BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2943843.2.1
(2639 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ775112.1|AJ775112 AJ775112 Populus euphratica shoot 3-... 113 4e-023
gb|CV259845.1|CV259845 WS02012.B21_G23 PTxN-IB-N-A-11 Popul... 98 2e-018
gb|DT492083.1|DT492083 WS02549.C21_J22 PT-MB-N-A-15 Populus... 98 2e-018
gb|DV465119.1|DV465119 MTUNUL1.P35.C05 NUL Populus fremonti... 98 2e-018
gb|BU811408.1|BU811408 UL83TH09 Populus leaf cDNA library P... 90 5e-016
gb|CA927141.1|CA927141 MTU6CR.P5.E03 Aspen root cDNA Librar... 90 5e-016
gb|CA927157.1|CA927157 MTU6CR.P5.F10 Aspen root cDNA Librar... 90 5e-016
gb|CF235698.1|CF235698 PtaJXT0026A2A0202 Poplar cDNA librar... 90 5e-016
gb|CV225643.1|CV225643 WS0161.B21_P21 PT-DX-A-7 Populus tri... 90 5e-016
gb|CV233185.1|CV233185 WS0199.B21_O11 PT-DX-N-A-10 Populus ... 90 5e-016
gb|CV257011.1|CV257011 WS0245.B21_G15 PTxD-ICC-N-A-14 Popul... 90 5e-016
gb|BP932164.1|BP932164 BP932164 full-length enriched poplar... 90 5e-016
gb|DT513855.1|DT513855 WS02423.B21_D03 PTxD-ICC-N-A-14 Popu... 90 5e-016
gb|DT514199.1|DT514199 WS02424.B21_C11 PTxD-ICC-N-A-14 Popu... 90 5e-016
gb|CA926957.1|CA926957 MTU6CR.P3.C03 Aspen root cDNA Librar... 82 1e-013
gb|CK089329.1|CK089329 C001P32.3pR Populus strain T89 leave... 82 1e-013
gb|CK093763.1|CK093763 G133P18.3pR Populus tension wood cDN... 82 1e-013
gb|CK100111.1|CK100111 C001P32.5pR Populus strain T89 leave... 82 1e-013
gb|DT469497.1|DT469497 WS01917.C21_P11 PT-DX-N-A-10 Populus... 82 1e-013
gb|CV225788.1|CV225788 WS0162.B21_G10 PT-DX-A-7 Populus tri... 80 5e-013
gb|BI127561.1|BI127561 G062P34Y Populus cambium cDNA librar... 76 8e-012
gb|CK102055.1|CK102055 G062P34.5pR Populus tension wood cDN... 76 8e-012
gb|DT509241.1|DT509241 WS02423.BR_D03 PTxD-ICC-N-A-14 Popul... 76 8e-012
gb|DT509589.1|DT509589 WS02424.BR_C11 PTxD-ICC-N-A-14 Popul... 76 8e-012
gb|BI069432.1|BI069432 C001P32U Populus strain T89 leaves P... 74 3e-011
gb|CA926277.1|CA926277 MTU6CR.P13.B04 Aspen root cDNA Libra... 74 3e-011
gb|BU877957.1|BU877957 V041D05 Populus flower cDNA library ... 68 2e-009
gb|BU878902.1|BU878902 V053C05 Populus flower cDNA library ... 68 2e-009
gb|CN523657.1|CN523657 GQ015M11.T3_E11 GQ015 Populus tricho... 64 3e-008
gb|CF231108.1|CF231108 PtaC0017D7D0707 Poplar cDNA library ... 60 5e-007
gb|BP930049.1|BP930049 BP930049 full-length enriched poplar... 60 5e-007
gb|CK103725.1|CK103725 G129P57.5pR Populus tension wood cDN... 58 2e-006
gb|CV130606.1|CV130606 B9SP06g08 Populus stem seasonal libr... 58 2e-006
gb|CV270754.1|CV270754 WS0152.B21_N12 PTxN-IB-A-6 Populus t... 58 2e-006
gb|BU836241.1|BU836241 T084C08 Populus apical shoot cDNA li... 56 7e-006
gb|AJ778077.1|AJ778077 AJ778077 Populus euphratica root 3-6... 56 7e-006
gb|CV225706.1|CV225706 WS0162.B21_C19 PT-DX-A-7 Populus tri... 56 7e-006
gb|DN489836.1|DN489836 T084C08.3pR Populus shoot meristem c... 56 7e-006
gb|DN499759.1|DN499759 T084C08.5pR Populus shoot meristem c... 56 7e-006
gb|DT522154.1|DT522154 WS02036.B21_D10 PTxN-IB-N-A-11 Popul... 56 7e-006
gb|CK116914.1|CK116914 B019P69 Hybrid aspen plasmid library... 50 4e-004
gb|AJ769971.1|AJ769971 AJ769971 Populus euphratica leaf 3-6... 50 4e-004
gb|BU835556.1|BU835556 T075D10 Populus apical shoot cDNA li... 48 0.002
gb|CX660262.1|CX660262 PO01020A03 Poplar SC cDNA library Po... 48 0.002
gb|DN489744.1|DN489744 T075D10.3pR Populus shoot meristem c... 48 0.002
gb|DN499659.1|DN499659 T075D10.5pR Populus shoot meristem c... 48 0.002
gb|DT476879.1|DT476879 WS01231.B21_C22 PT-GT-FL-A-3 Populus... 48 0.002
gb|DT478641.1|DT478641 WS02523.BR_F24 PT-MB-N-A-15 Populus ... 48 0.002
gb|DT519836.1|DT519836 WS02443.B21_N01 PTxD-ICC-N-A-14 Popu... 48 0.002
gb|CN517876.1|CN517876 GQ0093.B3_B22 GQ009 Populus trichoca... 46 0.007
gb|CV245531.1|CV245531 WS0257.B21_K22 PT-MB-N-A-15 Populus ... 46 0.007
gb|BI068881.1|BI068881 C028P55U Populus strain T89 leaves P... 44 0.027
gb|BU818975.1|BU818975 UA37BPG11 Populus tremula cambium cD... 44 0.027
gb|BU824331.1|BU824331 UB63CPB08 Populus tremula cambium cD... 44 0.027
gb|BU895275.1|BU895275 X021F12 Populus wood cDNA library Po... 44 0.027
gb|BU898126.1|BU898126 X075B09 Populus wood cDNA library Po... 44 0.027
gb|CF229973.1|CF229973 PtaC0002B9B0903 Poplar cDNA library ... 44 0.027
gb|CK095944.1|CK095944 UA37BPG11.3pR Populus dormant cambiu... 44 0.027
gb|CK097195.1|CK097195 UB43DPB01.3pR Populus active cambium... 44 0.027
gb|CK105764.1|CK105764 UA37BPG11.5pR Populus dormant cambiu... 44 0.027
gb|CK107600.1|CK107600 UB63CPB08.5pR Populus active cambium... 44 0.027
gb|CN519425.1|CN519425 GQ0103.B3_E10 GQ010 Populus trichoca... 44 0.027
gb|CV230329.1|CV230329 WS01916.B21_C15 PT-DX-N-A-10 Populus... 44 0.027
gb|CV241540.1|CV241540 WS02512.B21_I02 PT-MB-N-A-15 Populus... 44 0.027
gb|CV255278.1|CV255278 WS02412.B21_J04 PTxD-ICC-N-A-14 Popu... 44 0.027
gb|CV260392.1|CV260392 WS02013.B21_P07 PTxN-IB-N-A-11 Popul... 44 0.027
gb|CV266220.1|CV266220 WS02029.B21_G20 PTxN-IB-N-A-11 Popul... 44 0.027
gb|CV267211.1|CV267211 WS02031.B21_C04 PTxN-IB-N-A-11 Popul... 44 0.027
gb|CV270177.1|CV270177 WS0151.B21_E21 PTxN-IB-A-6 Populus t... 44 0.027
gb|CV272290.1|CV272290 WS0157.B21_D11 PTxN-IB-A-6 Populus t... 44 0.027
gb|CX180571.1|CX180571 A04_45-59_02.ab1 leaf inoculated wit... 44 0.027
gb|CX186306.1|CX186306 H08_45-31_16.ab1 leaf inoculated wit... 44 0.027
gb|CX657263.1|CX657263 PO02037F02 Poplar SC cDNA library Po... 44 0.027
gb|BP922215.1|BP922215 BP922215 full-length enriched poplar... 44 0.027
gb|BP922846.1|BP922846 BP922846 full-length enriched poplar... 44 0.027
gb|BP924472.1|BP924472 BP924472 full-length enriched poplar... 44 0.027
gb|BP925879.1|BP925879 BP925879 full-length enriched poplar... 44 0.027
gb|BP934179.1|BP934179 BP934179 full-length enriched poplar... 44 0.027
gb|BP935485.1|BP935485 BP935485 full-length enriched poplar... 44 0.027
gb|DN492469.1|DN492469 X021F12.3pR Populus wood cDNA librar... 44 0.027
gb|DN502511.1|DN502511 X021F12.5pR Populus wood cDNA librar... 44 0.027
gb|DT470212.1|DT470212 WS01920.C21_D06 PT-DX-N-A-10 Populus... 44 0.027
gb|DT478092.1|DT478092 WS02521.BR_N06 PT-MB-N-A-15 Populus ... 44 0.027
gb|DT519984.1|DT519984 WS02446.B21.1_D20 PTxD-ICC-N-A-14 Po... 44 0.027
gb|DV464650.1|DV464650 MTUNUL1.P3.B09 NUL Populus fremontii... 44 0.027
gb|BU894038.1|BU894038 X001C12 Populus wood cDNA library Po... 42 0.11
gb|CF227940.1|CF227940 PtaXM0006F8F0812 Poplar cDNA library... 42 0.11
gb|CK089933.1|CK089933 C047P18.3pR Populus strain T89 leave... 42 0.11
gb|CK096759.1|CK096759 UB25CPE10.3pR Populus active cambium... 42 0.11
gb|CK097090.1|CK097090 UB38BPF06.3pR Populus active cambium... 42 0.11
gb|CK106911.1|CK106911 UB38BPF06.5pR Populus active cambium... 42 0.11
gb|AJ770073.1|AJ770073 AJ770073 Populus euphratica leaf 3-6... 42 0.11
gb|CV243012.1|CV243012 WS02516.B21.1_K13 PT-MB-N-A-15 Popul... 42 0.11
gb|CV263969.1|CV263969 WS02023.B21_E08 PTxN-IB-N-A-11 Popul... 42 0.11
gb|CX173515.1|CX173515 E04_69-54_10.ab1 leaf inoculated wit... 42 0.11
gb|CX179473.1|CX179473 F08_45-96_12.ab1 leaf inoculated wit... 42 0.11
gb|BP926457.1|BP926457 BP926457 full-length enriched poplar... 42 0.11
gb|BP932280.1|BP932280 BP932280 full-length enriched poplar... 42 0.11
gb|DN485828.1|DN485828 N037G07.3pR Populus bark cDNA librar... 42 0.11
gb|DT469974.1|DT469974 WS01919.C21_H22 PT-DX-N-A-10 Populus... 42 0.11
gb|DT493082.1|DT493082 WS02553.C21_F07 PT-MB-N-A-15 Populus... 42 0.11
gb|BU836504.1|BU836504 T087D08 Populus apical shoot cDNA li... 40 0.42
gb|CA923405.1|CA923405 MTU7CL.P10.A11 Aspen leaf cDNA Libra... 40 0.42
gb|CA930975.1|CA930975 MTU2TA.P13.C02 Aspen apex cDNA Libra... 40 0.42
gb|CF235033.1|CF235033 PtaJXT0018A9A0901 Poplar cDNA librar... 40 0.42
gb|CK089661.1|CK089661 C024P75.3pR Populus strain T89 leave... 40 0.42
gb|CK090120.1|CK090120 C066P05.3pR Populus strain T89 leave... 40 0.42
gb|CK115104.1|CK115104 Y003F03 Populus infected leaf substr... 40 0.42
gb|CN524231.1|CN524231 GQ015M12.T3_C09 GQ015 Populus tricho... 40 0.42
gb|AJ779091.1|AJ779091 AJ779091 Populus euphratica cambium ... 40 0.42
gb|CV256009.1|CV256009 WS0242.B21_K16 PTxD-ICC-N-A-14 Popul... 40 0.42
gb|CV257979.1|CV257979 WS0248.B21_D01 PTxD-ICC-N-A-14 Popul... 40 0.42
gb|CV261440.1|CV261440 WS02016.B21_M15 PTxN-IB-N-A-11 Popul... 40 0.42
gb|CV277420.1|CV277420 WS0143.B21_I17 PTxD-IL-A-5 Populus t... 40 0.42
gb|CX174425.1|CX174425 B07_69-53_03.ab1 leaf inoculated wit... 40 0.42
gb|DT516426.1|DT516426 WS02431.B21_F15 PTxD-ICC-N-A-14 Popu... 40 0.42
gb|DT522531.1|DT522531 WS02037.B21_E02 PTxN-IB-N-A-11 Popul... 40 0.42
>gb|AJ775112.1|AJ775112 AJ775112 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300027H12F1, mRNA sequence
Length = 564
Score = 113 bits (57), Expect = 4e-023
Identities = 240/301 (79%)
Strand = Plus / Minus
Query: 431 tcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattggtggcc 490
||||||| || |||||||| | |||||||||||||| ||||| |||||||| || || |
Sbjct: 431 tcatgttagctctctgcactaaacgaaccaatgcttgaaccacttctgacataggaggtc 372
Query: 491 tgaattctggttcaggctggacacacagggcaaggacatcagcaaatcgggatagagatt 550
|| ||||| |||||||||||||| || |||| |||||||||||| ||||| |||||||
Sbjct: 371 gaaactctggctcaggctggacacaaagagcaatgacatcagcaaaccgggagagagatt 312
Query: 551 tagctgggtatagacccttgagtgcaggatcgaccatcctgtccaatgcgtcgatgtcat 610
| | ||||| ||||| |||||| | || || ||||| | || || ||||||||||
Sbjct: 311 tgacagggtagagacctttgagttctgggtcaaccattttagataaagcatcgatgtcat 252
Query: 611 gcagctggggtgttgcccaccgcacaagtgactgttctgacctgggtctagagctgtcaa 670
| ||||| || |||||||| || || | ||| || ||||| || || || ||||||||||
Sbjct: 251 ggagctgaggagttgcccagcgaaccaatgattgctctgatctaggccttgagctgtcaa 192
Query: 671 atggtctacgtcctgtcaatagttcaagcatgacaactccaaagctgtaaacatcactct 730
||||| ||||||| || | || || | |||||| | ||||| ||||||||||||||||
Sbjct: 191 atggtttacgtccagtaagaagctccaacatgactgcaccaaaactgtaaacatcactct 132
Query: 731 t 731
|
Sbjct: 131 t 131
>gb|CV259845.1|CV259845 WS02012.B21_G23 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02012_G23 3', mRNA sequence
Length = 772
Score = 97.6 bits (49), Expect = 2e-018
Identities = 238/301 (79%)
Strand = Plus / Plus
Query: 431 tcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattggtggcc 490
||||||| || |||||||| | |||||||||||||| ||||| |||||||| || || |
Sbjct: 306 tcatgttagctctctgcactaaacgaaccaatgcttgaaccacttctgacataggaggtc 365
Query: 491 tgaattctggttcaggctggacacacagggcaaggacatcagcaaatcgggatagagatt 550
|| ||||| |||||||||||||| || |||| |||||||||||| ||||| |||||||
Sbjct: 366 gaaactctggctcaggctggacacaaagagcaatgacatcagcaaaccgggagagagatt 425
Query: 551 tagctgggtatagacccttgagtgcaggatcgaccatcctgtccaatgcgtcgatgtcat 610
| | ||||| || || |||||| | || || ||||| | || || ||||||||||
Sbjct: 426 tgacagggtagagccctttgagttctgggtcaaccattttagataaagcatcgatgtcat 485
Query: 611 gcagctggggtgttgcccaccgcacaagtgactgttctgacctgggtctagagctgtcaa 670
| ||||| || |||||||| || || | ||| || || || || || || ||||||||||
Sbjct: 486 ggagctgaggagttgcccagcgaaccaatgattgctcagatctaggccttgagctgtcaa 545
Query: 671 atggtctacgtcctgtcaatagttcaagcatgacaactccaaagctgtaaacatcactct 730
||||| ||||||| || | || || | |||||| | ||||| ||||||||||||||||
Sbjct: 546 atggtttacgtccagtaagaagctccaacatgactgcaccaaaactgtaaacatcactct 605
Query: 731 t 731
|
Sbjct: 606 t 606
>gb|DT492083.1|DT492083 WS02549.C21_J22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02549_J22 3', mRNA sequence
Length = 778
Score = 97.6 bits (49), Expect = 2e-018
Identities = 238/301 (79%)
Strand = Plus / Plus
Query: 431 tcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattggtggcc 490
||||||| || |||||||| | |||||||||||||| ||||| |||||||| || || |
Sbjct: 305 tcatgttagctctctgcactaaacgaaccaatgcttgaaccacttctgacataggaggtc 364
Query: 491 tgaattctggttcaggctggacacacagggcaaggacatcagcaaatcgggatagagatt 550
|| ||||| |||||||||||||| || |||| |||||||||||| ||||| |||||||
Sbjct: 365 gaaactctggctcaggctggacacaaagagcaatgacatcagcaaaccgggagagagatt 424
Query: 551 tagctgggtatagacccttgagtgcaggatcgaccatcctgtccaatgcgtcgatgtcat 610
| | ||||| || || |||||| | || || ||||| | || || ||||||||||
Sbjct: 425 tgacagggtagagccctttgagttctgggtcaaccattttagataaagcatcgatgtcat 484
Query: 611 gcagctggggtgttgcccaccgcacaagtgactgttctgacctgggtctagagctgtcaa 670
| ||||| || |||||||| || || | ||| || || || || || || ||||||||||
Sbjct: 485 ggagctgaggagttgcccagcgaaccaatgattgctcagatctaggccttgagctgtcaa 544
Query: 671 atggtctacgtcctgtcaatagttcaagcatgacaactccaaagctgtaaacatcactct 730
||||| ||||||| || | || || | |||||| | ||||| ||||||||||||||||
Sbjct: 545 atggtttacgtccagtaagaagctccaacatgactgcaccaaaactgtaaacatcactct 604
Query: 731 t 731
|
Sbjct: 605 t 605
>gb|DV465119.1|DV465119 MTUNUL1.P35.C05 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 956
Score = 97.6 bits (49), Expect = 2e-018
Identities = 238/301 (79%)
Strand = Plus / Minus
Query: 431 tcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattggtggcc 490
||||||| || |||||||| | |||||||||||||| ||||| |||||||| || || |
Sbjct: 814 tcatgttagctctctgcactaaacgaaccaatgcttgaaccacttctgacataggaggtc 755
Query: 491 tgaattctggttcaggctggacacacagggcaaggacatcagcaaatcgggatagagatt 550
|| ||||| |||||||||||||| || |||| |||||||||||| ||||| |||||||
Sbjct: 754 gaaactctggctcaggctggacacaaagagcaatgacatcagcaaaccgggagagagatt 695
Query: 551 tagctgggtatagacccttgagtgcaggatcgaccatcctgtccaatgcgtcgatgtcat 610
| | ||||| || || |||||| | || || ||||| | || || ||||||||||
Sbjct: 694 tgacagggtagagccctttgagttctgggtcaaccattttagataaagcatcgatgtcat 635
Query: 611 gcagctggggtgttgcccaccgcacaagtgactgttctgacctgggtctagagctgtcaa 670
| ||||| || |||||||| || || | ||| || || || || || || ||||||||||
Sbjct: 634 ggagctgaggagttgcccagcgaaccaatgattgctcagatctaggccttgagctgtcaa 575
Query: 671 atggtctacgtcctgtcaatagttcaagcatgacaactccaaagctgtaaacatcactct 730
||||| ||||||| || | || || | |||||| | ||||| ||||||||||||||||
Sbjct: 574 atggtttacgtccagtaagaagctccaacatgactgcaccaaaactgtaaacatcactct 515
Query: 731 t 731
|
Sbjct: 514 t 514
>gb|BU811408.1|BU811408 UL83TH09 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 621
Score = 89.7 bits (45), Expect = 5e-016
Identities = 237/301 (78%)
Strand = Plus / Minus
Query: 431 tcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattggtggcc 490
||||||| || |||||||| | |||||||||||||| ||||| |||||||| || || |
Sbjct: 419 tcatgttagctctctgcactaaacgaaccaatgcttgaaccacttctgacataggaggtc 360
Query: 491 tgaattctggttcaggctggacacacagggcaaggacatcagcaaatcgggatagagatt 550
|| ||||| |||||||||||||| || |||| |||||||||||| ||||| |||||||
Sbjct: 359 gaaactctggctcaggctggacacaaagagcaatgacatcagcaaaacgggagagagatt 300
Query: 551 tagctgggtatagacccttgagtgcaggatcgaccatcctgtccaatgcgtcgatgtcat 610
| | ||||| || || |||||| | || || ||||| | || || || |||||||
Sbjct: 299 tgacagggtagagcccattgagttctgggtcaaccattttagataaagcatcaatgtcat 240
Query: 611 gcagctggggtgttgcccaccgcacaagtgactgttctgacctgggtctagagctgtcaa 670
| ||||| || |||||||| || || | ||| || || || || || || ||||||||||
Sbjct: 239 ggagctgaggagttgcccagcgaaccaatgattgctcggatctaggccttgagctgtcaa 180
Query: 671 atggtctacgtcctgtcaatagttcaagcatgacaactccaaagctgtaaacatcactct 730
||||| ||||||| || | || || | |||||| | ||||| ||||||||||||||||
Sbjct: 179 atggtttacgtccagtaagaagctccaacatgactgcaccaaaactgtaaacatcactct 120
Query: 731 t 731
|
Sbjct: 119 t 119
>gb|CA927141.1|CA927141 MTU6CR.P5.E03 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 653
Score = 89.7 bits (45), Expect = 5e-016
Identities = 237/301 (78%)
Strand = Plus / Plus
Query: 431 tcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattggtggcc 490
||||||| || |||||||| | |||||||||||||| ||||| |||||||| || || |
Sbjct: 159 tcatgttagctctctgcactaaacgaaccaatgcttgaaccacttctgacataggaggtc 218
Query: 491 tgaattctggttcaggctggacacacagggcaaggacatcagcaaatcgggatagagatt 550
|| ||||| |||||||||||||| || |||| ||||||||||| ||||| |||||||
Sbjct: 219 gaaactctggctcaggctggacacagagagcaataacatcagcaaaccgggaaagagatt 278
Query: 551 tagctgggtatagacccttgagtgcaggatcgaccatcctgtccaatgcgtcgatgtcat 610
| | ||||| || || |||||| | ||||| ||||| || || | || |||||||
Sbjct: 279 tgacagggtagagccctttgagttctggatcaaccattttggataaggaatcaatgtcat 338
Query: 611 gcagctggggtgttgcccaccgcacaagtgactgttctgacctgggtctagagctgtcaa 670
| ||||| || |||||||| || || | ||||| || || || || || ||||||||||
Sbjct: 339 ggagctgaggagttgcccagcgaaccaaagactgctcagatctaggccttgagctgtcaa 398
Query: 671 atggtctacgtcctgtcaatagttcaagcatgacaactccaaagctgtaaacatcactct 730
||||| ||||||| || | || || | |||||| | ||||| ||||||||||||||||
Sbjct: 399 atggtttacgtccagttagaagctccaacatgaccgcaccaaaactgtaaacatcactct 458
Query: 731 t 731
|
Sbjct: 459 t 459
>gb|CA927157.1|CA927157 MTU6CR.P5.F10 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 654
Score = 89.7 bits (45), Expect = 5e-016
Identities = 237/301 (78%)
Strand = Plus / Plus
Query: 431 tcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattggtggcc 490
||||||| || |||||||| | |||||||||||||| ||||| |||||||| || || |
Sbjct: 160 tcatgttagctctctgcactaaacgaaccaatgcttgaaccacttctgacataggaggtc 219
Query: 491 tgaattctggttcaggctggacacacagggcaaggacatcagcaaatcgggatagagatt 550
|| ||||| |||||||||||||| || |||| ||||||||||| ||||| |||||||
Sbjct: 220 gaaactctggctcaggctggacacagagagcaataacatcagcaaaccgggaaagagatt 279
Query: 551 tagctgggtatagacccttgagtgcaggatcgaccatcctgtccaatgcgtcgatgtcat 610
| | ||||| || || |||||| | ||||| ||||| || || | || |||||||
Sbjct: 280 tgacagggtagagccctttgagttctggatcaaccattttggataaggaatcaatgtcat 339
Query: 611 gcagctggggtgttgcccaccgcacaagtgactgttctgacctgggtctagagctgtcaa 670
| ||||| || |||||||| || || | ||||| || || || || || ||||||||||
Sbjct: 340 ggagctgaggagttgcccagcgaaccaaagactgctcagatctaggccttgagctgtcaa 399
Query: 671 atggtctacgtcctgtcaatagttcaagcatgacaactccaaagctgtaaacatcactct 730
||||| ||||||| || | || || | |||||| | ||||| ||||||||||||||||
Sbjct: 400 atggtttacgtccagttagaagctccaacatgaccgcaccaaaactgtaaacatcactct 459
Query: 731 t 731
|
Sbjct: 460 t 460
>gb|CF235698.1|CF235698 PtaJXT0026A2A0202 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 590
Score = 89.7 bits (45), Expect = 5e-016
Identities = 102/121 (84%)
Strand = Plus / Minus
Query: 431 tcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattggtggcc 490
||||||| || |||||||| | |||||||||||||| ||||| |||||||| || || |
Sbjct: 197 tcatgttagctctctgcaccaaacgaaccaatgcttgaaccacttctgacataggaggtc 138
Query: 491 tgaattctggttcaggctggacacacagggcaaggacatcagcaaatcgggatagagatt 550
|| ||||| |||||||||||||| || |||| |||||||||||| ||||| |||||||
Sbjct: 137 gaaactctggctcaggctggacacaaagagcaatgacatcagcaaaacgggagagagatt 78
Query: 551 t 551
|
Sbjct: 77 t 77
>gb|CV225643.1|CV225643 WS0161.B21_P21 PT-DX-A-7 Populus trichocarpa cDNA clone WS0161_P21
3', mRNA sequence
Length = 859
Score = 89.7 bits (45), Expect = 5e-016
Identities = 237/301 (78%)
Strand = Plus / Plus
Query: 431 tcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattggtggcc 490
||||||| || |||||||| | |||||||||||||| ||||| |||||||| || || |
Sbjct: 282 tcatgttagctctctgcactaaacgaaccaatgcttgaaccacttctgacataggaggtc 341
Query: 491 tgaattctggttcaggctggacacacagggcaaggacatcagcaaatcgggatagagatt 550
|| ||||| ||||||||||||||||| |||| ||||||||||| ||||| |||||||
Sbjct: 342 gaaactctggctcaggctggacacacagagcaataacatcagcaaaccgggaaagagatt 401
Query: 551 tagctgggtatagacccttgagtgcaggatcgaccatcctgtccaatgcgtcgatgtcat 610
| | ||||| || || |||||| | ||||| ||||| || || | || |||||||
Sbjct: 402 tgacagggtagagccctttgagttctggatcaaccattttggataaggaatcaatgtcat 461
Query: 611 gcagctggggtgttgcccaccgcacaagtgactgttctgacctgggtctagagctgtcaa 670
| ||||| || |||||||| || || | || || || || || || || ||||||||||
Sbjct: 462 ggagctgaggagttgcccagcgaaccaaagattgctcagatctaggccttgagctgtcaa 521
Query: 671 atggtctacgtcctgtcaatagttcaagcatgacaactccaaagctgtaaacatcactct 730
||||| ||||||| || | || || | |||||| | ||||| ||||||||||||||||
Sbjct: 522 atggtttacgtccagttagaagctccaacatgaccgcaccaaaactgtaaacatcactct 581
Query: 731 t 731
|
Sbjct: 582 t 582
Score = 67.9 bits (34), Expect = 2e-009
Identities = 148/186 (79%)
Strand = Plus / Plus
Query: 819 gcttgcaagtccagcatctgaaaggtgtggattgaattctgagtccagcaaaatatttga 878
|||||| || ||||||||||| || |||||||||| |||| ||||| || ||||| |
Sbjct: 673 gcttgccaggccagcatctgagagatgtggattgagctctgtgtccaataatatattcgc 732
Query: 879 cgacttgaaattcttatggatgatggatggagaacatatttcatgaaggtactccagtgc 938
||||||| ||||||||| || || ||||| ||||| | |||||| |||||||||| |||
Sbjct: 733 tgacttgatattcttatgaataatagatggcgaacaaacttcatgcaggtactccaatgc 792
Query: 939 acgggcagagccgagtgcgatcttgatacgagagttccagctaagtggcttgctgtactc 998
|| |||| || || || ||||||| ||| || ||||| | | || |||||||||||
Sbjct: 793 ccgagcagtccccagagctatcttgacacgggaattccatatcaaaggtttgctgtactc 852
Query: 999 atctga 1004
||||||
Sbjct: 853 atctga 858
>gb|CV233185.1|CV233185 WS0199.B21_O11 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0199_O11 3', mRNA sequence
Length = 613
Score = 89.7 bits (45), Expect = 5e-016
Identities = 102/121 (84%)
Strand = Plus / Plus
Query: 431 tcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattggtggcc 490
||||||| || |||||||| | |||||||||||||| ||||| |||||||| || || |
Sbjct: 344 tcatgttagctctctgcactaaacgaaccaatgcttgaaccacttctgacataggaggtc 403
Query: 491 tgaattctggttcaggctggacacacagggcaaggacatcagcaaatcgggatagagatt 550
|| ||||| ||||||||||||||||| |||| ||||||||||| ||||| |||||||
Sbjct: 404 gaaactctggctcaggctggacacacagagcaataacatcagcaaaccgggaaagagatt 463
Query: 551 t 551
|
Sbjct: 464 t 464
>gb|CV257011.1|CV257011 WS0245.B21_G15 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0245_G15 3', mRNA sequence
Length = 807
Score = 89.7 bits (45), Expect = 5e-016
Identities = 237/301 (78%)
Strand = Plus / Plus
Query: 431 tcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattggtggcc 490
||||||| || |||||||| | |||||||||||||| ||||| |||||||| || || |
Sbjct: 341 tcatgttagctctctgcactaaacgaaccaatgcttgaaccacttctgacataggaggtc 400
Query: 491 tgaattctggttcaggctggacacacagggcaaggacatcagcaaatcgggatagagatt 550
|| ||||| ||||||||||||||||| |||| ||||||||||| ||||| |||||||
Sbjct: 401 gaaactctggctcaggctggacacacagagcaataacatcagcaaaccgggaaagagatt 460
Query: 551 tagctgggtatagacccttgagtgcaggatcgaccatcctgtccaatgcgtcgatgtcat 610
| | ||||| || || |||||| | ||||| ||||| || || | || |||||||
Sbjct: 461 tgacagggtagagccctttgagttctggatcaaccattttggataaggaatcaatgtcat 520
Query: 611 gcagctggggtgttgcccaccgcacaagtgactgttctgacctgggtctagagctgtcaa 670
| ||||| || |||||||| || || | || || || || || || || ||||||||||
Sbjct: 521 ggagctgaggagttgcccagcgaaccaaagattgctcagatctaggccttgagctgtcaa 580
Query: 671 atggtctacgtcctgtcaatagttcaagcatgacaactccaaagctgtaaacatcactct 730
||||| ||||||| || | || || | |||||| | ||||| ||||||||||||||||
Sbjct: 581 atggtttacgtccagttagaagctccaacatgaccgcaccaaaactgtaaacatcactct 640
Query: 731 t 731
|
Sbjct: 641 t 641
Score = 48.1 bits (24), Expect = 0.002
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 819 gcttgcaagtccagcatctgaaaggtgtggattgaattctgagtccagcaaaatatttga 878
|||||| || |||||||||||||| |||||||||| |||| ||||| || ||||| |
Sbjct: 732 gcttgccaggccagcatctgaaagatgtggattgagctctgtgtccaataatatattcgc 791
Query: 879 cgacttgaaattctta 894
||||||| |||||||
Sbjct: 792 tgacttgatattctta 807
>gb|BP932164.1|BP932164 BP932164 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-032_J14.r 3', mRNA sequence
Length = 542
Score = 89.7 bits (45), Expect = 5e-016
Identities = 201/253 (79%)
Strand = Plus / Plus
Query: 431 tcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattggtggcc 490
||||||| || |||||||| | |||||||||||||| ||||| |||||||| || || |
Sbjct: 263 tcatgttagctctctgcactaaacgaaccaatgcttgaaccacttctgacataggaggtc 322
Query: 491 tgaattctggttcaggctggacacacagggcaaggacatcagcaaatcgggatagagatt 550
|| ||||| |||||||||||||| || |||| |||||||||||| ||||| |||||||
Sbjct: 323 gaaactctggctcaggctggacacaaagagcaatgacatcagcaaaccgggagagagatt 382
Query: 551 tagctgggtatagacccttgagtgcaggatcgaccatcctgtccaatgcgtcgatgtcat 610
| | ||||| || || |||||| | || || ||||| | || || ||||||||||
Sbjct: 383 tgacagggtagagccctttgagttctgggtcaaccattttagataaagcatcgatgtcat 442
Query: 611 gcagctggggtgttgcccaccgcacaagtgactgttctgacctgggtctagagctgtcaa 670
| ||||| || |||||||| || || | ||| || || || || || || ||||||||||
Sbjct: 443 ggagctgaggagttgcccagcgaaccaatgattgctcagatctaggccttgagctgtcaa 502
Query: 671 atggtctacgtcc 683
||||| |||||||
Sbjct: 503 atggtttacgtcc 515
>gb|DT513855.1|DT513855 WS02423.B21_D03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02423_D03 3', mRNA sequence
Length = 861
Score = 89.7 bits (45), Expect = 5e-016
Identities = 237/301 (78%)
Strand = Plus / Plus
Query: 431 tcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattggtggcc 490
||||||| || |||||||| | |||||||||||||| ||||| |||||||| || || |
Sbjct: 355 tcatgttagctctctgcactaaacgaaccaatgcttgaaccacttctgacataggaggtc 414
Query: 491 tgaattctggttcaggctggacacacagggcaaggacatcagcaaatcgggatagagatt 550
|| ||||| ||||||||||||||||| |||| ||||||||||| ||||| |||||||
Sbjct: 415 gaaactctggctcaggctggacacacagagcaataacatcagcaaaccgggaaagagatt 474
Query: 551 tagctgggtatagacccttgagtgcaggatcgaccatcctgtccaatgcgtcgatgtcat 610
| | ||||| || || |||||| | ||||| ||||| || || | || |||||||
Sbjct: 475 tgacagggtagagccctttgagttctggatcaaccattttggataaggaatcaatgtcat 534
Query: 611 gcagctggggtgttgcccaccgcacaagtgactgttctgacctgggtctagagctgtcaa 670
| ||||| || |||||||| || || | || || || || || || || ||||||||||
Sbjct: 535 ggagctgaggagttgcccagcgaaccaaagattgctcagatctaggccttgagctgtcaa 594
Query: 671 atggtctacgtcctgtcaatagttcaagcatgacaactccaaagctgtaaacatcactct 730
||||| ||||||| || | || || | |||||| | ||||| ||||||||||||||||
Sbjct: 595 atggtttacgtccagttagaagctccaacatgaccgcaccaaaactgtaaacatcactct 654
Query: 731 t 731
|
Sbjct: 655 t 655
Score = 63.9 bits (32), Expect = 3e-008
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 819 gcttgcaagtccagcatctgaaaggtgtggattgaattctgagtccagcaaaatatttga 878
|||||| || ||||||||||| || |||||||||| |||| ||||| || ||||| |
Sbjct: 746 gcttgccaggccagcatctgagagatgtggattgagctctgtgtccaataatatattcgc 805
Query: 879 cgacttgaaattcttatggatgatggatggagaacatatttcatgaaggtactcca 934
||||||| ||||||||| || || ||||| ||||| | |||||| ||||||||||
Sbjct: 806 tgacttgatattcttatgaataatagatggcgaacaaacttcatgcaggtactcca 861
>gb|DT514199.1|DT514199 WS02424.B21_C11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02424_C11 3', mRNA sequence
Length = 820
Score = 89.7 bits (45), Expect = 5e-016
Identities = 237/301 (78%)
Strand = Plus / Plus
Query: 431 tcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattggtggcc 490
||||||| || |||||||| | |||||||||||||| ||||| |||||||| || || |
Sbjct: 365 tcatgttagctctctgcactaaacgaaccaatgcttgaaccacttctgacataggaggtc 424
Query: 491 tgaattctggttcaggctggacacacagggcaaggacatcagcaaatcgggatagagatt 550
|| ||||| ||||||||||||||||| |||| ||||||||||| ||||| |||||||
Sbjct: 425 gaaactctggctcaggctggacacacagagcaataacatcagcaaaccgggaaagagatt 484
Query: 551 tagctgggtatagacccttgagtgcaggatcgaccatcctgtccaatgcgtcgatgtcat 610
| | ||||| || || |||||| | ||||| ||||| || || | || |||||||
Sbjct: 485 tgacagggtagagccctttgagttctggatcaaccattttggataaggaatcaatgtcat 544
Query: 611 gcagctggggtgttgcccaccgcacaagtgactgttctgacctgggtctagagctgtcaa 670
| ||||| || |||||||| || || | || || || || || || || ||||||||||
Sbjct: 545 ggagctgaggagttgcccagcgaaccaaagattgctcagatctaggccttgagctgtcaa 604
Query: 671 atggtctacgtcctgtcaatagttcaagcatgacaactccaaagctgtaaacatcactct 730
||||| ||||||| || | || || | |||||| | ||||| ||||||||||||||||
Sbjct: 605 atggtttacgtccagttagaagctccaacatgaccgcaccaaaactgtaaacatcactct 664
Query: 731 t 731
|
Sbjct: 665 t 665
Score = 46.1 bits (23), Expect = 0.007
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 819 gcttgcaagtccagcatctgaaaggtgtggattgaattctgagtcca 865
|||||| || ||||||||||| || ||||||||||| |||| |||||
Sbjct: 756 gcttgccaggccagcatctgagagatgtggattgaactctgtgtcca 802
>gb|CA926957.1|CA926957 MTU6CR.P3.C03 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 654
Score = 81.8 bits (41), Expect = 1e-013
Identities = 236/301 (78%)
Strand = Plus / Plus
Query: 431 tcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattggtggcc 490
||||||| || |||||||| | |||||||||||||| ||||| |||||||| || || |
Sbjct: 160 tcatgttagctctctgcactaaacgaaccaatgcttgaaccacttctgacataggaggtc 219
Query: 491 tgaattctggttcaggctggacacacagggcaaggacatcagcaaatcgggatagagatt 550
|| ||||| |||||||||||||| || |||| ||||||||||| ||||| |||||||
Sbjct: 220 gaaactctggctcaggctggacacagagagcaataacatcagcaaaccgggaaagagatt 279
Query: 551 tagctgggtatagacccttgagtgcaggatcgaccatcctgtccaatgcgtcgatgtcat 610
| | ||||| || || |||||| | ||||| ||||| || || | || |||||||
Sbjct: 280 tgacagggtagagccctttgagttctggatcaaccattttggataaggaatcaatgtcat 339
Query: 611 gcagctggggtgttgcccaccgcacaagtgactgttctgacctgggtctagagctgtcaa 670
| ||||| || |||||||| || || | || || || || || || || ||||||||||
Sbjct: 340 ggagctgaggagttgcccagcgaaccaaagattgctcagatctaggccttgagctgtcaa 399
Query: 671 atggtctacgtcctgtcaatagttcaagcatgacaactccaaagctgtaaacatcactct 730
||||| ||||||| || | || || | |||||| | ||||| ||||||||||||||||
Sbjct: 400 atggtttacgtccagttagaagctccaacatgaccgcaccaaaactgtaaacatcactct 459
Query: 731 t 731
|
Sbjct: 460 t 460
>gb|CK089329.1|CK089329 C001P32.3pR Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA clone C001P32 3', mRNA sequence
Length = 545
Score = 81.8 bits (41), Expect = 1e-013
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 431 tcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattggtggcc 490
||||||| || |||||||| | |||||||||||||| ||||| |||||||| || || |
Sbjct: 261 tcatgttagctctctgcactaaacgaaccaatgcttgaaccacttctgacatagggggtc 320
Query: 491 tgaattctggttcaggctggacacacagggcaaggacatcagcaaatcgggatagagatt 550
|| ||||| |||||||||||||| || |||| ||||||||||| ||||| |||||||
Sbjct: 321 gaaactctggctcaggctggacacagagagcaataacatcagcaaaccgggaaagagatt 380
Query: 551 t 551
|
Sbjct: 381 t 381
>gb|CK093763.1|CK093763 G133P18.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G133P18 3', mRNA sequence
Length = 855
Score = 81.8 bits (41), Expect = 1e-013
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 431 tcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattggtggcc 490
||||||| || |||||||| | |||||||||||||| ||||| |||||||| || || |
Sbjct: 366 tcatgttagctctctgcactaaacgaaccaatgcttgaaccacttctgacatagggggtc 425
Query: 491 tgaattctggttcaggctggacacacagggcaaggacatcagcaaatcgggatagagatt 550
|| ||||| |||||||||||||| || |||| ||||||||||| ||||| |||||||
Sbjct: 426 gaaactctggctcaggctggacacagagagcaataacatcagcaaaccgggaaagagatt 485
Query: 551 t 551
|
Sbjct: 486 t 486
Score = 46.1 bits (23), Expect = 0.007
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 661 gagctgtcaaatggtctacgtcctgtcaatagttcaagcatgacaactccaaagctgtaa 720
||||||||||||||| ||||||| || | || || | |||||| | ||||| ||||||
Sbjct: 596 gagctgtcaaatggtttacgtccagttagaagctccaacatgaccgcaccaaaactgtaa 655
Query: 721 acatcactctt 731
|||||||||||
Sbjct: 656 acatcactctt 666
>gb|CK100111.1|CK100111 C001P32.5pR Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA clone C001P32 5', mRNA sequence
Length = 556
Score = 81.8 bits (41), Expect = 1e-013
Identities = 101/121 (83%)
Strand = Plus / Minus
Query: 431 tcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattggtggcc 490
||||||| || |||||||| | |||||||||||||| ||||| |||||||| || || |
Sbjct: 310 tcatgttagctctctgcactaaacgaaccaatgcttgaaccacttctgacatagggggtc 251
Query: 491 tgaattctggttcaggctggacacacagggcaaggacatcagcaaatcgggatagagatt 550
|| ||||| |||||||||||||| || |||| ||||||||||| ||||| |||||||
Sbjct: 250 gaaactctggctcaggctggacacagagagcaataacatcagcaaaccgggaaagagatt 191
Query: 551 t 551
|
Sbjct: 190 t 190
Score = 46.1 bits (23), Expect = 0.007
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 661 gagctgtcaaatggtctacgtcctgtcaatagttcaagcatgacaactccaaagctgtaa 720
||||||||||||||| ||||||| || | || || | |||||| | ||||| ||||||
Sbjct: 80 gagctgtcaaatggtttacgtccagttagaagctccaacatgaccgcaccaaaactgtaa 21
Query: 721 acatcactctt 731
|||||||||||
Sbjct: 20 acatcactctt 10
>gb|DT469497.1|DT469497 WS01917.C21_P11 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01917_P11 3', mRNA sequence
Length = 536
Score = 81.8 bits (41), Expect = 1e-013
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 431 tcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattggtggcc 490
||||||| || |||||||| | |||||||||||||| ||||| |||||||| || || |
Sbjct: 374 tcatgttagctctctgcactaaacgaaccaatgcttgaaccacttctgacataggaggtc 433
Query: 491 tgaattctggttcaggctggacacacagggcaaggacatcagcaaatcgggatagagatt 550
|| ||||| ||||||||||||||||| |||| ||||| ||||| ||||| |||||||
Sbjct: 434 gaaactctggctcaggctggacacacagagcaataacatccgcaaaccgggaaagagatt 493
Query: 551 t 551
|
Sbjct: 494 t 494
>gb|CV225788.1|CV225788 WS0162.B21_G10 PT-DX-A-7 Populus trichocarpa cDNA clone WS0162_G10
3', mRNA sequence
Length = 840
Score = 79.8 bits (40), Expect = 5e-013
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 688 aatagttcaagcatgacaactccaaagctgtaaacatcactctt 731
|||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 271 aatagttccagcatgacaactccaaagctgtaaacatcactctt 228
>gb|BI127561.1|BI127561 G062P34Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 460
Score = 75.8 bits (38), Expect = 8e-012
Identities = 86/102 (84%)
Strand = Plus / Minus
Query: 1816 atccaaccagtgaaatggttgtttccaacattcagggtttcaaggggaaggttggctaag 1875
|||||||| || ||| | || |||||||||||||| ||||||| ||||| | || | |
Sbjct: 167 atccaacctgtaaaacgattatttccaacattcagattttcaagaggaagacttgcaagg 108
Query: 1876 acattgatataaccagtaaattggttgttctgcaaatacatt 1917
||||||||| | ||||||||||||||||| ||||||||||||
Sbjct: 107 acattgatagagccagtaaattggttgttttgcaaatacatt 66
>gb|CK102055.1|CK102055 G062P34.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G062P34 5', mRNA sequence
Length = 458
Score = 75.8 bits (38), Expect = 8e-012
Identities = 86/102 (84%)
Strand = Plus / Minus
Query: 1816 atccaaccagtgaaatggttgtttccaacattcagggtttcaaggggaaggttggctaag 1875
|||||||| || ||| | || |||||||||||||| ||||||| ||||| | || | |
Sbjct: 159 atccaacctgtaaaacgattatttccaacattcagattttcaagaggaagacttgcaagg 100
Query: 1876 acattgatataaccagtaaattggttgttctgcaaatacatt 1917
||||||||| | ||||||||||||||||| ||||||||||||
Sbjct: 99 acattgatagagccagtaaattggttgttttgcaaatacatt 58
>gb|DT509241.1|DT509241 WS02423.BR_D03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02423_D03 5', mRNA sequence
Length = 886
Score = 75.8 bits (38), Expect = 8e-012
Identities = 86/102 (84%)
Strand = Plus / Minus
Query: 1816 atccaaccagtgaaatggttgtttccaacattcagggtttcaaggggaaggttggctaag 1875
|||||||| || ||| | || |||||||||||||| ||||||| ||||| | || | |
Sbjct: 742 atccaacctgtaaaacgattatttccaacattcagattttcaagaggaagacttgcaagg 683
Query: 1876 acattgatataaccagtaaattggttgttctgcaaatacatt 1917
||||||||| | ||||||||||||||||| ||||||||||||
Sbjct: 682 acattgatagagccagtaaattggttgttttgcaaatacatt 641
>gb|DT509589.1|DT509589 WS02424.BR_C11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02424_C11 5', mRNA sequence
Length = 853
Score = 75.8 bits (38), Expect = 8e-012
Identities = 86/102 (84%)
Strand = Plus / Minus
Query: 1816 atccaaccagtgaaatggttgtttccaacattcagggtttcaaggggaaggttggctaag 1875
|||||||| || ||| | || |||||||||||||| ||||||| ||||| | || | |
Sbjct: 120 atccaacctgtaaaacgattatttccaacattcagattttcaagaggaagacttgcaagg 61
Query: 1876 acattgatataaccagtaaattggttgttctgcaaatacatt 1917
||||||||| | ||||||||||||||||| ||||||||||||
Sbjct: 60 acattgatagagccagtaaattggttgttttgcaaatacatt 19
>gb|BI069432.1|BI069432 C001P32U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 369
Score = 73.8 bits (37), Expect = 3e-011
Identities = 82/97 (84%)
Strand = Plus / Minus
Query: 455 gaaccaatgcttgcaccacctctgacattggtggcctgaattctggttcaggctggacac 514
||||||||||||| ||||| |||||||| || || | || ||||| |||||||||||||
Sbjct: 287 gaaccaatgcttgaaccacttctgacatagggggtcgaaactctggctcaggctggacac 228
Query: 515 acagggcaaggacatcagcaaatcgggatagagattt 551
| || |||| ||||||||||| ||||| ||||||||
Sbjct: 227 agagagcaataacatcagcaaaccgggaaagagattt 191
Score = 40.1 bits (20), Expect = 0.42
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 664 ctgtcaaatggtctacgtcctgtcaatagttcaagcatgacaactccaaagctgtaaaca 723
|||||||||||| ||||||| || | || || | |||||| | ||||| |||||||||
Sbjct: 77 ctgtcaaatggtttacgtccagttagaagctccaacatgaccgcaccaaaactgtaaaca 18
Query: 724 tcactctt 731
||||||||
Sbjct: 17 tcactctt 10
>gb|CA926277.1|CA926277 MTU6CR.P13.B04 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 654
Score = 73.8 bits (37), Expect = 3e-011
Identities = 100/121 (82%)
Strand = Plus / Minus
Query: 431 tcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattggtggcc 490
||||||| || |||||||| | |||||||||||||| ||||| |||||||| || || |
Sbjct: 495 tcatgttagctctctgcactaaacgaaccaatgcttgaaccacttctgacataggaggtc 436
Query: 491 tgaattctggttcaggctggacacacagggcaaggacatcagcaaatcgggatagagatt 550
|| ||||| |||||||||||||| || |||| ||||||||||| ||||| ||||||
Sbjct: 435 gaaactctggctcaggctggacacagagagcaataacatcagcaaaccgggaaggagatt 376
Query: 551 t 551
|
Sbjct: 375 t 375
>gb|BU877957.1|BU877957 V041D05 Populus flower cDNA library Populus trichocarpa cDNA 5 prime,
mRNA sequence
Length = 568
Score = 67.9 bits (34), Expect = 2e-009
Identities = 148/186 (79%)
Strand = Plus / Minus
Query: 819 gcttgcaagtccagcatctgaaaggtgtggattgaattctgagtccagcaaaatatttga 878
|||||| || ||||||||||| || |||||||||| |||| ||||| || ||||| |
Sbjct: 254 gcttgccaggccagcatctgagagatgtggattgagctctgtgtccaataatatattcgc 195
Query: 879 cgacttgaaattcttatggatgatggatggagaacatatttcatgaaggtactccagtgc 938
||||||| ||||||||| || || ||||| ||||| | |||||| |||||||||| |||
Sbjct: 194 tgacttgatattcttatgaataatagatggcgaacaaacttcatgcaggtactccaatgc 135
Query: 939 acgggcagagccgagtgcgatcttgatacgagagttccagctaagtggcttgctgtactc 998
|| |||| || || || ||||||| ||| || ||||| | | || |||||||||||
Sbjct: 134 ccgagcagtccccagagctatcttgacacgggaattccatatcaaaggtttgctgtactc 75
Query: 999 atctga 1004
||||||
Sbjct: 74 atctga 69
Score = 48.1 bits (24), Expect = 0.002
Identities = 174/224 (77%)
Strand = Plus / Minus
Query: 508 tggacacacagggcaaggacatcagcaaatcgggatagagatttagctgggtatagaccc 567
||||||||||| |||| ||||||||||| ||||| |||||||| | ||||| || ||
Sbjct: 568 tggacacacagagcaataacatcagcaaaccgggagagagatttgacagggtagagccct 509
Query: 568 ttgagtgcaggatcgaccatcctgtccaatgcgtcgatgtcatgcagctggggtgttgcc 627
|||||| | ||||| ||||| || || | || |||||||| ||||| || ||||||
Sbjct: 508 ttgagttctggatcaaccattttggataaggaatcaatgtcatggagctgaggagttgcc 449
Query: 628 caccgcacaagtgactgttctgacctgggtctagagctgtcaaatggtctacgtcctgtc 687
|| || || | || || || || || || || ||||||||||||||| ||||||| ||
Sbjct: 448 cagcgaaccaaagattgctcagatctaggccttgagctgtcaaatggtttacgtccagtt 389
Query: 688 aatagttcaagcatgacaactccaaagctgtaaacatcactctt 731
| || || | |||||| | ||||| |||||||||||||||||
Sbjct: 388 agaagctccaacatgaccgcaccaaaactgtaaacatcactctt 345
>gb|BU878902.1|BU878902 V053C05 Populus flower cDNA library Populus trichocarpa cDNA 5 prime,
mRNA sequence
Length = 540
Score = 67.9 bits (34), Expect = 2e-009
Identities = 148/186 (79%)
Strand = Plus / Minus
Query: 819 gcttgcaagtccagcatctgaaaggtgtggattgaattctgagtccagcaaaatatttga 878
|||||| || ||||||||||| || |||||||||| |||| ||||| || ||||| |
Sbjct: 226 gcttgccaggccagcatctgagagatgtggattgagctctgtgtccaataatatattcgc 167
Query: 879 cgacttgaaattcttatggatgatggatggagaacatatttcatgaaggtactccagtgc 938
||||||| ||||||||| || || ||||| ||||| | |||||| |||||||||| |||
Sbjct: 166 tgacttgatattcttatgaataatagatggcgaacaaacttcatgcaggtactccaatgc 107
Query: 939 acgggcagagccgagtgcgatcttgatacgagagttccagctaagtggcttgctgtactc 998
|| |||| || || || ||||||| ||| || ||||| | | || |||||||||||
Sbjct: 106 ccgagcagtccccagagctatcttgacacgggaattccatatcaaaggtttgctgtactc 47
Query: 999 atctga 1004
||||||
Sbjct: 46 atctga 41
Score = 48.1 bits (24), Expect = 0.002
Identities = 174/224 (77%)
Strand = Plus / Minus
Query: 508 tggacacacagggcaaggacatcagcaaatcgggatagagatttagctgggtatagaccc 567
||||||||||| |||| ||||||||||| ||||| |||||||| | ||||| || ||
Sbjct: 540 tggacacacagagcaataacatcagcaaaccgggaaagagatttgacagggtagagccct 481
Query: 568 ttgagtgcaggatcgaccatcctgtccaatgcgtcgatgtcatgcagctggggtgttgcc 627
|||||| | ||||| ||||| || || | || |||||||| ||||| || ||||||
Sbjct: 480 ttgagttctggatcaaccattttggataaggaatcaatgtcatggagctgaggagttgcc 421
Query: 628 caccgcacaagtgactgttctgacctgggtctagagctgtcaaatggtctacgtcctgtc 687
|| || || | || || || || || || || ||||||||||||||| ||||||| ||
Sbjct: 420 cagcgaaccaaagattgctcagatctaggccttgagctgtcaaatggtttacgtccagtt 361
Query: 688 aatagttcaagcatgacaactccaaagctgtaaacatcactctt 731
| || || | |||||| | ||||| |||||||||||||||||
Sbjct: 360 agaagctccaacatgaccgcaccaaaactgtaaacatcactctt 317
>gb|CN523657.1|CN523657 GQ015M11.T3_E11 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M11_E11 5', mRNA sequence
Length = 803
Score = 63.9 bits (32), Expect = 3e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 819 gcttgcaagtccagcatctgaaaggtgtggattgaattctgagtccagcaaaatatttga 878
|||||| || ||||||||||| || |||||||||| |||| ||||| || ||||| |
Sbjct: 561 gcttgccaggccagcatctgagagatgtggattgagctctgtgtccaataatatattcgc 502
Query: 879 cgacttgaaattcttatggatgatggatggagaacatatttcatgaaggtactcca 934
||||||| ||||||||| || || ||||| ||||| | |||||| ||||||||||
Sbjct: 501 tgacttgatattcttatgaataatagatggcgaacaaacttcatgcaggtactcca 446
Score = 46.1 bits (23), Expect = 0.007
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 661 gagctgtcaaatggtctacgtcctgtcaatagttcaagcatgacaactccaaagctgtaa 720
||||||||||||||| ||||||| || | || || | |||||| | ||||| ||||||
Sbjct: 722 gagctgtcaaatggtttacgtccagttagaagctccaacatgaccgcaccaaaactgtaa 663
Query: 721 acatcactctt 731
|||||||||||
Sbjct: 662 acatcactctt 652
>gb|CF231108.1|CF231108 PtaC0017D7D0707 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 570
Score = 60.0 bits (30), Expect = 5e-007
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 694 tcaagcatgacaactccaaagctgtaaacatcactctt 731
||||||| |||||||||||||||||||||||||||||
Sbjct: 463 tcaagcagcacaactccaaagctgtaaacatcactctt 426
>gb|BP930049.1|BP930049 BP930049 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-005_B24.r 3', mRNA sequence
Length = 384
Score = 60.0 bits (30), Expect = 5e-007
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 431 tcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattggtggcc 490
||||||| || |||||||| | |||||||||||||| ||||| |||||||| || || |
Sbjct: 287 tcatgttagctctctgcactaaacgaaccaatgcttgaaccacttctgacataggaggtc 346
Query: 491 tgaattctggttcaggctggacacacagggcaaggaca 528
|| ||||| |||||||||||||| || |||| ||||
Sbjct: 347 gaaactctggctcaggctggacacaaagagcaatgaca 384
>gb|CK103725.1|CK103725 G129P57.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G129P57 5', mRNA sequence
Length = 594
Score = 58.0 bits (29), Expect = 2e-006
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 682 cctgtcaatagttcaagcatgacaactccaaagctgtaaacatcactct 730
||||| || ||||| |||||||| || ||||||||||||||||||||||
Sbjct: 426 cctgttaaaagttctagcatgaccacaccaaagctgtaaacatcactct 378
>gb|CV130606.1|CV130606 B9SP06g08 Populus stem seasonal library Populus deltoides cDNA,
mRNA sequence
Length = 842
Score = 58.0 bits (29), Expect = 2e-006
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 682 cctgtcaatagttcaagcatgacaactccaaagctgtaaacatcactct 730
||||| || ||||| |||||||| || ||||||||||||||||||||||
Sbjct: 589 cctgttaaaagttctagcatgaccacaccaaagctgtaaacatcactct 541
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 472 acctctgacattggtggcctgaattctggttcaggctggacaca 515
||||| |||||||| ||||||||||| ||||||| ||| |||||
Sbjct: 799 acctcagacattgggggcctgaattccggttcagactgaacaca 756
Score = 40.1 bits (20), Expect = 0.42
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 594 caatgcgtcgatgtcatgcagctggggtgttgccca 629
||||| |||||||||||| |||||||| |||||||
Sbjct: 677 caatgtgtcgatgtcatggagctgggggattgccca 642
>gb|CV270754.1|CV270754 WS0152.B21_N12 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0152_N12 3', mRNA sequence
Length = 469
Score = 58.0 bits (29), Expect = 2e-006
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 431 tcatgttggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattggtggcc 490
||||||| || |||||||| | |||||||||||||| ||||| |||||||| || || |
Sbjct: 372 tcatgttagctctctgcactaaacgaaccaatgcttgaaccacttctgacataggaggtc 431
Query: 491 tgaattctggttcaggctggacaca 515
|| ||||| ||||||||||||||
Sbjct: 432 gaaactctggctcaggctggacaca 456
>gb|BU836241.1|BU836241 T084C08 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 615
Score = 56.0 bits (28), Expect = 7e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 472 acctctgacattggtggcctgaattctggttcaggctggacaca 515
||||| |||||| ||||||||||||||||||||| ||| |||||
Sbjct: 179 acctcagacatttgtggcctgaattctggttcagactgaacaca 136
>gb|AJ778077.1|AJ778077 AJ778077 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400039B03F1, mRNA sequence
Length = 674
Score = 56.0 bits (28), Expect = 7e-006
Identities = 94/116 (81%)
Strand = Plus / Minus
Query: 819 gcttgcaagtccagcatctgaaaggtgtggattgaattctgagtccagcaaaatatttga 878
|||||| || ||||||||||| || |||||||||| || | ||||| || ||||| |
Sbjct: 344 gcttgccaggccagcatctgagagatgtggattgagctccgtgtccaataatatattcgc 285
Query: 879 cgacttgaaattcttatggatgatggatggagaacatatttcatgaaggtactcca 934
||||||| ||||||||| || || ||||| ||||| | |||||| ||||||||||
Sbjct: 284 tgacttgatattcttatgaataatagatggcgaacaaacttcatgcaggtactcca 229
Score = 44.1 bits (22), Expect = 0.027
Identities = 73/89 (82%), Gaps = 1/89 (1%)
Strand = Plus / Minus
Query: 661 gagctgtcaaatggtctacgtcctgtcaatagttcaagcatgacaactcc-aaagctgta 719
||||||||||||||| ||||||| || | || || | |||||| || || ||| |||||
Sbjct: 506 gagctgtcaaatggtttacgtccagttagaagctccaacatgaccacaccaaaanctgta 447
Query: 720 aacatcactcttgaaggtgtactgaccgg 748
|||||||||||| || || || |||||||
Sbjct: 446 aacatcactctttaaagtataatgaccgg 418
Score = 42.1 bits (21), Expect = 0.11
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 496 tctggttcaggctggacacacagggcaaggacatcagcaaa 536
||||| |||||||||||||| || |||| |||||||||||
Sbjct: 672 tctggctcaggctggacacagagagcaataacatcagcaaa 632
>gb|CV225706.1|CV225706 WS0162.B21_C19 PT-DX-A-7 Populus trichocarpa cDNA clone WS0162_C19
3', mRNA sequence
Length = 890
Score = 56.0 bits (28), Expect = 7e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 691 agttcaagcatgacaactccaaagctgtaaacatcactct 730
||||| |||||||| || ||||||||||||||||||||||
Sbjct: 708 agttccagcatgaccacaccaaagctgtaaacatcactct 747
Score = 56.0 bits (28), Expect = 7e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 472 acctctgacattggtggcctgaattctggttcaggctggacaca 515
||||| |||||| ||||||||||||||||||||| ||| |||||
Sbjct: 489 acctcagacatttgtggcctgaattctggttcagactgaacaca 532
>gb|DN489836.1|DN489836 T084C08.3pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T084C08 3', mRNA sequence
Length = 573
Score = 56.0 bits (28), Expect = 7e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 472 acctctgacattggtggcctgaattctggttcaggctggacaca 515
||||| |||||| ||||||||||||||||||||| ||| |||||
Sbjct: 396 acctcagacatttgtggcctgaattctggttcagactgaacaca 439
>gb|DN499759.1|DN499759 T084C08.5pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T084C08 5', mRNA sequence
Length = 631
Score = 56.0 bits (28), Expect = 7e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 472 acctctgacattggtggcctgaattctggttcaggctggacaca 515
||||| |||||| ||||||||||||||||||||| ||| |||||
Sbjct: 178 acctcagacatttgtggcctgaattctggttcagactgaacaca 135
>gb|DT522154.1|DT522154 WS02036.B21_D10 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02036_D10 3', mRNA sequence
Length = 628
Score = 56.0 bits (28), Expect = 7e-006
Identities = 82/100 (82%)
Strand = Plus / Plus
Query: 437 tggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattggtggcctgaatt 496
||||||| ||||| |||||||| ||||||||||| || || ||||| || || | ||| |
Sbjct: 393 tggccctttgcactagtcgaactaatgcttgcacaacttcagacatgggagggcggaact 452
Query: 497 ctggttcaggctggacacacagggcaaggacatcagcaaa 536
| ||||| ||||| ||||| ||||||| || ||||||||
Sbjct: 453 ccggttccggctgaacacagagggcaatgatgtcagcaaa 492
>gb|CK116914.1|CK116914 B019P69 Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B019P69 5', mRNA sequence
Length = 437
Score = 50.1 bits (25), Expect = 4e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 703 acaactccaaagctgtaaacatcactctt 731
|||||||| ||||||||||||||||||||
Sbjct: 342 acaactccgaagctgtaaacatcactctt 314
>gb|AJ769971.1|AJ769971 AJ769971 Populus euphratica leaf 3-6 months, adult Populus
euphratica cDNA clone P0001100005C01F1, mRNA sequence
Length = 414
Score = 50.1 bits (25), Expect = 4e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 703 acaactccaaagctgtaaacatcactctt 731
||||||||||||||||| |||||||||||
Sbjct: 1 acaactccaaagctgtagacatcactctt 29
>gb|BU835556.1|BU835556 T075D10 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 609
Score = 48.1 bits (24), Expect = 0.002
Identities = 72/88 (81%)
Strand = Plus / Minus
Query: 457 accaatgcttgcaccacctctgacattggtggcctgaattctggttcaggctggacacac 516
||||||||||| || ||||||||||| ||||||| ||||| || || | ||| ||||
Sbjct: 269 accaatgcttggactacctctgacataggtggccgaaattcaggctccgcctgtgcacag 210
Query: 517 agggcaaggacatcagcaaatcgggata 544
||||||| || |||||| ||||| ||||
Sbjct: 209 agggcaatgatatcagcgaatcgagata 182
Score = 40.1 bits (20), Expect = 0.42
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 685 gtcaatagttcaagcatgacaactccaaagctgtaa 720
|||||||| || ||||| || |||||||||||||||
Sbjct: 41 gtcaatagctccagcatcaccactccaaagctgtaa 6
>gb|CX660262.1|CX660262 PO01020A03 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01020A03 5', mRNA sequence
Length = 586
Score = 48.1 bits (24), Expect = 0.002
Identities = 102/128 (79%)
Strand = Plus / Minus
Query: 604 atgtcatgcagctggggtgttgcccaccgcacaagtgactgttctgacctgggtctagag 663
|||||||| ||||| || |||||||| || || | ||| || || || || || || |||
Sbjct: 520 atgtcatggagctgaggagttgcccagcgaaccaatgattgctcggatctaggccttgag 461
Query: 664 ctgtcaaatggtctacgtcctgtcaatagttcaagcatgacaactccaaagctgtaaaca 723
|||||||||||| ||||||| || | || || | |||||| | ||||| |||||||||
Sbjct: 460 ctgtcaaatggtttacgtcccgtaagaagctccaacatgactgcaccaaaactgtaaaca 401
Query: 724 tcactctt 731
||||||||
Sbjct: 400 tcactctt 393
>gb|DN489744.1|DN489744 T075D10.3pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T075D10 3', mRNA sequence
Length = 595
Score = 48.1 bits (24), Expect = 0.002
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 457 accaatgcttgcaccacctctgacattggtggcctgaattctggttcaggctggacacac 516
||||||||||| || ||||||||||| ||||||| ||||| || || | ||| ||||
Sbjct: 332 accaatgcttggactacctctgacataggtggccgaaattcaggctccgcctgtgcacag 391
Query: 517 agggcaaggacatcagcaaatcgggata 544
||||||| || |||||| ||||| ||||
Sbjct: 392 agggcaatgatatcagcgaatcgagata 419
Score = 40.1 bits (20), Expect = 0.42
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 685 gtcaatagttcaagcatgacaactccaaagctgtaa 720
|||||||| || ||||| || |||||||||||||||
Sbjct: 560 gtcaatagctccagcatcaccactccaaagctgtaa 595
>gb|DN499659.1|DN499659 T075D10.5pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T075D10 5', mRNA sequence
Length = 541
Score = 48.1 bits (24), Expect = 0.002
Identities = 72/88 (81%)
Strand = Plus / Minus
Query: 457 accaatgcttgcaccacctctgacattggtggcctgaattctggttcaggctggacacac 516
||||||||||| || ||||||||||| ||||||| ||||| || || | ||| ||||
Sbjct: 187 accaatgcttggactacctctgacataggtggccgaaattcaggctccgcctgtgcacag 128
Query: 517 agggcaaggacatcagcaaatcgggata 544
||||||| || |||||| ||||| ||||
Sbjct: 127 agggcaatgatatcagcgaatcgagata 100
>gb|DT476879.1|DT476879 WS01231.B21_C22 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01231_C22 3', mRNA sequence
Length = 977
Score = 48.1 bits (24), Expect = 0.002
Identities = 81/100 (81%)
Strand = Plus / Plus
Query: 437 tggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattggtggcctgaatt 496
||||||| ||||| ||||| || ||||||||||| || || ||||| || || | ||| |
Sbjct: 385 tggccctttgcactagtcgtactaatgcttgcacaacttcagacatgggagggcggaact 444
Query: 497 ctggttcaggctggacacacagggcaaggacatcagcaaa 536
| ||||| ||||| ||||| ||||||| || ||||||||
Sbjct: 445 ccggttccggctgaacacagagggcaatgatgtcagcaaa 484
>gb|DT478641.1|DT478641 WS02523.BR_F24 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02523_F24 5', mRNA sequence
Length = 790
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 709 ccaaagctgtaaacatcactcttg 732
||||||||||||||||||||||||
Sbjct: 490 ccaaagctgtaaacatcactcttg 467
>gb|DT519836.1|DT519836 WS02443.B21_N01 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02443_N01 3', mRNA sequence
Length = 838
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 709 ccaaagctgtaaacatcactcttg 732
||||||||||||||||||||||||
Sbjct: 288 ccaaagctgtaaacatcactcttg 311
>gb|CN517876.1|CN517876 GQ0093.B3_B22 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0093_B22 5', mRNA sequence
Length = 558
Score = 46.1 bits (23), Expect = 0.007
Identities = 71/87 (81%)
Strand = Plus / Minus
Query: 437 tggccctctgcacaagtcgaaccaatgcttgcaccacctctgacattggtggcctgaatt 496
||||||| ||||| ||||| || ||||||||||| || || ||||| || || | || |
Sbjct: 293 tggccctttgcactagtcgtactaatgcttgcacaacttcagacatgggagggcgaaact 234
Query: 497 ctggttcaggctggacacacagggcaa 523
| ||||| ||||||||||| |||||||
Sbjct: 233 caggttccggctggacacagagggcaa 207
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 375,888
Number of Sequences: 369679
Number of extensions: 375888
Number of successful extensions: 108106
Number of sequences better than 0.5: 117
Number of HSP's better than 0.5 without gapping: 113
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 107858
Number of HSP's gapped (non-prelim): 212
length of query: 2639
length of database: 203,408,664
effective HSP length: 20
effective length of query: 2619
effective length of database: 196,015,084
effective search space: 513363504996
effective search space used: 513363504996
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)