BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950089.2.3
(824 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI164945.1|AI164945 A071P32U Hybrid aspen plasmid librar... 50 1e-004
gb|BU871910.1|BU871910 Q036A01 Populus flower cDNA library ... 50 1e-004
gb|BU873882.1|BU873882 Q061A01 Populus flower cDNA library ... 50 1e-004
gb|CK099512.1|CK099512 A071P32.5pR Hybrid aspen plasmid lib... 50 1e-004
gb|CV246557.1|CV246557 WS01111.B21_B06 PT-P-FL-A-2 Populus ... 50 1e-004
gb|DT499923.1|DT499923 WS9991.BR_L17 PT-P-FL-A-2 Populus tr... 50 1e-004
gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and... 40 0.13
gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Librar... 40 0.13
gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Libr... 40 0.13
>gb|AI164945.1|AI164945 A071P32U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 342
Score = 50.1 bits (25), Expect = 1e-004
Identities = 67/81 (82%)
Strand = Plus / Minus
Query: 424 ccagtaagtgagccactgctgatcatctacaggattttttgtctctatagctctaacaga 483
||||||||| ||||| |||| |||||| ||| || ||||||||| || || |||| ||
Sbjct: 226 ccagtaagtaagccattgcttatcatccacatgagattttgtctcgattgccctaattga 167
Query: 484 agcatatagaggataagcaag 504
||||||||||||||| ||||
Sbjct: 166 ggcatatagaggataaacaag 146
>gb|BU871910.1|BU871910 Q036A01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 407
Score = 50.1 bits (25), Expect = 1e-004
Identities = 67/81 (82%)
Strand = Plus / Minus
Query: 424 ccagtaagtgagccactgctgatcatctacaggattttttgtctctatagctctaacaga 483
||||||||| ||||| |||| |||||| ||| || ||||||||| || || |||| ||
Sbjct: 218 ccagtaagtaagccattgcttatcatcaacatgagattttgtctcgattgccctaattga 159
Query: 484 agcatatagaggataagcaag 504
||||||||||||||| ||||
Sbjct: 158 ggcatatagaggataaacaag 138
>gb|BU873882.1|BU873882 Q061A01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 555
Score = 50.1 bits (25), Expect = 1e-004
Identities = 67/81 (82%)
Strand = Plus / Minus
Query: 424 ccagtaagtgagccactgctgatcatctacaggattttttgtctctatagctctaacaga 483
||||||||| ||||| |||| |||||| ||| || ||||||||| || || |||| ||
Sbjct: 222 ccagtaagtaagccattgcttatcatcaacatgagattttgtctcgattgccctaattga 163
Query: 484 agcatatagaggataagcaag 504
||||||||||||||| ||||
Sbjct: 162 ggcatatagaggataaacaag 142
>gb|CK099512.1|CK099512 A071P32.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A071P32 5', mRNA sequence
Length = 384
Score = 50.1 bits (25), Expect = 1e-004
Identities = 67/81 (82%)
Strand = Plus / Minus
Query: 424 ccagtaagtgagccactgctgatcatctacaggattttttgtctctatagctctaacaga 483
||||||||| ||||| |||| |||||| ||| || ||||||||| || || |||| ||
Sbjct: 269 ccagtaagtaagccattgcttatcatccacatgagattttgtctcgattgccctaattga 210
Query: 484 agcatatagaggataagcaag 504
||||||||||||||| ||||
Sbjct: 209 ggcatatagaggataaacaag 189
>gb|CV246557.1|CV246557 WS01111.B21_B06 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01111_B06 3', mRNA sequence
Length = 767
Score = 50.1 bits (25), Expect = 1e-004
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 424 ccagtaagtgagccactgctgatcatctacaggattttttgtctctatagctctaacaga 483
||||||||| ||||| |||| |||||| ||| || ||||||||| || || |||| ||
Sbjct: 594 ccagtaagtaagccattgcttatcatcaacatgagattttgtctcgattgccctaattga 653
Query: 484 agcatatagaggataagcaag 504
||||||||||||||| ||||
Sbjct: 654 ggcatatagaggataaacaag 674
>gb|DT499923.1|DT499923 WS9991.BR_L17 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01111_B06 5', mRNA sequence
Length = 483
Score = 50.1 bits (25), Expect = 1e-004
Identities = 67/81 (82%)
Strand = Plus / Minus
Query: 424 ccagtaagtgagccactgctgatcatctacaggattttttgtctctatagctctaacaga 483
||||||||| ||||| |||| |||||| ||| || ||||||||| || || |||| ||
Sbjct: 314 ccagtaagtaagccattgcttatcatcaacatgagattttgtctcgattgccctaattga 255
Query: 484 agcatatagaggataagcaag 504
||||||||||||||| ||||
Sbjct: 254 ggcatatagaggataaacaag 234
>gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and shoot Populus euphratica cDNA
clone 46, mRNA sequence
Length = 574
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 805 gtacctgcccgggcggccgc 824
||||||||||||||||||||
Sbjct: 479 gtacctgcccgggcggccgc 498
>gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 606
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 805 gtacctgcccgggcggccgc 824
||||||||||||||||||||
Sbjct: 289 gtacctgcccgggcggccgc 270
>gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 786
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 805 gtacctgcccgggcggccgc 824
||||||||||||||||||||
Sbjct: 656 gtacctgcccgggcggccgc 637
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 805 gtacctgcccgggcggccgc 824
||||||||||||||||||||
Sbjct: 625 gtacctgcccgggcggccgc 644
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 57,399
Number of Sequences: 369679
Number of extensions: 57399
Number of successful extensions: 15346
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15335
Number of HSP's gapped (non-prelim): 11
length of query: 824
length of database: 203,408,664
effective HSP length: 19
effective length of query: 805
effective length of database: 196,384,763
effective search space: 158089734215
effective search space used: 158089734215
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)