
Query: 76 gatgagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctttgctacact 135
|||||||||||||||||||| || | ||| || | |||||||||| || || |||||
Sbjct: 116 gatgagaacaatttcacagctgatggaatccagtccttgacaaacaatctctgttacaca 175
Query: 136 tatgcccggtgcacacgctcggtttctgttgtccctcctgcatactacgcaca 188
|| || ||||||| ||||| ||||| || || ||||| |||||||| |||||
Sbjct: 176 tacgcaaggtgcacgcgctctgtttcagtggttcctcccgcatactatgcaca 228
>gb|CK096964.1|CK096964 UB34DPA12.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB34DPA12 3', mRNA sequence
Length = 646
Score = 89.7 bits (45), Expect = 1e-016
Identities = 141/173 (81%)
Strand = Plus / Minus
Query: 16 ctctgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgg 75
|||||||| |||||||| || |||||||||||||| || || ||||| ||||| | |||
Sbjct: 546 ctctgtagccatgctggtattcagggaacaagtagaccagcacactatcatgttttgtgg 487
Query: 76 gatgagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctttgctacact 135
|||||||||||||||||||| || | ||| || | |||||||||| || || |||||
Sbjct: 486 gatgagaacaatttcacagctgatggaatccagtccttgacaaacaatctctgttacaca 427
Query: 136 tatgcccggtgcacacgctcggtttctgttgtccctcctgcatactacgcaca 188
|| || ||||||| ||||| ||||| || || ||||| |||||||| |||||
Sbjct: 426 tacgcgaggtgcacgcgctctgtttcagtggttcctcccgcatactatgcaca 374
>gb|BI127370.1|BI127370 G059P39Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 502
Score = 85.7 bits (43), Expect = 2e-015
Identities = 169/211 (80%)
Strand = Plus / Plus
Query: 19 tgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggat 78
||||||||||| || || ||||| ||||| | || |||||||||||||| || ||||||
Sbjct: 281 tgtagtcatgccgggattcagggcacaagccgtccagctcactaccatgtactttgggat 340
Query: 79 gagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctttgctacacttat 138
|||||||| || || || || | |||| | ||||||||||| || |||||||| |||
Sbjct: 341 gagaacaagtttactgctgatgggttgcagtccctgacaaacaatctgtgctacacatat 400
Query: 139 gcccggtgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagca 198
|| || ||||| || || ||||| |||| || ||||||||||| || || || || |||
Sbjct: 401 gcacgatgcacgcgttctgtttccattgtgccacctgcatactatgctcatcttgctgca 460
Query: 199 ttccgggcgcggttctacatggaaccagaga 229
|| || || || |||||||||||||||||||
Sbjct: 461 tttcgagctcgtttctacatggaaccagaga 491
>gb|BU894173.1|BU894173 X003H07 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 618
Score = 85.7 bits (43), Expect = 2e-015
Identities = 169/211 (80%)
Strand = Plus / Plus
Query: 19 tgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggat 78
||||||||||| || || ||||| ||||| | || |||||||||||||| || ||||||
Sbjct: 361 tgtagtcatgccgggattcagggcacaagccgtccagctcactaccatgtactttgggat 420
Query: 79 gagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctttgctacacttat 138
|||||||| || || || || | |||| | ||||||||||| || |||||||| |||
Sbjct: 421 gagaacaagtttactgctgatgggttgcagtccctgacaaacaatctgtgctacacatat 480
Query: 139 gcccggtgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagca 198
|| || ||||| || || ||||| |||| || ||||||||||| || || || || |||
Sbjct: 481 gcacgatgcacgcgttctgtttccattgtgccacctgcatactatgctcatcttgctgca 540
Query: 199 ttccgggcgcggttctacatggaaccagaga 229
|| || || || |||||||||||||||||||
Sbjct: 541 tttcgagctcgtttctacatggaaccagaga 571
>gb|BU894478.1|BU894478 X010A02 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 650
Score = 85.7 bits (43), Expect = 2e-015
Identities = 169/211 (80%)
Strand = Plus / Plus
Query: 19 tgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggat 78
||||||||||| || || ||||| ||||| | || |||||||||||||| || ||||||
Sbjct: 93 tgtagtcatgccgggattcagggcacaagccgtccagctcactaccatgtactttgggat 152
Query: 79 gagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctttgctacacttat 138
|||||||| || || || || | |||| | ||||||||||| || |||||||| |||
Sbjct: 153 gagaacaagtttactgctgatgggttgcagtccctgacaaacaatctgtgctacacatat 212
Query: 139 gcccggtgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagca 198
|| || ||||| || || ||||| |||| || ||||||||||| || || || || |||
Sbjct: 213 gcacgatgcacgcgttctgtttccattgtgccacctgcatactatgctcatcttgctgca 272
Query: 199 ttccgggcgcggttctacatggaaccagaga 229
|| || || || |||||||||||||||||||
Sbjct: 273 tttcgagctcgtttctacatggaaccagaga 303
>gb|CV231236.1|CV231236 WS0193.B21_O22 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0193_O22 3', mRNA sequence
Length = 875
Score = 85.7 bits (43), Expect = 2e-015
Identities = 169/211 (80%)
Strand = Plus / Minus
Query: 19 tgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggat 78
|||||||||||||| || ||||| ||||| | || ||||| |||||||| || ||||||
Sbjct: 575 tgtagtcatgctgggattcagggtacaagccgtccagctcattaccatgtactttgggat 516
Query: 79 gagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctttgctacacttat 138
|||||||| ||||| || || | |||| | || |||||||| ||||||||||| |||
Sbjct: 515 gagaacaagttcactgctgatgggttgcagtctcttacaaacaatctttgctacacatat 456
Query: 139 gcccggtgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagca 198
|| | ||||| || || ||||| |||| || |||||||| || ||||| || || |||
Sbjct: 455 gcaagatgcacgcgttctgtttccattgtgccacctgcatattatgcacatcttgctgca 396
Query: 199 ttccgggcgcggttctacatggaaccagaga 229
||||| || || |||||||||||||| ||||
Sbjct: 395 ttccgagctcgtttctacatggaaccggaga 365
Score = 42.1 bits (21), Expect = 0.025
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 280 gtgaagcccctgcctgctgtgaaggagaaggtgaaaagggtgatgttctactg 332
|||| |||||||||||| |||||||||| || || |||| |||||||||||
Sbjct: 266 gtgaggcccctgcctgccttgaaggagaatgtcaagcgggttatgttctactg 214
>gb|CV267224.1|CV267224 WS02031.B21_C18 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02031_C18 3', mRNA sequence
Length = 960
Score = 85.7 bits (43), Expect = 2e-015
Identities = 169/211 (80%)
Strand = Plus / Minus
Query: 19 tgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggat 78
|||||||||||||| || ||||| ||||| | || ||||| |||||||| || ||||||
Sbjct: 667 tgtagtcatgctgggattcagggcacaagccgtccagctcattaccatgtactttgggat 608
Query: 79 gagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctttgctacacttat 138
|||||||| || || || || | |||| | ||||||||||| ||||||||||| |||
Sbjct: 607 gagaacaagtttactgctgatgggctgcagtccctgacaaacaatctttgctacacatat 548
Query: 139 gcccggtgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagca 198
|| || ||||| || || ||||| |||| || ||||||||||| || || || || |||
Sbjct: 547 gcacgatgcacgcgatctgtttccattgtgccacctgcatactatgctcatcttgctgca 488
Query: 199 ttccgggcgcggttctacatggaaccagaga 229
|| || || || ||||||||||| |||||||
Sbjct: 487 tttcgagctcgtttctacatggagccagaga 457
>gb|CV269160.1|CV269160 WS0207.B21_H21 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0207_H21 3', mRNA sequence
Length = 688
Score = 85.7 bits (43), Expect = 2e-015
Identities = 169/211 (80%)
Strand = Plus / Minus
Query: 19 tgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggat 78
|||||||||||||| || ||||| ||||| | || ||||| |||||||| || ||||||
Sbjct: 667 tgtagtcatgctgggattcagggcacaagccgtccagctcattaccatgtactttgggat 608
Query: 79 gagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctttgctacacttat 138
|||||||| || || || || | |||| | ||||||||||| ||||||||||| |||
Sbjct: 607 gagaacaagtttactgctgatgggctgcagtccctgacaaacaatctttgctacacatat 548
Query: 139 gcccggtgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagca 198
|| || ||||| || || ||||| |||| || ||||||||||| || || || || |||
Sbjct: 547 gcacgatgcacgcgatctgtttccattgtgccacctgcatactatgctcatcttgctgca 488
Query: 199 ttccgggcgcggttctacatggaaccagaga 229
|| || || || ||||||||||| |||||||
Sbjct: 487 tttcgagctcgtttctacatggagccagaga 457
>gb|BU896276.1|BU896276 X038C04 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 679
Score = 77.8 bits (39), Expect = 5e-013
Identities = 168/211 (79%)
Strand = Plus / Plus
Query: 19 tgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggat 78
||||||||||| || || ||||| ||||| | || ||||| |||||||| || ||||||
Sbjct: 80 tgtagtcatgccgggattcagggcacaagccgtccggctcattaccatgtactttgggat 139
Query: 79 gagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctttgctacacttat 138
|||||||| || || || || | |||| | ||||||||||| || |||||||| |||
Sbjct: 140 gagaacaagtttactgctgatgggttgcagtccctgacaaacaatctgtgctacacatat 199
Query: 139 gcccggtgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagca 198
|| || ||||| || || ||||| |||| || ||||||||||| || || || || |||
Sbjct: 200 gcacgatgcacgcgttctgtttccattgtgccacctgcatactatgctcatcttgctgca 259
Query: 199 ttccgggcgcggttctacatggaaccagaga 229
|| || || || |||||||||||||||||||
Sbjct: 260 tttcgagctcgtttctacatggaaccagaga 290
>gb|BU896297.1|BU896297 X038E11 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 666
Score = 77.8 bits (39), Expect = 5e-013
Identities = 168/211 (79%)
Strand = Plus / Plus
Query: 19 tgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggat 78
||||||||||| || || ||||| ||||| | || ||||| |||||||| || ||||||
Sbjct: 80 tgtagtcatgccgggattcagggcacaagccgtccggctcattaccatgtactttgggat 139
Query: 79 gagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctttgctacacttat 138
|||||||| || || || || | |||| | ||||||||||| || |||||||| |||
Sbjct: 140 gagaacaagtttactgctgatgggttgcagtccctgacaaacaatctgtgctacacatat 199
Query: 139 gcccggtgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagca 198
|| || ||||| || || ||||| |||| || ||||||||||| || || || || |||
Sbjct: 200 gcacgatgcacgcgttctgtttccattgtgccacctgcatactatgctcatcttgctgca 259
Query: 199 ttccgggcgcggttctacatggaaccagaga 229
|| || || || |||||||||||||||||||
Sbjct: 260 tttcgagctcgtttctacatggaaccagaga 290
>gb|BU898140.1|BU898140 X075D09 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 623
Score = 77.8 bits (39), Expect = 5e-013
Identities = 168/211 (79%)
Strand = Plus / Plus
Query: 19 tgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggat 78
||||||||||| || || ||||| ||||| | || |||||||||||||| || ||||||
Sbjct: 154 tgtagtcatgccgggattcagggcacaagccgtccagctcactaccatgtactttgggat 213
Query: 79 gagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctttgctacacttat 138
|||||||| || || || || | |||| | ||||||||||| || |||||||| |||
Sbjct: 214 gagaacaagtttactgctgatgggttgcagtccctgacaaacaatctgtgctacacatat 273
Query: 139 gcccggtgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagca 198
|| || ||||| || || ||||| |||| || ||||||||||| || || || | |||
Sbjct: 274 gcgcgatgcacgcgttctgtttccattgtgccacctgcatactatgctcatcttgttgca 333
Query: 199 ttccgggcgcggttctacatggaaccagaga 229
|| || || || |||||||||||||||||||
Sbjct: 334 tttcgagctcgtttctacatggaaccagaga 364
>gb|CK099351.1|CK099351 A063P66.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A063P66 5', mRNA sequence
Length = 546
Score = 77.8 bits (39), Expect = 5e-013
Identities = 168/211 (79%)
Strand = Plus / Plus
Query: 19 tgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggat 78
||||||||||| || || ||||| ||||| | || ||||| |||||||| || ||||||
Sbjct: 70 tgtagtcatgccgggattcagggcacaagccgtccggctcattaccatgtactttgggat 129
Query: 79 gagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctttgctacacttat 138
|||||||| || || || || | |||| | ||||||||||| || |||||||| |||
Sbjct: 130 gagaacaagtttactgctgatgggttgcagtccctgacaaacaatctgtgctacacatat 189
Query: 139 gcccggtgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagca 198
|| || ||||| || || ||||| |||| || ||||||||||| || || || || |||
Sbjct: 190 gcacgatgcacgcgttctgtttccattgtgccacctgcatactatgctcatcttgctgca 249
Query: 199 ttccgggcgcggttctacatggaaccagaga 229
|| || || || |||||||||||||||||||
Sbjct: 250 tttcgagctcgtttctacatggaaccagaga 280
>gb|AJ770191.1|AJ770191 AJ770191 Populus euphratica leaf 3-6 months, adult Populus
euphratica cDNA clone P0001100008E12F1, mRNA sequence
Length = 423
Score = 77.8 bits (39), Expect = 5e-013
Identities = 96/115 (83%)
Strand = Plus / Plus
Query: 115 acaaacaacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcct 174
|||||||| ||||||||||| ||||| | ||||| || || ||||| |||| || |||
Sbjct: 47 acaaacaatctttgctacacatatgcaagatgcacccgttctgtttccattgtgccacct 106
Query: 175 gcatactacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
|||||||| ||||| || || |||||||| || || |||||||||||||||||||
Sbjct: 107 gcatactatgcacatcttgccgcattccgagctcgtttctacatggaaccagaga 161
Score = 42.1 bits (21), Expect = 0.025
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 280 gtgaagcccctgcctgctgtgaaggagaaggtgaaaagggtgatgttctactg 332
|||| |||||||||||| |||||||||| || || |||| |||||||||||
Sbjct: 260 gtgaggcccctgcctgccttgaaggagaatgttaagcgggttatgttctactg 312
>gb|CV241850.1|CV241850 WS02513.B21_G18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02513_G18 3', mRNA sequence
Length = 677
Score = 77.8 bits (39), Expect = 5e-013
Identities = 168/211 (79%)
Strand = Plus / Minus
Query: 19 tgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggat 78
|||||||| ||||| || ||||| ||||| | || ||||| |||||||| || ||||||
Sbjct: 656 tgtagtcacgctgggattcagggcacaagccgtccagctcattaccatgtactttgggat 597
Query: 79 gagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctttgctacacttat 138
|||||||| || || || || | |||| | ||||||||||| ||||||||||| |||
Sbjct: 596 gagaacaagtttactgctgatgggctgcagtccctgacaaacaatctttgctacacatat 537
Query: 139 gcccggtgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagca 198
|| || ||||| || || ||||| |||| || ||||||||||| || || || || |||
Sbjct: 536 gcacgatgcacgcgatctgtttccattgtgccacctgcatactatgctcatcttgctgca 477
Query: 199 ttccgggcgcggttctacatggaaccagaga 229
|| || || || ||||||||||| |||||||
Sbjct: 476 tttcgagctcgtttctacatggagccagaga 446
>gb|CV274847.1|CV274847 WS0174.B21.1_J06 PTxD-NR-A-8 Populus trichocarpa x Populus
deltoides cDNA clone WS0174_J06 3', mRNA sequence
Length = 849
Score = 77.8 bits (39), Expect = 5e-013
Identities = 168/211 (79%)
Strand = Plus / Minus
Query: 19 tgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggat 78
|||||||| ||||| || ||||| ||||| | || ||||| |||||||| || ||||||
Sbjct: 656 tgtagtcacgctgggattcagggcacaagccgtccagctcattaccatgtactttgggat 597
Query: 79 gagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctttgctacacttat 138
|||||||| || || || || | |||| | ||||||||||| ||||||||||| |||
Sbjct: 596 gagaacaagtttactgctgatgggctgcagtccctgacaaacaatctttgctacacatat 537
Query: 139 gcccggtgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagca 198
|| || ||||| || || ||||| |||| || ||||||||||| || || || || |||
Sbjct: 536 gcacgatgcacgcgatctgtttccattgtgccacctgcatactatgctcatcttgctgca 477
Query: 199 ttccgggcgcggttctacatggaaccagaga 229
|| || || || ||||||||||| |||||||
Sbjct: 476 tttcgagctcgtttctacatggagccagaga 446
>gb|DV464515.1|DV464515 MTUNUL1.P28.E03 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 830
Score = 77.8 bits (39), Expect = 5e-013
Identities = 168/211 (79%)
Strand = Plus / Minus
Query: 19 tgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggat 78
|||||||| ||||| || ||||| ||||| | || ||||| |||||||| || ||||||
Sbjct: 651 tgtagtcacgctgggattcagggcacaagccgtccagctcattaccatgtactttgggat 592
Query: 79 gagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctttgctacacttat 138
|||||||| || || || || | |||| | ||||||||||| ||||||||||| |||
Sbjct: 591 gagaacaagtttactgctgatgggctgcagtccctgacaaacaatctttgctacacatat 532
Query: 139 gcccggtgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagca 198
|| || ||||| || || ||||| |||| || ||||||||||| || || || || |||
Sbjct: 531 gcacgatgcacgcgatctgtttccattgtgccacctgcatactatgctcatcttgctgca 472
Query: 199 ttccgggcgcggttctacatggaaccagaga 229
|| || || || ||||||||||| |||||||
Sbjct: 471 tttcgagctcgtttctacatggagccagaga 441
>gb|BU812023.1|BU812023 UL91TD02 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 616
Score = 71.9 bits (36), Expect = 3e-011
Identities = 167/211 (79%)
Strand = Plus / Plus
Query: 19 tgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggat 78
||||||||||| || || ||||| ||||| | || ||||| |||||||| || ||||||
Sbjct: 317 tgtagtcatgccgggattcagggcacaagccgtccggctcattaccatgtactttgggat 376
Query: 79 gagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctttgctacacttat 138
|||||||| || || || || | |||| | ||||||||||| || |||||||| |||
Sbjct: 377 gagaacaagtttactgctgatgggttgcagtccctgacaaacaatctgtgctacacatat 436
Query: 139 gcccggtgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagca 198
|| || ||||| || || ||||| |||| || ||||||||||| || || || || |||
Sbjct: 437 gcacgatgcacgcgttctgtttccattgtgccacctgcatactatgctcatcttgctgca 496
Query: 199 ttccgggcgcggttctacatggaaccagaga 229
|| || || || ||||||||||||||||||
Sbjct: 497 tttcgagctcgtntctacatggaaccagaga 527
>gb|CV227387.1|CV227387 WS0167.B21_A17 PT-DX-A-7 Populus trichocarpa cDNA clone WS0167_A17
3', mRNA sequence
Length = 709
Score = 69.9 bits (35), Expect = 1e-010
Identities = 167/211 (79%)
Strand = Plus / Plus
Query: 19 tgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggat 78
|||||||| ||||| || ||||| ||||| | || ||||| |||||||| || ||||||
Sbjct: 39 tgtagtcacgctgggattcagggcacaagccgtccagctcattaccatgtactttgggat 98
Query: 79 gagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctttgctacacttat 138
|||||||| || || || || | |||| | ||||| ||||| ||||||||||| |||
Sbjct: 99 gagaacaagtttactgctgatgggctgcagtccctgacgaacaatctttgctacacatat 158
Query: 139 gcccggtgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagca 198
|| || ||||| || || ||||| |||| || ||||||||||| || || || || |||
Sbjct: 159 gcacgatgcacgcgatctgtttccattgtgccacctgcatactatgctcatcttgctgca 218
Query: 199 ttccgggcgcggttctacatggaaccagaga 229
|| || || || ||||||||||| |||||||
Sbjct: 219 tttcgagctcgtttctacatggagccagaga 249
>gb|CX171314.1|CX171314 G11_69-94_13.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 555
Score = 69.9 bits (35), Expect = 1e-010
Identities = 167/211 (79%)
Strand = Plus / Plus
Query: 19 tgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggat 78
|||||||| ||||| || ||||| ||||| | || ||||| |||||||| || ||||||
Sbjct: 117 tgtagtcacgctgggattcagggcacaagccgtccagctcattaccatgtactttgggat 176
Query: 79 gagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctttgctacacttat 138
|||||||| || || || || | |||| | ||||| ||||| ||||||||||| |||
Sbjct: 177 gagaacaagtttactgctgatgggctgcagtccctgacgaacaatctttgctacacatat 236
Query: 139 gcccggtgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagca 198
|| || ||||| || || ||||| |||| || ||||||||||| || || || || |||
Sbjct: 237 gcacgatgcacgcgatctgtttccattgtgccacctgcatactatgctcatcttgctgca 296
Query: 199 ttccgggcgcggttctacatggaaccagaga 229
|| || || || ||||||||||| |||||||
Sbjct: 297 tttcgagctcgtttctacatggagccagaga 327
>gb|DT516220.1|DT516220 WS02430.B21_L23 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02430_L23 3', mRNA sequence
Length = 910
Score = 69.9 bits (35), Expect = 1e-010
Identities = 167/211 (79%)
Strand = Plus / Minus
Query: 19 tgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggat 78
|||||||| ||||| || ||||| ||||| | || ||||| |||||||| || ||||||
Sbjct: 680 tgtagtcacgctgggattcagggcacaagccgtccagctcattaccatgtactttgggat 621
Query: 79 gagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctttgctacacttat 138
|||||||| || || || || | |||| | ||||||||||| ||||||||||| |||
Sbjct: 620 gagaacaagtttactgctgatgggctgcagtccctgacaaacaatctttgctacacatat 561
Query: 139 gcccggtgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagca 198
|| || ||||| | || ||||| |||| || ||||||||||| || || || || |||
Sbjct: 560 gcacgatgcacgagatctgtttccattgtgccacctgcatactatgctcatcttgctgca 501
Query: 199 ttccgggcgcggttctacatggaaccagaga 229
|| || || || ||||||||||| |||||||
Sbjct: 500 tttcgagctcgtttctacatggagccagaga 470
>gb|BU895787.1|BU895787 X031A06 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 568
Score = 67.9 bits (34), Expect = 4e-010
Identities = 97/118 (82%)
Strand = Plus / Plus
Query: 112 ctgacaaacaacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccct 171
||||||||||| || |||||||| ||||| || ||||| || || ||||| |||| ||
Sbjct: 75 ctgacaaacaatctgtgctacacatatgcacgatgcacgcgttctgtttccattgtgcca 134
Query: 172 cctgcatactacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
||||||||||| || || || || ||||| || || || |||||||||||||||||||
Sbjct: 135 cctgcatactatgctcatcttgctgcatttcgagctcgtttctacatggaaccagaga 192
>gb|AJ773923.1|AJ773923 AJ773923 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300006F03F1, mRNA sequence
Length = 586
Score = 67.9 bits (34), Expect = 4e-010
Identities = 97/118 (82%)
Strand = Plus / Plus
Query: 112 ctgacaaacaacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccct 171
||||||||||| ||||||||||| |||||||| ||||| || || ||||| | || ||
Sbjct: 31 ctgacaaacaatctttgctacacatatgcccgatgcacgcgatctgtttccatagtgcca 90
Query: 172 cctgcatactacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
||||||||||| || || || || ||||| || || || ||||||||||| |||||||
Sbjct: 91 cctgcatactatgctcatcttgctgcatttcgagcccgtttctacatggagccagaga 148
>gb|DN500128.1|DN500128 UB48DPE03.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB48DPE03 5', mRNA sequence
Length = 522
Score = 67.9 bits (34), Expect = 4e-010
Identities = 97/118 (82%)
Strand = Plus / Plus
Query: 112 ctgacaaacaacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccct 171
||||||||||| || |||||||| ||||| || ||||| || || ||||| |||| ||
Sbjct: 66 ctgacaaacaatctgtgctacacatatgcacgatgcacgcgttctgtttccattgtgcca 125
Query: 172 cctgcatactacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
||||||||||| || || || || ||||| || || || |||||||||||||||||||
Sbjct: 126 cctgcatactatgctcatcttgctgcatttcgagctcgtttctacatggaaccagaga 183
>gb|AI166241.1|AI166241 a063p66u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 382
Score = 61.9 bits (31), Expect = 3e-008
Identities = 96/118 (81%)
Strand = Plus / Plus
Query: 112 ctgacaaacaacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccct 171
||||||||||| || |||||||| |||| || ||||| || || ||||| |||| ||
Sbjct: 138 ctgacaaacaatctgtgctacacanatgcacgatgcacgcgttctgtttccattgtgcca 197
Query: 172 cctgcatactacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
||||||||||| || || || || ||||| || || || |||||||||||||||||||
Sbjct: 198 cctgcatactatgctcatcttgctgcatttcgagctcgtttctacatggaaccagaga 255
>gb|CV276089.1|CV276089 WS0178.B21.1_J13 PTxD-NR-A-8 Populus trichocarpa x Populus
deltoides cDNA clone WS0178_J13 3', mRNA sequence
Length = 618
Score = 61.9 bits (31), Expect = 3e-008
Identities = 139/175 (79%)
Strand = Plus / Minus
Query: 55 gctcactaccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactg 114
||||| |||||||| || |||||||||||||| || || || || | |||| | |||
Sbjct: 605 gctcattaccatgtactttgggatgagaacaagtttactgctgatgggctgcagtccctg 546
Query: 115 acaaacaacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcct 174
|| ||||| ||||||||||| ||||| || ||||| || || ||||| |||| || |||
Sbjct: 545 acgaacaatctttgctacacatatgcacgatgcacgcgatctgtttccattgtgccacct 486
Query: 175 gcatactacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
|||||||| || || || || ||||| || || || ||||||||||| |||||||
Sbjct: 485 gcatactatgctcatcttgctgcatttcgagctcgtttctacatggagccagaga 431
>gb|BU880106.1|BU880106 UM41TE06 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 610
Score = 60.0 bits (30), Expect = 1e-007
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 19 tgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggat 78
|||||||||||||| || ||||| ||||| | || ||||| |||||||| || ||||||
Sbjct: 420 tgtagtcatgctgggattcagggtacaagccgtccagctcattaccatgtactttgggat 479
Query: 79 gagaacaatttcac 92
|||||||| |||||
Sbjct: 480 gagaacaagttcac 493
>gb|CV228921.1|CV228921 WS01911.B21_K08 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01911_K08 3', mRNA sequence
Length = 563
Score = 60.0 bits (30), Expect = 1e-007
Identities = 96/118 (81%)
Strand = Plus / Minus
Query: 112 ctgacaaacaacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccct 171
||||| ||||| ||||||||||| ||||| || ||||| || || ||||| |||| ||
Sbjct: 542 ctgacgaacaatctttgctacacatatgcacgatgcacgcgatctgtttccattgtgcca 483
Query: 172 cctgcatactacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
||||||||||| || || || || ||||| || || || ||||||||||| |||||||
Sbjct: 482 cctgcatactatgctcatcttgctgcatttcgagctcgtttctacatggagccagaga 425
>gb|BU890263.1|BU890263 P034B07 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 548
Score = 56.0 bits (28), Expect = 2e-006
Identities = 91/112 (81%)
Strand = Plus / Plus
Query: 118 aacaacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgca 177
||||| || |||||||| ||||| || ||||| || || ||||| |||| || ||||||
Sbjct: 30 aacaatctgtgctacacatatgcacgatgcacgcgttctgtttccattgtgccacctgca 89
Query: 178 tactacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
||||| || || || || ||||| || || || |||||||||||||||||||
Sbjct: 90 tactatgctcatcttgctgcatttcgagctcgtttctacatggaaccagaga 141
>gb|CK117051.1|CK117051 B024P66 Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B024P66 5', mRNA sequence
Length = 276
Score = 56.0 bits (28), Expect = 2e-006
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
|||||||| ||||| | |||||||||||||| || ||||| ||||| | || |||||
Sbjct: 153 gagtttgacttctatttgtgtagtcatgctgggattcagggtacaagccgtccagctcat 212
Query: 61 taccatgtcctctgggatgagaacaatttcac 92
|||||||| || ||||| |||||||| |||||
Sbjct: 213 taccatgtactttgggacgagaacaagttcac 244
>gb|BU818866.1|BU818866 UA35CPF05 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 503
Score = 48.1 bits (24), Expect = 4e-004
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||||||||||||||| ||||| |||||||| |||||||| || ||||| | |||
Sbjct: 137 gagtttgatttctaccttaacagtcacgctggaattcagggaactagcaggcctacacac 196
Query: 61 taccatgt 68
||||||||
Sbjct: 197 taccatgt 204
>gb|DV464201.1|DV464201 MTUNUL1.P24.D07 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 867
Score = 48.1 bits (24), Expect = 4e-004
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 19 tgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggat 78
|||||||| ||||| || ||||| ||||| | || ||||| |||||||| || ||||||
Sbjct: 772 tgtagtcacgctgggattcagggcacaagccgtccagctcattaccatgtactttgggat 831
Query: 79 gagaacaa 86
||||||||
Sbjct: 832 gagaacaa 839
>gb|BU894661.1|BU894661 X012H09 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 814
Score = 46.1 bits (23), Expect = 0.002
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 19 tgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggat 78
||||||||||| || || ||||| ||||| | || ||||| |||||||| || ||||||
Sbjct: 686 tgtagtcatgccgggattcagggcacaagccgtccggctcattaccatgtactttgggat 745
Query: 79 gagaaca 85
|||||||
Sbjct: 746 gagaaca 752
>gb|CK088784.1|CK088784 A072P19.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A072P19 3', mRNA sequence
Length = 323
Score = 42.1 bits (21), Expect = 0.025
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 280 gtgaagcccctgcctgctgtgaaggagaaggtgaaaagggtgatgttctactg 332
|||| |||||||||||| |||||||||| || || |||| |||||||||||
Sbjct: 264 gtgaggcccctgcctgccttgaaggagaatgtcaagcgggttatgttctactg 212
>gb|CN524305.1|CN524305 GQ015M13.T3_E09 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M13_E09 5', mRNA sequence
Length = 849
Score = 40.1 bits (20), Expect = 0.100
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||||||||||||||| ||||| |||||||| |||||||| || || || | |||
Sbjct: 324 gagtttgatttctaccttaacagtcacgctggaattcagggaactagcagacctacacac 383
Query: 61 taccatgt 68
||||||||
Sbjct: 384 taccatgt 391
>gb|AJ777572.1|AJ777572 AJ777572 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400030C07F1, mRNA sequence
Length = 687
Score = 40.1 bits (20), Expect = 0.100
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 61 taccatgtcctctgggatgagaac 84
||||||||||| ||||||||||||
Sbjct: 584 taccatgtcctgtgggatgagaac 607
>gb|BP935857.1|BP935857 BP935857 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-082_C22.r 3', mRNA sequence
Length = 712
Score = 40.1 bits (20), Expect = 0.100
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 110 cactgacaaacaacctttgc 129
||||||||||||||||||||
Sbjct: 453 cactgacaaacaacctttgc 434
>gb|BP936199.1|BP936199 BP936199 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-087_H21.r 3', mRNA sequence
Length = 577
Score = 40.1 bits (20), Expect = 0.100
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 110 cactgacaaacaacctttgc 129
||||||||||||||||||||
Sbjct: 502 cactgacaaacaacctttgc 483
>gb|DN488212.1|DN488212 R041G07.3pR Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone R041G07 3', mRNA sequence
Length = 811
Score = 40.1 bits (20), Expect = 0.100
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaac 44
|||||||| |||||||| |||||||||||||| ||||||||
Sbjct: 596 gagtttgacttctaccttaacagtcatgctggaattcagggaac 553
>gb|DN490157.1|DN490157 UB48DPE03.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB48DPE03 3', mRNA sequence
Length = 544
Score = 40.1 bits (20), Expect = 0.100
Identities = 101/128 (78%)
Strand = Plus / Minus
Query: 55 gctcactaccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactg 114
||||| |||||||| || |||||||||||||| || || || || | |||| | |||
Sbjct: 535 gctcattaccatgtactttgggatgagaacaagtttactgctgatgggttgcagtccctg 476
Query: 115 acaaacaacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcct 174
|||||||| || || ||||| ||||| || ||||| || || ||||| |||| || |||
Sbjct: 475 acaaacaatctgtgatacacatatgcacgatgcacgcgttctgtttccattgtgccacct 416
Query: 175 gcatacta 182
||||||||
Sbjct: 415 gcatacta 408
>gb|DT480982.1|DT480982 WS02530.BR_I12 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02530_I12 5', mRNA sequence
Length = 733
Score = 40.1 bits (20), Expect = 0.100
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 61 taccatgtcctctgggatgagaac 84
||||||||||| ||||||||||||
Sbjct: 129 taccatgtcctgtgggatgagaac 152
>gb|DT486279.1|DT486279 WS02530.B21_I12 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02530_I12 3', mRNA sequence
Length = 733
Score = 40.1 bits (20), Expect = 0.100
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 61 taccatgtcctctgggatgagaac 84
||||||||||| ||||||||||||
Sbjct: 605 taccatgtcctgtgggatgagaac 582
>gb|CX174090.1|CX174090 A12_69-28_02.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 691
Score = 38.2 bits (19), Expect = 0.39
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 37 cagggaacaagtaggcccgctcactaccatgtcctctgggatgagaa 83
|||||||||||||| || || ||||| ||||| | |||||||||||
Sbjct: 603 cagggaacaagtagaccagcacactatcatgttttgtgggatgagaa 649
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 70,216
Number of Sequences: 369679
Number of extensions: 70216
Number of successful extensions: 17798
Number of sequences better than 0.5: 46
Number of HSP's better than 0.5 without gapping: 45
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17697
Number of HSP's gapped (non-prelim): 100
length of query: 635
length of database: 203,408,664
effective HSP length: 19
effective length of query: 616
effective length of database: 196,384,763
effective search space: 120973014008
effective search space used: 120973014008
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)