BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2835489.2.1
(885 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU891577.1|BU891577 P052D05 Populus petioles cDNA librar... 40 0.14
gb|CV236845.1|CV236845 WS01225.B21.1_L03 PT-GT-FL-A-3 Popul... 40 0.14
gb|CV254903.1|CV254903 WS02411.B21_I11 PTxD-ICC-N-A-14 Popu... 40 0.14
gb|CV255036.1|CV255036 WS02411.B21_O03 PTxD-ICC-N-A-14 Popu... 40 0.14
gb|CV258754.1|CV258754 WS0201.B21_G19 PTxN-IB-N-A-11 Populu... 40 0.14
gb|CV270069.1|CV270069 WS0151.B21_A03 PTxN-IB-A-6 Populus t... 40 0.14
gb|CX654077.1|CX654077 PO02012G03 Poplar SC cDNA library Po... 40 0.14
gb|CX658030.1|CX658030 PO01008D12 Poplar SC cDNA library Po... 40 0.14
gb|DT522080.1|DT522080 WS02036.B21_A02 PTxN-IB-N-A-11 Popul... 40 0.14
>gb|BU891577.1|BU891577 P052D05 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 548
Score = 40.1 bits (20), Expect = 0.14
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 264 tcacttccaggcagccaggcagcgactagagc 295
||||||||||| ||||||||||| || |||||
Sbjct: 484 tcacttccagggagccaggcagcaacaagagc 453
>gb|CV236845.1|CV236845 WS01225.B21.1_L03 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01225_L03 3', mRNA sequence
Length = 893
Score = 40.1 bits (20), Expect = 0.14
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 264 tcacttccaggcagccaggcagcgactagagc 295
||||||||||| ||||||||||| || |||||
Sbjct: 275 tcacttccagggagccaggcagcaacaagagc 306
>gb|CV254903.1|CV254903 WS02411.B21_I11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02411_I11 3', mRNA sequence
Length = 551
Score = 40.1 bits (20), Expect = 0.14
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 264 tcacttccaggcagccaggcagcgactagagc 295
||||||||||| ||||||||||| || |||||
Sbjct: 288 tcacttccagggagccaggcagcaacaagagc 319
>gb|CV255036.1|CV255036 WS02411.B21_O03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02411_O03 3', mRNA sequence
Length = 778
Score = 40.1 bits (20), Expect = 0.14
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 264 tcacttccaggcagccaggcagcgactagagc 295
||||||||||| ||||||||||| || |||||
Sbjct: 288 tcacttccagggagccaggcagcaacaagagc 319
>gb|CV258754.1|CV258754 WS0201.B21_G19 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0201_G19 3', mRNA sequence
Length = 387
Score = 40.1 bits (20), Expect = 0.14
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 264 tcacttccaggcagccaggcagcgactagagc 295
||||||||||| ||||||||||| || |||||
Sbjct: 289 tcacttccagggagccaggcagcaacaagagc 320
>gb|CV270069.1|CV270069 WS0151.B21_A03 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0151_A03 3', mRNA sequence
Length = 583
Score = 40.1 bits (20), Expect = 0.14
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 264 tcacttccaggcagccaggcagcgactagagc 295
||||||||||| ||||||||||| || |||||
Sbjct: 289 tcacttccagggagccaggcagcaacaagagc 320
>gb|CX654077.1|CX654077 PO02012G03 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02012G03 5', mRNA sequence
Length = 608
Score = 40.1 bits (20), Expect = 0.14
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 264 tcacttccaggcagccaggcagcgactagagc 295
||||||||||| ||||||||||| || |||||
Sbjct: 323 tcacttccagggagccaggcagcaacaagagc 292
>gb|CX658030.1|CX658030 PO01008D12 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01008D12 5', mRNA sequence
Length = 653
Score = 40.1 bits (20), Expect = 0.14
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 264 tcacttccaggcagccaggcagcgactagagc 295
||||||||||| ||||||||||| || |||||
Sbjct: 394 tcacttccagggagccaggcagcaacaagagc 363
>gb|DT522080.1|DT522080 WS02036.B21_A02 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02036_A02 3', mRNA sequence
Length = 387
Score = 40.1 bits (20), Expect = 0.14
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 264 tcacttccaggcagccaggcagcgactagagc 295
||||||||||| ||||||||||| || |||||
Sbjct: 289 tcacttccagggagccaggcagcaacaagagc 320
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 99,009
Number of Sequences: 369679
Number of extensions: 99009
Number of successful extensions: 26121
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26104
Number of HSP's gapped (non-prelim): 17
length of query: 885
length of database: 203,408,664
effective HSP length: 19
effective length of query: 866
effective length of database: 196,384,763
effective search space: 170069204758
effective search space used: 170069204758
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)