BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3012915.2.2
         (621 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CX179285.1|CX179285  H08_45-77_16.ab1 leaf inoculated wit...    40   0.098
gb|CX179459.1|CX179459  F02_45-84_12.ab1 leaf inoculated wit...    40   0.098
gb|CX184126.1|CX184126  A10_45-55_02.ab1 leaf inoculated wit...    38   0.39 
gb|DT508131.1|DT508131  WS02420.BR_C10 PTxD-ICC-N-A-14 Popul...    38   0.39 

>gb|CX179285.1|CX179285 H08_45-77_16.ab1 leaf inoculated with Marssonia pathogen of
          Populus euramericana Populus x canadensis cDNA, mRNA
          sequence
          Length = 509

 Score = 40.1 bits (20), Expect = 0.098
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 7  gaattcggcaccaggctcca 26
          ||||||||||||||||||||
Sbjct: 14 gaattcggcaccaggctcca 33



>gb|CX179459.1|CX179459 F02_45-84_12.ab1 leaf inoculated with Marssonia pathogen of
          Populus euramericana Populus x canadensis cDNA, mRNA
          sequence
          Length = 648

 Score = 40.1 bits (20), Expect = 0.098
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 7  gaattcggcaccaggctcca 26
          ||||||||||||||||||||
Sbjct: 13 gaattcggcaccaggctcca 32



>gb|CX184126.1|CX184126 A10_45-55_02.ab1 leaf inoculated with Marssonia pathogen of
          Populus euramericana Populus x canadensis cDNA, mRNA
          sequence
          Length = 671

 Score = 38.2 bits (19), Expect = 0.39
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 7  gaattcggcaccaggctccaagc 29
          ||||||||||| |||||||||||
Sbjct: 14 gaattcggcacgaggctccaagc 36



>gb|DT508131.1|DT508131 WS02420.BR_C10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
          deltoides cDNA clone WS02420_C10 5', mRNA sequence
          Length = 822

 Score = 38.2 bits (19), Expect = 0.39
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 7  gaattcggcaccaggctcc 25
          |||||||||||||||||||
Sbjct: 5  gaattcggcaccaggctcc 23



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 50,059
Number of Sequences: 369679
Number of extensions: 50059
Number of successful extensions: 16666
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16662
Number of HSP's gapped (non-prelim): 4
length of query: 621
length of database: 203,408,664
effective HSP length: 19
effective length of query: 602
effective length of database: 196,384,763
effective search space: 118223627326
effective search space used: 118223627326
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)