BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2921718.2.1
(649 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF119018.1|CF119018 MTU10CS.P12.D11 Aspen stem cDNA Libr... 68 5e-010
gb|CF119541.1|CF119541 MTU10CS.P3.B11 Aspen stem cDNA Libra... 68 5e-010
gb|CF119878.1|CF119878 MTU10CS.P7.D09 Aspen stem cDNA Libra... 68 5e-010
gb|CF233991.1|CF233991 PtaJXO1B11B1103 Poplar cDNA library ... 62 3e-008
gb|CV255021.1|CV255021 WS02411.B21_N12 PTxD-ICC-N-A-14 Popu... 60 1e-007
gb|CN521463.1|CN521463 GQ0111.B3_E11 GQ011 Populus trichoca... 56 2e-006
gb|CA925749.1|CA925749 MTU7TL.P5.D09 Aspen leaf cDNA Librar... 54 7e-006
gb|CN520831.1|CN520831 GQ0108.B3_C09 GQ010 Populus trichoca... 54 7e-006
gb|CN523749.1|CN523749 GQ015M11.T3_F10 GQ015 Populus tricho... 54 7e-006
gb|CK319456.1|CK319456 X9P11a03 Populus stem seasonal libra... 54 7e-006
gb|CV243493.1|CV243493 WS0252.B21_A11 PT-MB-N-A-15 Populus ... 54 7e-006
gb|CV261044.1|CV261044 WS02015.B21_L08 PTxN-IB-N-A-11 Popul... 54 7e-006
gb|CV268494.1|CV268494 WS0205.B21_K08 PTxN-IB-N-A-11 Populu... 54 7e-006
gb|CV272637.1|CV272637 WS0158.B21_D22 PTxN-IB-A-6 Populus t... 54 7e-006
gb|DT522999.1|DT522999 WS02038.B21_I04 PTxN-IB-N-A-11 Popul... 54 7e-006
gb|BP933667.1|BP933667 BP933667 full-length enriched poplar... 50 1e-004
gb|CK317839.1|CK317839 B9P02d09 Populus stem seasonal libra... 48 4e-004
gb|AJ776489.1|AJ776489 AJ776489 Populus euphratica root 3-6... 48 4e-004
gb|AI167104.1|AI167104 xylem.est.870 Poplar xylem Lambda ZA... 46 0.002
gb|BU815980.1|BU815980 N058E11 Populus bark cDNA library Po... 46 0.002
gb|BU893572.1|BU893572 P079E11 Populus petioles cDNA librar... 46 0.002
gb|BU898025.1|BU898025 X073E11 Populus wood cDNA library Po... 46 0.002
gb|CK115917.1|CK115917 Y017C02 Populus infected leaf substr... 46 0.002
gb|CK319636.1|CK319636 B9SP06d09 Populus stem seasonal libr... 46 0.002
gb|DN494269.1|DN494269 K019P78.5pR Populus apical shoot cDN... 46 0.002
gb|BU896882.1|BU896882 X047C09 Populus wood cDNA library Po... 44 0.007
gb|AI162882.1|AI162882 A026P17U Hybrid aspen plasmid librar... 42 0.026
gb|AI165115.1|AI165115 A075p46u Hybrid aspen plasmid librar... 42 0.026
gb|BI069182.1|BI069182 C033P38U Populus strain T89 leaves P... 42 0.026
gb|BU889976.1|BU889976 P029A06 Populus petioles cDNA librar... 42 0.026
gb|AI165373.1|AI165373 A082p43u Hybrid aspen plasmid librar... 40 0.10
gb|CV243593.1|CV243593 WS0252.B21_F03 PT-MB-N-A-15 Populus ... 40 0.10
gb|BI069273.1|BI069273 C034P61U Populus strain T89 leaves P... 38 0.40
gb|CX168710.1|CX168710 B11_69-58_03.ab1 leaf inoculated wit... 38 0.40
gb|DT487584.1|DT487584 WS02534.B21_B12 PT-MB-N-A-15 Populus... 38 0.40
gb|DT517600.1|DT517600 WS02434.B21_M09 PTxD-ICC-N-A-14 Popu... 38 0.40
gb|DT519043.1|DT519043 WS02440.B21_B11 PTxD-ICC-N-A-14 Popu... 38 0.40
>gb|CF119018.1|CF119018 MTU10CS.P12.D11 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 787
Score = 67.9 bits (34), Expect = 5e-010
Identities = 154/194 (79%)
Strand = Plus / Minus
Query: 180 tcaagcagcacgcctgcgtctccagcagcatcatcggctggcactccaccgtcggcaagt 239
||||| ||||||| ||| | || ||||| |||||||| ||||||||||| ||||| | |
Sbjct: 499 tcaagaagcacgcttgcatatctagcagtatcatcgggtggcactccactgtcgggagat 440
Query: 240 gggcgcgcgtcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatct 299
|||| || || ||||||||||| ||||| || || || ||||| || || ||||| || |
Sbjct: 439 gggcccgtgtagagaacatgacaatccttggagaagatgtccaagtgtgtgacgaaattt 380
Query: 300 acagcaacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccg 359
||||||| || || || || | || ||||| ||||||||||| ||||| | ||||| |
Sbjct: 379 acagcaatggaggtgtggttttaccccacaaagagatcaaatcgagcattttgaagccag 320
Query: 360 agatcgtcatgtga 373
|||| || ||||||
Sbjct: 319 agattgtaatgtga 306
>gb|CF119541.1|CF119541 MTU10CS.P3.B11 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 590
Score = 67.9 bits (34), Expect = 5e-010
Identities = 154/194 (79%)
Strand = Plus / Minus
Query: 180 tcaagcagcacgcctgcgtctccagcagcatcatcggctggcactccaccgtcggcaagt 239
||||| ||||||| ||| | || ||||| |||||||| ||||||||||| ||||| | |
Sbjct: 499 tcaagaagcacgcttgcatatctagcagtatcatcgggtggcactccactgtcgggagat 440
Query: 240 gggcgcgcgtcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatct 299
|||| || || ||||||||||| ||||| || || || ||||| || || ||||| || |
Sbjct: 439 gggcccgtgtagagaacatgacaatccttggagaagatgtccaagtgtgtgacgaaattt 380
Query: 300 acagcaacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccg 359
||||||| || || || || | || ||||| ||||||||||| ||||| | ||||| |
Sbjct: 379 acagcaatggaggtgtggttttaccccacaaagagatcaaatcgagcattttgaagccag 320
Query: 360 agatcgtcatgtga 373
|||| || ||||||
Sbjct: 319 agattgtaatgtga 306
>gb|CF119878.1|CF119878 MTU10CS.P7.D09 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 599
Score = 67.9 bits (34), Expect = 5e-010
Identities = 154/194 (79%)
Strand = Plus / Minus
Query: 180 tcaagcagcacgcctgcgtctccagcagcatcatcggctggcactccaccgtcggcaagt 239
||||| ||||||| ||| | || ||||| |||||||| ||||||||||| ||||| | |
Sbjct: 499 tcaagaagcacgcttgcatatctagcagtatcatcgggtggcactccactgtcgggagat 440
Query: 240 gggcgcgcgtcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatct 299
|||| || || ||||||||||| ||||| || || || ||||| || || ||||| || |
Sbjct: 439 gggcccgtgtagagaacatgacaatccttggagaagatgtccaagtgtgtgacgaaattt 380
Query: 300 acagcaacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccg 359
||||||| || || || || | || ||||| ||||||||||| ||||| | ||||| |
Sbjct: 379 acagcaatggaggtgtggttttaccccacaaagagatcaaatcgagcattttgaagccag 320
Query: 360 agatcgtcatgtga 373
|||| || ||||||
Sbjct: 319 agattgtaatgtga 306
>gb|CF233991.1|CF233991 PtaJXO1B11B1103 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 633
Score = 61.9 bits (31), Expect = 3e-008
Identities = 136/171 (79%)
Strand = Plus / Plus
Query: 203 agcagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgagaacatgacc 262
||||| |||||||| |||||||||||||| || | ||||| || || |||||| | ||
Sbjct: 159 agcagtatcatcggatggcactccaccgttgggcaatgggcccgtgtagagaacttaaca 218
Query: 263 atcctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggcgtcgtgctc 322
|||||||| || || ||||| || || ||||| || ||||||||||| || || || |
Sbjct: 219 atcctcggagaagatgtccatgtttgtgacgaaatttacagcaacggaggtgtggtttta 278
Query: 323 ccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
|| ||||| ||||||||||| ||||| | ||||| ||||| || ||||||
Sbjct: 279 ccccacaaagagatcaaatcaagcattttgaagccagagatagttatgtga 329
>gb|CV255021.1|CV255021 WS02411.B21_N12 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02411_N12 3', mRNA sequence
Length = 902
Score = 60.0 bits (30), Expect = 1e-007
Identities = 156/198 (78%)
Strand = Plus / Minus
Query: 176 cgcgtcaagcagcacgcctgcgtctccagcagcatcatcggctggcactccaccgtcggc 235
||||||||| |||| || ||| | || ||||| |||||||| |||||||||||||| ||
Sbjct: 467 cgcgtcaagaagcatgcttgcatatctagcagtatcatcggatggcactccaccgttggg 408
Query: 236 aagtgggcgcgcgtcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgag 295
| ||||| || || |||||| | || |||||||| || || ||||| || || || ||
Sbjct: 407 caatgggcccgtgtagagaacttaacaatcctcggagaagatgtccatgtttgtgatgaa 348
Query: 296 atctacagcaacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaag 355
|| ||||||||||| || || || | || ||||| ||||||||||| ||||| | |||
Sbjct: 347 atttacagcaacggaggtgtggttttaccccacaaagagatcaaatcaagcattttgaag 288
Query: 356 cccgagatcgtcatgtga 373
|| ||||| || ||||||
Sbjct: 287 ccagagattgttatgtga 270
>gb|CN521463.1|CN521463 GQ0111.B3_E11 GQ011 Populus trichocarpa x Populus deltoides cDNA
clone GQ0111_E11 5', mRNA sequence
Length = 260
Score = 56.0 bits (28), Expect = 2e-006
Identities = 73/88 (82%)
Strand = Plus / Plus
Query: 180 tcaagcagcacgcctgcgtctccagcagcatcatcggctggcactccaccgtcggcaagt 239
||||| ||||||| ||| | || ||||| |||||||| ||||||||||| ||||| | |
Sbjct: 130 tcaagaagcacgcttgcatatctagcagtatcatcgggtggcactccactgtcgggagat 189
Query: 240 gggcgcgcgtcgagaacatgaccatcct 267
|||| || || ||||||||||| |||||
Sbjct: 190 gggcccgtgtagagaacatgacaatcct 217
>gb|CA925749.1|CA925749 MTU7TL.P5.D09 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 713
Score = 54.0 bits (27), Expect = 7e-006
Identities = 135/171 (78%)
Strand = Plus / Minus
Query: 203 agcagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgagaacatgacc 262
||||| |||||||| |||||||||||||| || | ||||| || || |||||| | ||
Sbjct: 355 agcagtatcatcggatggcactccaccgttgggcaatgggcccgtgtagagaacttaaca 296
Query: 263 atcctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggcgtcgtgctc 322
|||||||| || || ||||| || || || || || ||||||||||| || || || |
Sbjct: 295 atcctcggagaagatgtccatgtttgtgatgaaatttacagcaacggaggtgtggtttta 236
Query: 323 ccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
|| ||||| ||||||||||| ||||| | ||||| ||||| || ||||||
Sbjct: 235 ccccacaaagagatcaaatcaagcattttgaagccagagatagttatgtga 185
>gb|CN520831.1|CN520831 GQ0108.B3_C09 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_C09 5', mRNA sequence
Length = 810
Score = 54.0 bits (27), Expect = 7e-006
Identities = 135/171 (78%)
Strand = Plus / Plus
Query: 203 agcagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgagaacatgacc 262
||||| |||||||| |||||||||||||| || | ||||| || || |||||| | ||
Sbjct: 409 agcagtatcatcggatggcactccaccgttgggcaatgggcccgtgtagagaacttaaca 468
Query: 263 atcctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggcgtcgtgctc 322
|||||||| || || ||||| || || || || || ||||||||||| || || || |
Sbjct: 469 atcctcggagaagatgtccatgtttgtgatgaaatttacagcaacggaggtgtggtttta 528
Query: 323 ccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
|| ||||| ||||||||||| ||||| | ||||| ||||| || ||||||
Sbjct: 529 ccccacaaagagatcaaatcaagcattttgaagccagagattgttatgtga 579
>gb|CN523749.1|CN523749 GQ015M11.T3_F10 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M11_F10 5', mRNA sequence
Length = 738
Score = 54.0 bits (27), Expect = 7e-006
Identities = 135/171 (78%)
Strand = Plus / Minus
Query: 203 agcagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgagaacatgacc 262
||||| |||||||| |||||||||||||| || | ||||| || || |||||| | ||
Sbjct: 457 agcagtatcatcggatggcactccaccgttgggcaatgggcccgtgtagagaacttaaca 398
Query: 263 atcctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggcgtcgtgctc 322
|||||||| || || ||||| || || || || || ||||||||||| || || || |
Sbjct: 397 atcctcggagaagatgtccatgtttgtgatgaaatttacagcaacggaggtgtggtttta 338
Query: 323 ccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
|| ||||| ||||||||||| ||||| | ||||| ||||| || ||||||
Sbjct: 337 ccccacaaagagatcaaatcaagcattttgaagccagagattgttatgtga 287
>gb|CK319456.1|CK319456 X9P11a03 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 343
Score = 54.0 bits (27), Expect = 7e-006
Identities = 135/171 (78%)
Strand = Plus / Plus
Query: 203 agcagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgagaacatgacc 262
||||| |||||||| |||||||||||||| || | ||||| || || |||||| | ||
Sbjct: 164 agcagtatcatcggatggcactccaccgttgggcaatgggcccgtgtagagaacttaaca 223
Query: 263 atcctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggcgtcgtgctc 322
|||||||| || || ||||| || || || || || ||||||||||| || || || |
Sbjct: 224 atcctcggagaagatgtccatgtttgtgatgaaatttacagcaacggaggtgtggtttta 283
Query: 323 ccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
|| ||||| ||||||||||| ||||| | ||||| ||||| || ||||||
Sbjct: 284 ccccacaaagagatcaaatcaagcattttgaagccagagatagttatgtga 334
>gb|CV243493.1|CV243493 WS0252.B21_A11 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0252_A11 3', mRNA sequence
Length = 837
Score = 54.0 bits (27), Expect = 7e-006
Identities = 135/171 (78%)
Strand = Plus / Minus
Query: 203 agcagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgagaacatgacc 262
||||| |||||||| |||||||||||||| || | ||||| || || |||||| | ||
Sbjct: 437 agcagtatcatcggatggcactccaccgttgggcaatgggcccgtgtagagaacttaaca 378
Query: 263 atcctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggcgtcgtgctc 322
|||||||| || || ||||| || || || || || ||||||||||| || || || |
Sbjct: 377 atcctcggagaagatgtccatgtttgtgatgaaatttacagcaacggaggtgtggtttta 318
Query: 323 ccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
|| ||||| ||||||||||| ||||| | ||||| ||||| || ||||||
Sbjct: 317 ccccacaaagagatcaaatcaagcattttgaagccagagatagttatgtga 267
>gb|CV261044.1|CV261044 WS02015.B21_L08 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02015_L08 3', mRNA sequence
Length = 891
Score = 54.0 bits (27), Expect = 7e-006
Identities = 135/171 (78%)
Strand = Plus / Minus
Query: 203 agcagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgagaacatgacc 262
||||| |||||||| |||||||||||||| || | ||||| || || |||||| | ||
Sbjct: 438 agcagtatcatcggatggcactccaccgttgggcaatgggcccgtgtagagaacttaaca 379
Query: 263 atcctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggcgtcgtgctc 322
|||||||| || || ||||| || || || || || ||||||||||| || || || |
Sbjct: 378 atcctcggagaagatgtccatgtttgtgatgaaatttacagcaacggaggtgtggtttta 319
Query: 323 ccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
|| ||||| ||||||||||| ||||| | ||||| ||||| || ||||||
Sbjct: 318 ccccacaaagagatcaaatcaagcattttgaagccagagatagttatgtga 268
>gb|CV268494.1|CV268494 WS0205.B21_K08 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0205_K08 3', mRNA sequence
Length = 697
Score = 54.0 bits (27), Expect = 7e-006
Identities = 135/171 (78%)
Strand = Plus / Minus
Query: 203 agcagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgagaacatgacc 262
||||| |||||||| |||||||||||||| || | ||||| || || |||||| | ||
Sbjct: 428 agcagtatcatcggatggcactccaccgttgggcaatgggcccgtgtagagaacttaaca 369
Query: 263 atcctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggcgtcgtgctc 322
|||||||| || || ||||| || || || || || ||||||||||| || || || |
Sbjct: 368 atcctcggagaagatgtccatgtttgtgatgaaatttacagcaacggaggtgtggtttta 309
Query: 323 ccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
|| ||||| ||||||||||| ||||| | ||||| ||||| || ||||||
Sbjct: 308 ccccacaaagagatcaaatcaagcattttgaagccagagatagttatgtga 258
>gb|CV272637.1|CV272637 WS0158.B21_D22 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0158_D22 3', mRNA sequence
Length = 763
Score = 54.0 bits (27), Expect = 7e-006
Identities = 135/171 (78%)
Strand = Plus / Minus
Query: 203 agcagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgagaacatgacc 262
||||| |||||||| |||||||||||||| || | ||||| || || |||||| | ||
Sbjct: 285 agcagtatcatcggatggcactccaccgttgggcaatgggcccgtgtagagaacttaaca 226
Query: 263 atcctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggcgtcgtgctc 322
|||||||| || || ||||| || || || || || ||||||||||| || || || |
Sbjct: 225 atcctcggagaagatgtccatgtttgtgatgaaatttacagcaacggaggtgtggtttta 166
Query: 323 ccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
|| ||||| ||||||||||| ||||| | ||||| ||||| || ||||||
Sbjct: 165 ccccacaaagagatcaaatcaagcattttgaagccagagatagttatgtga 115
>gb|DT522999.1|DT522999 WS02038.B21_I04 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02038_I04 3', mRNA sequence
Length = 843
Score = 54.0 bits (27), Expect = 7e-006
Identities = 135/171 (78%)
Strand = Plus / Minus
Query: 203 agcagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgagaacatgacc 262
||||| |||||||| |||||||||||||| || | ||||| || || |||||| | ||
Sbjct: 438 agcagtatcatcggatggcactccaccgttgggcaatgggcccgtgtagagaacttaaca 379
Query: 263 atcctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggcgtcgtgctc 322
|||||||| || || ||||| || || || || || ||||||||||| || || || |
Sbjct: 378 atcctcggagaagatgtccatgtttgtgatgaaatttacagcaacggaggtgtggtttta 319
Query: 323 ccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
|| ||||| ||||||||||| ||||| | ||||| ||||| || ||||||
Sbjct: 318 ccccacaaagagatcaaatcaagcattttgaagccagagatagttatgtga 268
>gb|BP933667.1|BP933667 BP933667 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-055_A07.r 3', mRNA sequence
Length = 473
Score = 50.1 bits (25), Expect = 1e-004
Identities = 130/165 (78%)
Strand = Plus / Minus
Query: 209 atcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgagaacatgaccatcctc 268
|||||||| |||||||||||||| || | ||||| || || |||||| | || ||||||
Sbjct: 431 atcatcggatggcactccaccgttgggcaatgggcccgtgtagagaacttaacaatcctc 372
Query: 269 ggcgaggacgtccacgtctgcgacgagatctacagcaacggcggcgtcgtgctcccgcac 328
|| || || ||||| || || || || || ||||||||||| || || || | || |||
Sbjct: 371 ggagaagatgtccatgtttgtgatgaaatttacagcaacggaggtgtggttttaccccac 312
Query: 329 aaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
|| ||||||||||| ||||| | ||||| ||||| || ||||||
Sbjct: 311 aaagagatcaaatcaagcattttgaagccagagatagttatgtga 267
>gb|CK317839.1|CK317839 B9P02d09 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 642
Score = 48.1 bits (24), Expect = 4e-004
Identities = 134/171 (78%)
Strand = Plus / Plus
Query: 203 agcagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgagaacatgacc 262
||||| |||||||| |||||||||||||| || | ||||| || || ||||| | ||
Sbjct: 178 agcagtatcatcggatggcactccaccgttgggcaatgggcccgtgtanagaacttaaca 237
Query: 263 atcctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggcgtcgtgctc 322
|||||||| || || ||||| || || || || || ||||||||||| || || || |
Sbjct: 238 atcctcggagaagatgtccatgtttgtgatgaaatttacagcaacggaggtgtggtttta 297
Query: 323 ccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
|| ||||| ||||||||||| ||||| | ||||| ||||| || ||||||
Sbjct: 298 ccccacaaagagatcaaatcaagcattttgaagccagagatagttatgtga 348
>gb|AJ776489.1|AJ776489 AJ776489 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400013H12F1, mRNA sequence
Length = 328
Score = 48.1 bits (24), Expect = 4e-004
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 180 tcaagcagcacgcctgcgtctccagcagcatcatcggctggcactccaccgtcggcaagt 239
||||| ||||||| ||| | || ||||| |||||||| ||||||||||| ||||| | |
Sbjct: 210 tcaagaagcacgcttgcatatctagcagtatcatcgggtggcactccactgtcgggagat 269
Query: 240 gggcgcgcgtcgagaacatgaccatcct 267
|||| || || |||||||||| |||||
Sbjct: 270 gggcccgtgtacagaacatgacaatcct 297
>gb|AI167104.1|AI167104 xylem.est.870 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 569
Score = 46.1 bits (23), Expect = 0.002
Identities = 135/171 (78%), Gaps = 1/171 (0%)
Strand = Plus / Plus
Query: 203 agcagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgagaacatgacc 262
||||| |||||||| |||||||||||||| || | ||||| || || |||||| | ||
Sbjct: 214 agcagtatcatcggatggcactccaccgttgggcaatgggc-cgtgtagagaacttaaca 272
Query: 263 atcctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggcgtcgtgctc 322
|||||||| || || ||||| || || || || || ||||||||||| || || || |
Sbjct: 273 atcctcggagaagatgtccatgtttgtgatgaaatttacagcaacggaggtgtggtttta 332
Query: 323 ccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
|| ||||| ||||||||||| ||||| | ||||| ||||| || ||||||
Sbjct: 333 ccccacaaagagatcaaatcaagcattttgaagccagagatagttatgtga 383
>gb|BU815980.1|BU815980 N058E11 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 547
Score = 46.1 bits (23), Expect = 0.002
Identities = 134/171 (78%)
Strand = Plus / Plus
Query: 203 agcagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgagaacatgacc 262
||||| |||||||| |||||||||||||| || | ||||| || || |||||| | ||
Sbjct: 85 agcagtatcatcggatggcactccaccgttgggcaatgggcccgtgtagagaacttaaca 144
Query: 263 atcctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggcgtcgtgctc 322
|||||||| || || || || || || || || || ||||||||||| || || || |
Sbjct: 145 atcctcggagaagatgttcatgtttgtgatgaaatttacagcaacggaggtgtggtttta 204
Query: 323 ccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
|| ||||| ||||||||||| ||||| | ||||| ||||| || ||||||
Sbjct: 205 ccccacaaagagatcaaatcaagcattttgaagccagagatagttatgtga 255
>gb|BU893572.1|BU893572 P079E11 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 582
Score = 46.1 bits (23), Expect = 0.002
Identities = 134/171 (78%)
Strand = Plus / Plus
Query: 203 agcagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgagaacatgacc 262
||||| |||||||| |||||||||||||| || | ||||| || || |||||| | ||
Sbjct: 149 agcagtatcatcggatggcactccaccgttgggcaatgggcccgtgtagagaacttaaca 208
Query: 263 atcctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggcgtcgtgctc 322
|||||||| || || || || || || || || || ||||||||||| || || || |
Sbjct: 209 atcctcggagaagatgttcatgtttgtgatgaaatttacagcaacggaggtgtggtttta 268
Query: 323 ccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
|| ||||| ||||||||||| ||||| | ||||| ||||| || ||||||
Sbjct: 269 ccccacaaagagatcaaatcaagcattttgaagccagagatagttatgtga 319
>gb|BU898025.1|BU898025 X073E11 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 478
Score = 46.1 bits (23), Expect = 0.002
Identities = 134/171 (78%)
Strand = Plus / Plus
Query: 203 agcagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgagaacatgacc 262
||||| |||||||| |||||||||||||| || | ||||| || || |||||| | ||
Sbjct: 17 agcagtatcatcggatggcactccaccgttgggcaatgggcccgtgtagagaacttaacg 76
Query: 263 atcctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggcgtcgtgctc 322
|||||||| || || || || || || || || || ||||||||||| || || || |
Sbjct: 77 atcctcggagaagatgttcatgtttgtgatgaaatttacagcaacggaggtgtggtttta 136
Query: 323 ccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
|| ||||| ||||||||||| ||||| | ||||| ||||| || ||||||
Sbjct: 137 ccccacaaagagatcaaatcaagcattttgaagccagagatagttatgtga 187
>gb|CK115917.1|CK115917 Y017C02 Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y017C02 5', mRNA sequence
Length = 531
Score = 46.1 bits (23), Expect = 0.002
Identities = 134/171 (78%)
Strand = Plus / Plus
Query: 203 agcagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgagaacatgacc 262
||||| |||||||| |||||||||||||| || | ||||| || || |||||| | ||
Sbjct: 89 agcagtatcatcggatggcactccaccgttgggcaatgggcccgtgtagagaacttaaca 148
Query: 263 atcctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggcgtcgtgctc 322
|||||||| || || || || || || || || || ||||||||||| || || || |
Sbjct: 149 atcctcggagaagatgttcatgtttgtgatgaaatttacagcaacggaggtgtggtttta 208
Query: 323 ccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
|| ||||| ||||||||||| ||||| | ||||| ||||| || ||||||
Sbjct: 209 ccccacaaagagatcaaatcaagcattttgaagccagagatagttatgtga 259
>gb|CK319636.1|CK319636 B9SP06d09 Populus stem seasonal library Populus deltoides cDNA,
mRNA sequence
Length = 480
Score = 46.1 bits (23), Expect = 0.002
Identities = 86/107 (80%)
Strand = Plus / Plus
Query: 203 agcagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgagaacatgacc 262
||||| |||||||| |||||||||||||| || | ||||| || || |||||| | ||
Sbjct: 367 agcagtatcatcggatggcactccaccgttgggcaatgggcccgtgtagagaacttaaca 426
Query: 263 atcctcggcgaggacgtccacgtctgcgacgagatctacagcaacgg 309
|||||||| || || ||||| || || || || || |||||||||||
Sbjct: 427 atcctcggagaagatgtccatgtttgtgatgaaatttacagcaacgg 473
>gb|DN494269.1|DN494269 K019P78.5pR Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA clone K019P78 5', mRNA sequence
Length = 588
Score = 46.1 bits (23), Expect = 0.002
Identities = 134/171 (78%)
Strand = Plus / Plus
Query: 203 agcagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgagaacatgacc 262
||||| |||||||| |||||||||||||| || | ||||| || || |||||| | ||
Sbjct: 348 agcagtatcatcggatggcactccaccgttgggcaatgggcccgtgtagagaacttaaca 407
Query: 263 atcctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggcgtcgtgctc 322
|||||||| || || || || || || || || || ||||||||||| || || || |
Sbjct: 408 atcctcggagaagatgttcatgtttgtgatgaaatttacagcaacggaggtgtggtttta 467
Query: 323 ccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
|| ||||| ||||||||||| ||||| | ||||| ||||| || ||||||
Sbjct: 468 ccccacaaagagatcaaatcaagcattttgaagccagagatagttatgtga 518
>gb|BU896882.1|BU896882 X047C09 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 580
Score = 44.1 bits (22), Expect = 0.007
Identities = 115/146 (78%)
Strand = Plus / Plus
Query: 203 agcagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgagaacatgacc 262
||||| |||||||| |||||||||||||| || | ||||| || || |||||| | ||
Sbjct: 292 agcagtatcatcggatggcactccaccgttgggcaatgggcccgtgtagagaacttaaca 351
Query: 263 atcctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggcgtcgtgctc 322
|||||||| || || || || || || || || || ||||||||||| || || || |
Sbjct: 352 atcctcggagaagatgttcatgtttgtgatgaaatttacagcaacggaggtgtggtttta 411
Query: 323 ccgcacaaggagatcaaatccagcat 348
|| ||||| ||||||||||| |||||
Sbjct: 412 ccccacaaagagatcaaatcaagcat 437
>gb|AI162882.1|AI162882 A026P17U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 440
Score = 42.1 bits (21), Expect = 0.026
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 203 agcagcatcatcggctggcactccaccgt 231
||||| |||||||| ||||||||||||||
Sbjct: 192 agcagtatcatcggatggcactccaccgt 220
>gb|AI165115.1|AI165115 A075p46u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 400
Score = 42.1 bits (21), Expect = 0.026
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 203 agcagcatcatcggctggcactccaccgt 231
||||| |||||||| ||||||||||||||
Sbjct: 254 agcagtatcatcggatggcactccaccgt 282
>gb|BI069182.1|BI069182 C033P38U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 319
Score = 42.1 bits (21), Expect = 0.026
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 437 catcgcatcgcatcccatcccatcc 461
||||||||| |||||||||||||||
Sbjct: 175 catcgcatcacatcccatcccatcc 199
>gb|BU889976.1|BU889976 P029A06 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 475
Score = 42.1 bits (21), Expect = 0.026
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 203 agcagcatcatcggctggcactccaccgt 231
||||| |||||||| ||||||||||||||
Sbjct: 440 agcagtatcatcggatggcactccaccgt 468
>gb|AI165373.1|AI165373 A082p43u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 417
Score = 40.1 bits (20), Expect = 0.10
Identities = 30/32 (93%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 203 agcagcatcatcggctggcactccaccgtcgg 234
|||||||||||||| ||||||||||| |||||
Sbjct: 387 agcagcatcatcgg-tggcactccactgtcgg 417
>gb|CV243593.1|CV243593 WS0252.B21_F03 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0252_F03 3', mRNA sequence
Length = 519
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 aattcggcacgaggccaggc 20
||||||||||||||||||||
Sbjct: 514 aattcggcacgaggccaggc 495
>gb|BI069273.1|BI069273 C034P61U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 375
Score = 38.2 bits (19), Expect = 0.40
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 203 agcagcatcatcggctggcactccacc 229
||||| |||||||| ||||||||||||
Sbjct: 136 agcagtatcatcggatggcactccacc 162
>gb|CX168710.1|CX168710 B11_69-58_03.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 368
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 aattcggcacgaggccagg 19
|||||||||||||||||||
Sbjct: 14 aattcggcacgaggccagg 32
>gb|DT487584.1|DT487584 WS02534.B21_B12 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02534_B12 3', mRNA sequence
Length = 935
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 aattcggcacgaggccagg 19
|||||||||||||||||||
Sbjct: 823 aattcggcacgaggccagg 841
>gb|DT517600.1|DT517600 WS02434.B21_M09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02434_M09 3', mRNA sequence
Length = 499
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 aattcggcacgaggccagg 19
|||||||||||||||||||
Sbjct: 494 aattcggcacgaggccagg 476
>gb|DT519043.1|DT519043 WS02440.B21_B11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02440_B11 3', mRNA sequence
Length = 598
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 aattcggcacgaggccagg 19
|||||||||||||||||||
Sbjct: 593 aattcggcacgaggccagg 575
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 72,522
Number of Sequences: 369679
Number of extensions: 72522
Number of successful extensions: 28528
Number of sequences better than 0.5: 37
Number of HSP's better than 0.5 without gapping: 36
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 28465
Number of HSP's gapped (non-prelim): 40
length of query: 649
length of database: 203,408,664
effective HSP length: 19
effective length of query: 630
effective length of database: 196,384,763
effective search space: 123722400690
effective search space used: 123722400690
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)