BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3012883.2.1
(1189 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU874173.1|BU874173 Q065B02 Populus flower cDNA library ... 64 1e-008
gb|CK102202.1|CK102202 G069P05.5pR Populus tension wood cDN... 64 1e-008
gb|BU868155.1|BU868155 M112A11 Populus flower cDNA library ... 56 3e-006
gb|CF234274.1|CF234274 PtaJXO4E7E0709 Poplar cDNA library f... 56 3e-006
gb|CN520599.1|CN520599 GQ0106.B3_F22 GQ010 Populus trichoca... 56 3e-006
gb|CV245165.1|CV245165 WS0256.B21_K13 PT-MB-N-A-15 Populus ... 56 3e-006
gb|DT477678.1|DT477678 WS02520.BR_K13 PT-MB-N-A-15 Populus ... 56 3e-006
gb|DT482741.1|DT482741 WS02520.B21_K13 PT-MB-N-A-15 Populus... 56 3e-006
gb|DT488050.1|DT488050 WS02535.B21_F24 PT-MB-N-A-15 Populus... 56 3e-006
gb|BU891968.1|BU891968 P057F09 Populus petioles cDNA librar... 54 1e-005
gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and... 54 1e-005
gb|CV261342.1|CV261342 WS02016.B21_I08 PTxN-IB-N-A-11 Popul... 54 1e-005
gb|CV278214.1|CV278214 WS0145.B21_M14 PTxD-IL-A-5 Populus t... 54 1e-005
>gb|BU874173.1|BU874173 Q065B02 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 652
Score = 63.9 bits (32), Expect = 1e-008
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 320 ccatgaaagcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctc 379
||||||||| ||| || ||||| |||||||||||| |||||||||| || ||||||||||
Sbjct: 519 ccatgaaaggaatcaaacagcgaatggagaaagatgttgatgaagttggaaaaattgctc 578
>gb|CK102202.1|CK102202 G069P05.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G069P05 5', mRNA sequence
Length = 597
Score = 63.9 bits (32), Expect = 1e-008
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 320 ccatgaaagcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctc 379
||||||||| ||| || ||||| |||||||| ||| |||||||||| |||||||||||||
Sbjct: 532 ccatgaaaggaatcaaacagcgaatggagaacgatgttgatgaagttgggaaaattgctc 591
>gb|BU868155.1|BU868155 M112A11 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 534
Score = 56.0 bits (28), Expect = 3e-006
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 320 ccatgaaagcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctc 379
||||||||| ||| || ||||| |||||||||||| | |||||||| || ||||||||||
Sbjct: 376 ccatgaaaggaatcaaacagcgaatggagaaagatgtcgatgaagttggaaaaattgctc 435
>gb|CF234274.1|CF234274 PtaJXO4E7E0709 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 752
Score = 56.0 bits (28), Expect = 3e-006
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 320 ccatgaaagcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctc 379
||||||||| ||| || ||||| |||||||||||| |||||||||| || ||||| ||||
Sbjct: 74 ccatgaaaggaatcaaacagcgaatggagaaagatgttgatgaagttggaaaaatcgctc 133
Score = 54.0 bits (27), Expect = 1e-005
Identities = 75/91 (82%)
Strand = Plus / Plus
Query: 692 gaggccagatactagacactgttgctgaaatacaggagcgacatgatgctgtaagggatc 751
||||||||||| ||| ||| | || ||||| || ||||| |||||||| || || ||||
Sbjct: 446 gaggccagataacagatactttggcagaaattcaagagcgccatgatgcagtcagagatc 505
Query: 752 tagagaggaagcttctggagttgcaacagat 782
| |||||||| |||||||| || ||||||||
Sbjct: 506 tggagaggaaacttctggacttacaacagat 536
>gb|CN520599.1|CN520599 GQ0106.B3_F22 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0106_F22 5', mRNA sequence
Length = 778
Score = 56.0 bits (28), Expect = 3e-006
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 320 ccatgaaagcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctc 379
||||||||| ||| || ||||| |||||||||||| | |||||||| || ||||||||||
Sbjct: 421 ccatgaaaggaatcaaacagcgaatggagaaagatgtcgatgaagttggaaaaattgctc 480
>gb|CV245165.1|CV245165 WS0256.B21_K13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0256_K13 3', mRNA sequence
Length = 887
Score = 56.0 bits (28), Expect = 3e-006
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 320 ccatgaaagcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctc 379
||||||||| ||| || ||||| |||||||||||| | |||||||| || ||||||||||
Sbjct: 429 ccatgaaaggaatcaaacagcgaatggagaaagatgtcgatgaagttggaaaaattgctc 488
Score = 46.1 bits (23), Expect = 0.003
Identities = 65/79 (82%)
Strand = Plus / Plus
Query: 692 gaggccagatactagacactgttgctgaaatacaggagcgacatgatgctgtaagggatc 751
||||||||||| ||| ||| | || ||||| || ||||| |||||||| || || ||||
Sbjct: 801 gaggccagataacagatactttggcagaaattcaagagcgccatgatgcagtcagagatc 860
Query: 752 tagagaggaagcttctgga 770
| |||||||| ||||||||
Sbjct: 861 tggagaggaaacttctgga 879
>gb|DT477678.1|DT477678 WS02520.BR_K13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_K13 5', mRNA sequence
Length = 344
Score = 56.0 bits (28), Expect = 3e-006
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 320 ccatgaaagcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctc 379
||||||||| ||| || ||||| |||||||||||| | |||||||| || ||||||||||
Sbjct: 268 ccatgaaaggaatcaaacagcgaatggagaaagatgtcgatgaagttggaaaaattgctc 327
>gb|DT482741.1|DT482741 WS02520.B21_K13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_K13 3', mRNA sequence
Length = 344
Score = 56.0 bits (28), Expect = 3e-006
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 320 ccatgaaagcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctc 379
||||||||| ||| || ||||| |||||||||||| | |||||||| || ||||||||||
Sbjct: 77 ccatgaaaggaatcaaacagcgaatggagaaagatgtcgatgaagttggaaaaattgctc 18
>gb|DT488050.1|DT488050 WS02535.B21_F24 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02535_F24 3', mRNA sequence
Length = 357
Score = 56.0 bits (28), Expect = 3e-006
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 320 ccatgaaagcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctc 379
||||||||| ||| || ||||| |||||||||||| | |||||||| || ||||||||||
Sbjct: 77 ccatgaaaggaatcaaacagcgaatggagaaagatgtcgatgaagttggaaaaattgctc 18
>gb|BU891968.1|BU891968 P057F09 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 610
Score = 54.0 bits (27), Expect = 1e-005
Identities = 75/91 (82%)
Strand = Plus / Plus
Query: 692 gaggccagatactagacactgttgctgaaatacaggagcgacatgatgctgtaagggatc 751
||||||||||| ||| ||| | || ||||| || ||||| |||||||| || || ||||
Sbjct: 117 gaggccagataacagatactttggcagaaattcaagagcgccatgatgcagtcagagatc 176
Query: 752 tagagaggaagcttctggagttgcaacagat 782
| |||||||| |||||||| || ||||||||
Sbjct: 177 tggagaggaaacttctggacttacaacagat 207
>gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and shoot Populus euphratica cDNA
clone 46, mRNA sequence
Length = 574
Score = 54.0 bits (27), Expect = 1e-005
Identities = 75/91 (82%)
Strand = Plus / Minus
Query: 692 gaggccagatactagacactgttgctgaaatacaggagcgacatgatgctgtaagggatc 751
||||||||||| ||| ||| | || ||||| || ||||| |||||||| || || |||
Sbjct: 351 gaggccagataacagatactttggcagaaattcaagagcgccatgatgcagtcagagatt 292
Query: 752 tagagaggaagcttctggagttgcaacagat 782
| |||||||| |||||||| |||||||||||
Sbjct: 291 tggagaggaaacttctggacttgcaacagat 261
>gb|CV261342.1|CV261342 WS02016.B21_I08 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02016_I08 3', mRNA sequence
Length = 933
Score = 54.0 bits (27), Expect = 1e-005
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 321 catgaaagcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctc 379
|||||||| ||| || ||||| |||||||||||| | |||||||| || ||||||||||
Sbjct: 933 catgaaaggaatcaaacagcgaatggagaaagatgtcgatgaagttggaaaaattgctc 875
Score = 54.0 bits (27), Expect = 1e-005
Identities = 75/91 (82%)
Strand = Plus / Minus
Query: 692 gaggccagatactagacactgttgctgaaatacaggagcgacatgatgctgtaagggatc 751
||||||||||| ||| ||| | || ||||| || ||||| |||||||| || || ||||
Sbjct: 562 gaggccagataacagatactttggcagaaattcaagagcgccatgatgcagtcagagatc 503
Query: 752 tagagaggaagcttctggagttgcaacagat 782
| |||||||| |||||||| || ||||||||
Sbjct: 502 tggagaggaaacttctggacttacaacagat 472
>gb|CV278214.1|CV278214 WS0145.B21_M14 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0145_M14 3', mRNA sequence
Length = 524
Score = 54.0 bits (27), Expect = 1e-005
Identities = 75/91 (82%)
Strand = Plus / Minus
Query: 692 gaggccagatactagacactgttgctgaaatacaggagcgacatgatgctgtaagggatc 751
||||||||||| ||| ||| | || ||||| || ||||| |||||||| || || ||||
Sbjct: 442 gaggccagataacagatactttggcagaaattcaagagcgccatgatgcagtcagagatc 383
Query: 752 tagagaggaagcttctggagttgcaacagat 782
| |||||||| |||||||| || ||||||||
Sbjct: 382 tggagaggaaacttctggacttacaacagat 352
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 147,279
Number of Sequences: 369679
Number of extensions: 147279
Number of successful extensions: 41306
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41276
Number of HSP's gapped (non-prelim): 30
length of query: 1189
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1170
effective length of database: 196,384,763
effective search space: 229770172710
effective search space used: 229770172710
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)