BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950160.2.1
(846 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX654676.1|CX654676 PO02058A06 Poplar SC cDNA library Po... 42 0.034
gb|CX657189.1|CX657189 PO02032F06 Poplar SC cDNA library Po... 42 0.034
gb|BU865685.1|BU865685 S057B01 Populus imbibed seed cDNA li... 40 0.13
gb|CK110338.1|CK110338 N055G11 Populus bark cDNA library Po... 40 0.13
gb|CV242604.1|CV242604 WS02515.B21_I09 PT-MB-N-A-15 Populus... 40 0.13
>gb|CX654676.1|CX654676 PO02058A06 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02058A06 5', mRNA sequence
Length = 591
Score = 42.1 bits (21), Expect = 0.034
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 561 cttctccattccaattttgag 581
|||||||||||||||||||||
Sbjct: 463 cttctccattccaattttgag 483
>gb|CX657189.1|CX657189 PO02032F06 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02032F06 5', mRNA sequence
Length = 601
Score = 42.1 bits (21), Expect = 0.034
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 561 cttctccattccaattttgag 581
|||||||||||||||||||||
Sbjct: 463 cttctccattccaattttgag 483
>gb|BU865685.1|BU865685 S057B01 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 227
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 562 ttctccattccaattttgag 581
||||||||||||||||||||
Sbjct: 122 ttctccattccaattttgag 141
>gb|CK110338.1|CK110338 N055G11 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N055G11 5', mRNA sequence
Length = 892
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 562 ttctccattccaattttgag 581
||||||||||||||||||||
Sbjct: 701 ttctccattccaattttgag 720
>gb|CV242604.1|CV242604 WS02515.B21_I09 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02515_I09 3', mRNA sequence
Length = 904
Score = 40.1 bits (20), Expect = 0.13
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 801 ttcctccattcaaccagatcaagcacgttcataccaaatgccca 844
||||||||| ||| || ||||| |||||||| |||||||||||
Sbjct: 687 ttcctccatgcaatcaaatcaaaaacgttcattccaaatgccca 730
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 110,252
Number of Sequences: 369679
Number of extensions: 110252
Number of successful extensions: 29710
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29705
Number of HSP's gapped (non-prelim): 5
length of query: 846
length of database: 203,408,664
effective HSP length: 19
effective length of query: 827
effective length of database: 196,384,763
effective search space: 162410199001
effective search space used: 162410199001
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)