BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2922023.2.1
(1122 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU877642.1|BU877642 V037C10 Populus flower cDNA library ... 48 7e-004
gb|BU877794.1|BU877794 V039C10 Populus flower cDNA library ... 48 7e-004
gb|BU877933.1|BU877933 V041A10 Populus flower cDNA library ... 48 7e-004
gb|BU878493.1|BU878493 V048A07 Populus flower cDNA library ... 48 7e-004
gb|BU875330.1|BU875330 V005D11 Populus flower cDNA library ... 46 0.003
gb|BU876101.1|BU876101 V016B06 Populus flower cDNA library ... 46 0.003
gb|BU876119.1|BU876119 V016D09 Populus flower cDNA library ... 46 0.003
gb|BU876267.1|BU876267 V018F01 Populus flower cDNA library ... 46 0.003
gb|BU876311.1|BU876311 V019B03 Populus flower cDNA library ... 46 0.003
gb|BU879673.1|BU879673 V063A09 Populus flower cDNA library ... 46 0.003
gb|BU879692.1|BU879692 V063C05 Populus flower cDNA library ... 44 0.011
gb|BU895720.1|BU895720 X030A09 Populus wood cDNA library Po... 44 0.011
gb|CV231269.1|CV231269 WS0194.B21_A10 PT-DX-N-A-10 Populus ... 44 0.011
gb|DN492290.1|DN492290 V063C05.3pR Populus male catkins cDN... 44 0.011
gb|AJ767655.1|AJ767655 AJ767655 Populus euphratica leaf adu... 42 0.045
gb|AJ777976.1|AJ777976 AJ777976 Populus euphratica root 3-6... 42 0.045
gb|AJ778211.1|AJ778211 AJ778211 Populus euphratica root 3-6... 42 0.045
gb|CV267312.1|CV267312 WS02031.B21_G12 PTxN-IB-N-A-11 Popul... 42 0.045
gb|CV282972.1|CV282972 WS0186.B21_B13 PTxD-IL-N-A-9 Populus... 42 0.045
gb|CX174709.1|CX174709 E04_69-45_10.ab1 leaf inoculated wit... 42 0.045
gb|BU811010.1|BU811010 UL78TH05 Populus leaf cDNA library P... 40 0.18
gb|BU824066.1|BU824066 UB59CPH07 Populus tremula cambium cD... 40 0.18
gb|BU885668.1|BU885668 R034D10 Populus root cDNA library Po... 40 0.18
gb|CA924261.1|CA924261 MTU7CL.P3.F07 Aspen leaf cDNA Librar... 40 0.18
gb|CA932231.1|CA932231 MTU5CS.P10.C12 Aspen stem cDNA Libra... 40 0.18
gb|CK097732.1|CK097732 UB59CPH07.3pR Populus active cambium... 40 0.18
gb|CK107513.1|CK107513 UB59CPH07.5pR Populus active cambium... 40 0.18
gb|CK113622.1|CK113622 UR109TG04 Populus root cDNA library ... 40 0.18
gb|CN192842.1|CN192842 PtdH175 hybrid poplar systemically w... 40 0.18
gb|CK319920.1|CK319920 L1P07f11 Populus stem seasonal libra... 40 0.18
gb|AJ768242.1|AJ768242 AJ768242 Populus euphratica leaf adu... 40 0.18
gb|AJ768608.1|AJ768608 AJ768608 Populus euphratica leaf adu... 40 0.18
gb|CV130643.1|CV130643 B9SP07f10 Populus stem seasonal libr... 40 0.18
gb|CV131479.1|CV131479 L2P07e10 Populus stem seasonal libra... 40 0.18
gb|CV240992.1|CV240992 WS02510.B21_O18 PT-MB-N-A-15 Populus... 40 0.18
gb|CV266787.1|CV266787 WS0203.B21_P17 PTxN-IB-N-A-11 Populu... 40 0.18
gb|CV280147.1|CV280147 WS0135.B21_A13 PTxD-IL-FL-A-4 Populu... 40 0.18
gb|CX168254.1|CX168254 G07_69-80_13.ab1 leaf inoculated wit... 40 0.18
gb|CX173799.1|CX173799 D06_69-55_08.ab1 leaf inoculated wit... 40 0.18
gb|CX181846.1|CX181846 A03_45-3_01.ab1 leaf inoculated with... 40 0.18
gb|CX182659.1|CX182659 D01_45-112_07.ab1 leaf inoculated wi... 40 0.18
gb|CX183038.1|CX183038 D04_45-31_08.ab1 leaf inoculated wit... 40 0.18
gb|CX184958.1|CX184958 G04_45-57_14.ab1 leaf inoculated wit... 40 0.18
gb|CX185968.1|CX185968 B12_45-72_04.ab1 leaf inoculated wit... 40 0.18
gb|CX187322.1|CX187322 H08_45-52_16.ab1 leaf inoculated wit... 40 0.18
gb|CX656627.1|CX656627 PO02020E08 Poplar SC cDNA library Po... 40 0.18
gb|BP923283.1|BP923283 BP923283 full-length enriched poplar... 40 0.18
gb|BP923777.1|BP923777 BP923777 full-length enriched poplar... 40 0.18
gb|BP923874.1|BP923874 BP923874 full-length enriched poplar... 40 0.18
gb|BP928397.1|BP928397 BP928397 full-length enriched poplar... 40 0.18
gb|DT473150.1|DT473150 WS01228.BR_L19 PT-GT-FL-A-3 Populus ... 40 0.18
gb|DT476211.1|DT476211 WS01228.B21_L19 PT-GT-FL-A-3 Populus... 40 0.18
gb|DT478614.1|DT478614 WS02523.BR_E15 PT-MB-N-A-15 Populus ... 40 0.18
gb|DT496164.1|DT496164 WS01122.BR_J15 PT-P-FL-A-2 Populus t... 40 0.18
gb|DT502999.1|DT502999 WS0135.BR_A13 PTxD-IL-FL-A-4 Populus... 40 0.18
gb|DT505195.1|DT505195 WS01810.C21_E11 PTxD-IL-N-A-9 Populu... 40 0.18
gb|DT507145.1|DT507145 WS02417.BR_H16 PTxD-ICC-N-A-14 Popul... 40 0.18
>gb|BU877642.1|BU877642 V037C10 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 605
Score = 48.1 bits (24), Expect = 7e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 850 aacgcccagcagctaccgcattggccctggtccttgacgtcggtgacagcgcccttctgc 909
||||||||||| || || ||||| || |||||||| || | || ||||||||||||| |
Sbjct: 589 aacgcccagcaacttccacattgaccttggtccttaacagcagtcacagcgcccttcttc 530
Query: 910 ctccagtc 917
||||||||
Sbjct: 529 ctccagtc 522
>gb|BU877794.1|BU877794 V039C10 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 655
Score = 48.1 bits (24), Expect = 7e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 850 aacgcccagcagctaccgcattggccctggtccttgacgtcggtgacagcgcccttctgc 909
||||||||||| || || ||||| || |||||||| || | || ||||||||||||| |
Sbjct: 107 aacgcccagcaacttccacattgaccttggtccttaacagcagtcacagcgcccttcttc 48
Query: 910 ctccagtc 917
||||||||
Sbjct: 47 ctccagtc 40
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 487 aagaccccctcggagtagaactggaa 512
||||| ||||||||||||||||||||
Sbjct: 476 aagacaccctcggagtagaactggaa 451
>gb|BU877933.1|BU877933 V041A10 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 752
Score = 48.1 bits (24), Expect = 7e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 850 aacgcccagcagctaccgcattggccctggtccttgacgtcggtgacagcgcccttctgc 909
||||||||||| || || ||||| || |||||||| || | || ||||||||||||| |
Sbjct: 460 aacgcccagcaacttccacattgaccttggtccttaacagcagtcacagcgcccttcttc 401
Query: 910 ctccagtc 917
||||||||
Sbjct: 400 ctccagtc 393
>gb|BU878493.1|BU878493 V048A07 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 730
Score = 48.1 bits (24), Expect = 7e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 850 aacgcccagcagctaccgcattggccctggtccttgacgtcggtgacagcgcccttctgc 909
||||||||||| || || ||||| || |||||||| || | || ||||||||||||| |
Sbjct: 601 aacgcccagcaacttccacattgaccttggtccttaacagcagtcacagcgcccttcttc 542
Query: 910 ctccagtc 917
||||||||
Sbjct: 541 ctccagtc 534
>gb|BU875330.1|BU875330 V005D11 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 696
Score = 46.1 bits (23), Expect = 0.003
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 839 cgatcgtcgagaacgcccagcagctaccgcattggccctggtccttgacgtcggtgacag 898
|||| ||||| || |||||||| || || ||||| ||||||||||| || | || ||||
Sbjct: 490 cgatggtcgaaaatgcccagcaacttccacattgaccctggtccttaacagcagtcacag 431
Query: 899 cgcccttctgcctccagtc 917
| ||||||| |||||||||
Sbjct: 430 cacccttcttcctccagtc 412
>gb|BU876101.1|BU876101 V016B06 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 764
Score = 46.1 bits (23), Expect = 0.003
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 839 cgatcgtcgagaacgcccagcagctaccgcattggccctggtccttgacgtcggtgacag 898
|||| ||||| || |||||||| || || ||||| ||||||||||| || | || ||||
Sbjct: 529 cgatggtcgaaaatgcccagcaacttccacattgaccctggtccttaactgcagtcacag 470
Query: 899 cgcccttctgcctccagtc 917
| ||||||| |||||||||
Sbjct: 469 cacccttcttcctccagtc 451
>gb|BU876119.1|BU876119 V016D09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 757
Score = 46.1 bits (23), Expect = 0.003
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 839 cgatcgtcgagaacgcccagcagctaccgcattggccctggtccttgacgtcggtgacag 898
|||| ||||| || |||||||| || || ||||| ||||||||||| || | || ||||
Sbjct: 522 cgatggtcgaaaatgcccagcaacttccacattgaccctggtccttaactgcagtcacag 463
Query: 899 cgcccttctgcctccagtc 917
| ||||||| |||||||||
Sbjct: 462 cacccttcttcctccagtc 444
>gb|BU876267.1|BU876267 V018F01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 613
Score = 46.1 bits (23), Expect = 0.003
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 839 cgatcgtcgagaacgcccagcagctaccgcattggccctggtccttgacgtcggtgacag 898
|||| ||||| || |||||||| || || ||||| ||||||||||| || | || ||||
Sbjct: 486 cgatggtcgaaaatgcccagcaacttccacattgaccctggtccttaactgcagtcacag 427
Query: 899 cgcccttctgcctccagtc 917
| ||||||| |||||||||
Sbjct: 426 cacccttcttcctccagtc 408
>gb|BU876311.1|BU876311 V019B03 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 568
Score = 46.1 bits (23), Expect = 0.003
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 839 cgatcgtcgagaacgcccagcagctaccgcattggccctggtccttgacgtcggtgacag 898
|||| ||||| || |||||||| || || ||||| ||||||||||| || | || ||||
Sbjct: 490 cgatggtcgaaaatgcccagcaacttccacattgaccctggtccttaactgcagtcacag 431
Query: 899 cgcccttctgcctccagtc 917
| ||||||| |||||||||
Sbjct: 430 cacccttcttcctccagtc 412
>gb|BU879673.1|BU879673 V063A09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 520
Score = 46.1 bits (23), Expect = 0.003
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 839 cgatcgtcgagaacgcccagcagctaccgcattggccctggtccttgacgtcggtgacag 898
|||| ||||| || |||||||| || || ||||| ||||||||||| || | || ||||
Sbjct: 285 cgatggtcgaaaatgcccagcaacttccacattgaccctggtccttaactgcagtcacag 226
Query: 899 cgcccttctgcctccagtc 917
| ||||||| |||||||||
Sbjct: 225 cacccttcttcctccagtc 207
>gb|BU879692.1|BU879692 V063C05 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 521
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 487 aagaccccctcggagtagaactggaa 512
||||| ||||||||||||||||||||
Sbjct: 108 aagacaccctcggagtagaactggaa 83
>gb|BU895720.1|BU895720 X030A09 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 613
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 487 aagaccccctcggagtagaactggaa 512
||||| ||||||||||||||||||||
Sbjct: 317 aagacaccctcggagtagaactggaa 292
>gb|CV231269.1|CV231269 WS0194.B21_A10 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0194_A10 3', mRNA sequence
Length = 577
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 487 aagaccccctcggagtagaactggaa 512
||||| ||||||||||||||||||||
Sbjct: 394 aagacaccctcggagtagaactggaa 419
>gb|DN492290.1|DN492290 V063C05.3pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V063C05 3', mRNA sequence
Length = 518
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 487 aagaccccctcggagtagaactggaa 512
||||| ||||||||||||||||||||
Sbjct: 403 aagacaccctcggagtagaactggaa 428
>gb|AJ767655.1|AJ767655 AJ767655 Populus euphratica leaf adult Populus euphratica cDNA
clone P0000100008G06F1, mRNA sequence
Length = 715
Score = 42.1 bits (21), Expect = 0.045
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 712 tggaacgcgtagtccatgaggcccccgttgcagccggcgtt 752
||||| || |||||||||||||| || |||||||| |||||
Sbjct: 319 tggaatgcatagtccatgaggcctccattgcagcctgcgtt 279
>gb|AJ777976.1|AJ777976 AJ777976 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400037F11F1, mRNA sequence
Length = 717
Score = 42.1 bits (21), Expect = 0.045
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 712 tggaacgcgtagtccatgaggcccccgttgcagccggcgtt 752
||||| || |||||||||||||| || |||||||| |||||
Sbjct: 666 tggaatgcatagtccatgaggcctccattgcagcctgcgtt 626
>gb|AJ778211.1|AJ778211 AJ778211 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400040H06F1, mRNA sequence
Length = 691
Score = 42.1 bits (21), Expect = 0.045
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 712 tggaacgcgtagtccatgaggcccccgttgcagccggcgtt 752
||||| || |||||||||||||| || |||||||| |||||
Sbjct: 669 tggaatgcatagtccatgaggcctccattgcagcctgcgtt 629
>gb|CV267312.1|CV267312 WS02031.B21_G12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02031_G12 3', mRNA sequence
Length = 899
Score = 42.1 bits (21), Expect = 0.045
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 712 tggaacgcgtagtccatgaggcccccgttgcagccggcgtt 752
||||| || |||||||||||||| || |||||||| |||||
Sbjct: 821 tggaatgcatagtccatgaggcctccattgcagcctgcgtt 861
>gb|CV282972.1|CV282972 WS0186.B21_B13 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0186_B13 3', mRNA sequence
Length = 866
Score = 42.1 bits (21), Expect = 0.045
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 712 tggaacgcgtagtccatgaggcccccgttgcagccggcgtt 752
||||| || |||||||||||||| || |||||||| |||||
Sbjct: 650 tggaatgcatagtccatgaggcctccattgcagcctgcgtt 610
>gb|CX174709.1|CX174709 E04_69-45_10.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 634
Score = 42.1 bits (21), Expect = 0.045
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 712 tggaacgcgtagtccatgaggcccccgttgcagccggcgtt 752
||||| || |||||||||||||| || |||||||| |||||
Sbjct: 610 tggaatgcatagtccatgaggcctccattgcagcctgcgtt 570
>gb|BU811010.1|BU811010 UL78TH05 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 484
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 762 gtcgcagtccaccagctgctgctc 785
|||||||||||| |||||||||||
Sbjct: 438 gtcgcagtccacaagctgctgctc 415
>gb|BU824066.1|BU824066 UB59CPH07 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 650
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 762 gtcgcagtccaccagctgctgctc 785
|||||||||||| |||||||||||
Sbjct: 595 gtcgcagtccacaagctgctgctc 572
>gb|BU885668.1|BU885668 R034D10 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 673
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 762 gtcgcagtccaccagctgctgctc 785
|||||||||||| |||||||||||
Sbjct: 488 gtcgcagtccacaagctgctgctc 465
>gb|CA924261.1|CA924261 MTU7CL.P3.F07 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 652
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 762 gtcgcagtccaccagctgctgctc 785
|||||||||||| |||||||||||
Sbjct: 578 gtcgcagtccacaagctgctgctc 555
>gb|CA932231.1|CA932231 MTU5CS.P10.C12 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 646
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 762 gtcgcagtccaccagctgctgctc 785
|||||||||||| |||||||||||
Sbjct: 572 gtcgcagtccacaagctgctgctc 549
>gb|CK097732.1|CK097732 UB59CPH07.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB59CPH07 3', mRNA sequence
Length = 893
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 762 gtcgcagtccaccagctgctgctc 785
|||||||||||| |||||||||||
Sbjct: 743 gtcgcagtccacaagctgctgctc 766
>gb|CK107513.1|CK107513 UB59CPH07.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB59CPH07 5', mRNA sequence
Length = 581
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 762 gtcgcagtccaccagctgctgctc 785
|||||||||||| |||||||||||
Sbjct: 556 gtcgcagtccacaagctgctgctc 533
>gb|CK113622.1|CK113622 UR109TG04 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone UR109TG04 5', mRNA sequence
Length = 643
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 762 gtcgcagtccaccagctgctgctc 785
|||||||||||| |||||||||||
Sbjct: 608 gtcgcagtccacaagctgctgctc 585
>gb|CN192842.1|CN192842 PtdH175 hybrid poplar systemically wound-induced leaf cDNA library
Populus trichocarpa x Populus deltoides cDNA 5, mRNA
sequence
Length = 328
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 762 gtcgcagtccaccagctgctgctc 785
|||||||||||| |||||||||||
Sbjct: 67 gtcgcagtccacaagctgctgctc 44
>gb|CK319920.1|CK319920 L1P07f11 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 700
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 762 gtcgcagtccaccagctgctgctc 785
|||||||||||| |||||||||||
Sbjct: 630 gtcgcagtccacaagctgctgctc 607
>gb|AJ768242.1|AJ768242 AJ768242 Populus euphratica leaf adult Populus euphratica cDNA
clone P0000100015F10F1, mRNA sequence
Length = 671
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 762 gtcgcagtccaccagctgctgctc 785
|||||||||||| |||||||||||
Sbjct: 567 gtcgcagtccacaagctgctgctc 544
>gb|AJ768608.1|AJ768608 AJ768608 Populus euphratica leaf adult Populus euphratica cDNA
clone P0000100019G06F1, mRNA sequence
Length = 619
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 762 gtcgcagtccaccagctgctgctc 785
|||||||||||| |||||||||||
Sbjct: 114 gtcgcagtccacaagctgctgctc 91
>gb|CV130643.1|CV130643 B9SP07f10 Populus stem seasonal library Populus deltoides cDNA,
mRNA sequence
Length = 914
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 762 gtcgcagtccaccagctgctgctc 785
|||||||||||| |||||||||||
Sbjct: 635 gtcgcagtccacaagctgctgctc 612
>gb|CV131479.1|CV131479 L2P07e10 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 791
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 762 gtcgcagtccaccagctgctgctc 785
|||||||||||| |||||||||||
Sbjct: 631 gtcgcagtccacaagctgctgctc 608
>gb|CV240992.1|CV240992 WS02510.B21_O18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02510_O18 3', mRNA sequence
Length = 850
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 762 gtcgcagtccaccagctgctgctc 785
|||||||||||| |||||||||||
Sbjct: 729 gtcgcagtccacaagctgctgctc 752
>gb|CV266787.1|CV266787 WS0203.B21_P17 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0203_P17 3', mRNA sequence
Length = 691
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 955 aacgacgacgccgacgccga 974
||||||||||||||||||||
Sbjct: 627 aacgacgacgccgacgccga 608
>gb|CV280147.1|CV280147 WS0135.B21_A13 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0135_A13 3', mRNA sequence
Length = 907
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 762 gtcgcagtccaccagctgctgctc 785
|||||||||||| |||||||||||
Sbjct: 792 gtcgcagtccacaagctgctgctc 815
>gb|CX168254.1|CX168254 G07_69-80_13.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 618
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 762 gtcgcagtccaccagctgctgctc 785
|||||||||||| |||||||||||
Sbjct: 202 gtcgcagtccacaagctgctgctc 179
>gb|CX173799.1|CX173799 D06_69-55_08.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 632
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 762 gtcgcagtccaccagctgctgctc 785
|||||||||||| |||||||||||
Sbjct: 550 gtcgcagtccacaagctgctgctc 527
>gb|CX181846.1|CX181846 A03_45-3_01.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 659
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 762 gtcgcagtccaccagctgctgctc 785
|||||||||||| |||||||||||
Sbjct: 576 gtcgcagtccacaagctgctgctc 553
>gb|CX182659.1|CX182659 D01_45-112_07.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 673
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 762 gtcgcagtccaccagctgctgctc 785
|||||||||||| |||||||||||
Sbjct: 584 gtcgcagtccacaagctgctgctc 561
>gb|CX183038.1|CX183038 D04_45-31_08.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 653
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 762 gtcgcagtccaccagctgctgctc 785
|||||||||||| |||||||||||
Sbjct: 576 gtcgcagtccacaagctgctgctc 553
>gb|CX184958.1|CX184958 G04_45-57_14.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 678
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 762 gtcgcagtccaccagctgctgctc 785
|||||||||||| |||||||||||
Sbjct: 525 gtcgcagtccacaagctgctgctc 502
>gb|CX185968.1|CX185968 B12_45-72_04.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 561
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 762 gtcgcagtccaccagctgctgctc 785
|||||||||||| |||||||||||
Sbjct: 546 gtcgcagtccacaagctgctgctc 523
>gb|CX187322.1|CX187322 H08_45-52_16.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 583
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 762 gtcgcagtccaccagctgctgctc 785
|||||||||||| |||||||||||
Sbjct: 569 gtcgcagtccacaagctgctgctc 546
>gb|CX656627.1|CX656627 PO02020E08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02020E08 5', mRNA sequence
Length = 611
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 762 gtcgcagtccaccagctgctgctc 785
|||||||||||| |||||||||||
Sbjct: 169 gtcgcagtccacaagctgctgctc 146
>gb|BP923283.1|BP923283 BP923283 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-017_M21.f 5', mRNA sequence
Length = 318
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 955 aacgacgacgccgacgccga 974
||||||||||||||||||||
Sbjct: 116 aacgacgacgccgacgccga 135
>gb|BP923777.1|BP923777 BP923777 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-023_M19.f 5', mRNA sequence
Length = 183
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 955 aacgacgacgccgacgccga 974
||||||||||||||||||||
Sbjct: 126 aacgacgacgccgacgccga 145
>gb|BP923874.1|BP923874 BP923874 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-025_A12.f 5', mRNA sequence
Length = 481
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 955 aacgacgacgccgacgccga 974
||||||||||||||||||||
Sbjct: 128 aacgacgacgccgacgccga 147
>gb|BP928397.1|BP928397 BP928397 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-082_O10.f 5', mRNA sequence
Length = 545
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 955 aacgacgacgccgacgccga 974
||||||||||||||||||||
Sbjct: 165 aacgacgacgccgacgccga 184
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 67,549
Number of Sequences: 369679
Number of extensions: 67549
Number of successful extensions: 18145
Number of sequences better than 0.5: 57
Number of HSP's better than 0.5 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18087
Number of HSP's gapped (non-prelim): 58
length of query: 1122
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1103
effective length of database: 196,384,763
effective search space: 216612393589
effective search space used: 216612393589
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)