BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2763121.2.1
(1190 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA821371.1|CA821371 RSH02A05 two-month-old roots from cl... 58 8e-007
gb|AJ776984.1|AJ776984 AJ776984 Populus euphratica root 3-6... 58 8e-007
gb|CX660107.1|CX660107 PO01018B04 Poplar SC cDNA library Po... 58 8e-007
gb|DT506706.1|DT506706 WS02416.BR_E19 PTxD-ICC-N-A-14 Popul... 58 8e-007
dbj|D13683.1|POPHPOX14 Populus kitakamiensis HPOX14 gene fo... 58 8e-007
gb|CK106263.1|CK106263 UB14CPH05.5pR Populus active cambium... 50 2e-004
gb|CV243529.1|CV243529 WS0252.B21_C04 PT-MB-N-A-15 Populus ... 50 2e-004
gb|BU869110.1|BU869110 M126B09 Populus flower cDNA library ... 48 8e-004
gb|BU884141.1|BU884141 R006E02 Populus root cDNA library Po... 48 8e-004
gb|BU884454.1|BU884454 R010H07 Populus root cDNA library Po... 48 8e-004
gb|CX658116.1|CX658116 PO01009F05 Poplar SC cDNA library Po... 48 8e-004
gb|DN494774.1|DN494774 M126B09.5pR Populus female catkins c... 48 8e-004
gb|DV466044.1|DV466044 MTUNUL1.P46.F04 NUL Populus fremonti... 48 8e-004
gb|BU820813.1|BU820813 UB14CPH05 Populus tremula cambium cD... 44 0.012
gb|CV273744.1|CV273744 WS01712.B21_A13 PTxD-NR-A-8 Populus ... 44 0.012
gb|DT497261.1|DT497261 WS01125.BR_P09 PT-P-FL-A-2 Populus t... 44 0.012
gb|DT498876.1|DT498876 WS0116.BR_J19 PT-P-FL-A-2 Populus tr... 44 0.012
gb|DT506674.1|DT506674 WS02416.BR_D10 PTxD-ICC-N-A-14 Popul... 44 0.012
gb|DT509703.1|DT509703 WS02424.BR_H11 PTxD-ICC-N-A-14 Popul... 44 0.012
gb|DT514309.1|DT514309 WS02424.B21_H11 PTxD-ICC-N-A-14 Popu... 44 0.012
gb|DV465234.1|DV465234 MTUNUL1.P36.H10 NUL Populus fremonti... 44 0.012
gb|AJ775830.1|AJ775830 AJ775830 Populus euphratica root 3-6... 42 0.048
gb|CX656849.1|CX656849 PO02026A02 Poplar SC cDNA library Po... 40 0.19
gb|BP923892.1|BP923892 BP923892 full-length enriched poplar... 40 0.19
gb|AF185574.2| Populus tremuloides transcription factor MAG... 40 0.19
>gb|CA821371.1|CA821371 RSH02A05 two-month-old roots from clone 'Beaupre' grown for 19 days
under restricted irrigation Populus trichocarpa x
Populus deltoides cDNA 5', mRNA sequence
Length = 633
Score = 58.0 bits (29), Expect = 8e-007
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 341 tgccctggtgttgtctcctgcgctgacat 369
|||||||||||||||||||||||||||||
Sbjct: 418 tgccctggtgttgtctcctgcgctgacat 446
>gb|AJ776984.1|AJ776984 AJ776984 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400021C12F1, mRNA sequence
Length = 776
Score = 58.0 bits (29), Expect = 8e-007
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 341 tgccctggtgttgtctcctgcgctgacat 369
|||||||||||||||||||||||||||||
Sbjct: 410 tgccctggtgttgtctcctgcgctgacat 438
>gb|CX660107.1|CX660107 PO01018B04 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01018B04 5', mRNA sequence
Length = 714
Score = 58.0 bits (29), Expect = 8e-007
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 341 tgccctggtgttgtctcctgcgctgacat 369
|||||||||||||||||||||||||||||
Sbjct: 257 tgccctggtgttgtctcctgcgctgacat 285
>gb|DT506706.1|DT506706 WS02416.BR_E19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_E19 5', mRNA sequence
Length = 838
Score = 58.0 bits (29), Expect = 8e-007
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 341 tgccctggtgttgtctcctgcgctgacat 369
|||||||||||||||||||||||||||||
Sbjct: 410 tgccctggtgttgtctcctgcgctgacat 438
>dbj|D13683.1|POPHPOX14 Populus kitakamiensis HPOX14 gene for peroxidase, partial cds,
exons 2-4
Length = 954
Score = 58.0 bits (29), Expect = 8e-007
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 341 tgccctggtgttgtctcctgcgctgacat 369
|||||||||||||||||||||||||||||
Sbjct: 104 tgccctggtgttgtctcctgcgctgacat 132
>gb|CK106263.1|CK106263 UB14CPH05.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB14CPH05 5', mRNA sequence
Length = 698
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 341 tgccctggtgttgtctcctgcgctgacat 369
||||||||||||||||| |||||||||||
Sbjct: 411 tgccctggtgttgtctcatgcgctgacat 439
>gb|CV243529.1|CV243529 WS0252.B21_C04 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0252_C04 3', mRNA sequence
Length = 434
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 341 tgccctggtgttgtctcctgcgctgacat 369
||||||||||||||||| |||||||||||
Sbjct: 322 tgccctggtgttgtctcatgcgctgacat 350
>gb|BU869110.1|BU869110 M126B09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 670
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 339 cctgccctggtgttgtctcctgcgctgacatc 370
|||||||||||||||| ||||| |||||||||
Sbjct: 402 cctgccctggtgttgtgtcctgtgctgacatc 433
>gb|BU884141.1|BU884141 R006E02 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 739
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 339 cctgccctggtgttgtctcctgcgctgacatc 370
|||||||||||||||| ||||| |||||||||
Sbjct: 388 cctgccctggtgttgtgtcctgtgctgacatc 419
>gb|BU884454.1|BU884454 R010H07 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 613
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 338 gcctgccctggtgttgtctcctgcgctgacat 369
|||||||||| |||||||||||| ||||||||
Sbjct: 494 gcctgccctgctgttgtctcctgtgctgacat 525
>gb|CX658116.1|CX658116 PO01009F05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01009F05 5', mRNA sequence
Length = 594
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 339 cctgccctggtgttgtctcctgcgctgacatc 370
|||||||||||||||| ||||| |||||||||
Sbjct: 142 cctgccctggtgttgtgtcctgtgctgacatc 173
>gb|DN494774.1|DN494774 M126B09.5pR Populus female catkins cDNA library Populus trichocarpa
cDNA clone M126B09 5', mRNA sequence
Length = 646
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 339 cctgccctggtgttgtctcctgcgctgacatc 370
|||||||||||||||| ||||| |||||||||
Sbjct: 395 cctgccctggtgttgtgtcctgtgctgacatc 426
>gb|DV466044.1|DV466044 MTUNUL1.P46.F04 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 756
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 339 cctgccctggtgttgtctcctgcgctgacatc 370
|||||||||||||||| ||||| |||||||||
Sbjct: 418 cctgccctggtgttgtgtcctgtgctgacatc 449
>gb|BU820813.1|BU820813 UB14CPH05 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 431
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 341 tgccctggtgttgtctcctgcgctga 366
||||||||||||||||| ||||||||
Sbjct: 406 tgccctggtgttgtctcatgcgctga 431
>gb|CV273744.1|CV273744 WS01712.B21_A13 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS01712_A13 3', mRNA sequence
Length = 960
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 341 tgccctggtgttgtctcctgcgctga 366
|||||||||||||||||||| |||||
Sbjct: 785 tgccctggtgttgtctcctgtgctga 760
>gb|DT497261.1|DT497261 WS01125.BR_P09 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01125_P09 5', mRNA sequence
Length = 860
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 353 gtctcctgcgctgacatcctcgccatcgcc 382
||||||||||| ||||||||| ||||||||
Sbjct: 456 gtctcctgcgccgacatcctcaccatcgcc 485
>gb|DT498876.1|DT498876 WS0116.BR_J19 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0116_J19
5', mRNA sequence
Length = 499
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 353 gtctcctgcgctgacatcctcgccatcgcc 382
||||||||||| ||||||||| ||||||||
Sbjct: 455 gtctcctgcgccgacatcctcaccatcgcc 484
>gb|DT506674.1|DT506674 WS02416.BR_D10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_D10 5', mRNA sequence
Length = 790
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 353 gtctcctgcgctgacatcctcgccatcgcc 382
||||||||||| ||||||||| ||||||||
Sbjct: 461 gtctcctgcgccgacatcctcaccatcgcc 490
>gb|DT509703.1|DT509703 WS02424.BR_H11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02424_H11 5', mRNA sequence
Length = 906
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 341 tgccctggtgttgtctcctgcgctga 366
|||||||||||||||||||| |||||
Sbjct: 376 tgccctggtgttgtctcctgtgctga 401
>gb|DT514309.1|DT514309 WS02424.B21_H11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02424_H11 3', mRNA sequence
Length = 808
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 341 tgccctggtgttgtctcctgcgctga 366
|||||||||||||||||||| |||||
Sbjct: 787 tgccctggtgttgtctcctgtgctga 762
>gb|DV465234.1|DV465234 MTUNUL1.P36.H10 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 933
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 353 gtctcctgcgctgacatcctcgccatcgcc 382
||||||||||| ||||||||||||| ||||
Sbjct: 484 gtctcctgcgccgacatcctcgccaccgcc 513
>gb|AJ775830.1|AJ775830 AJ775830 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400006B01F1, mRNA sequence
Length = 593
Score = 42.1 bits (21), Expect = 0.048
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 172 cagcctcatccgcctgcacttccacgactgctt 204
|||||||||| | || |||||||||||||||||
Sbjct: 178 cagcctcatcaggctccacttccacgactgctt 210
>gb|CX656849.1|CX656849 PO02026A02 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02026A02 5', mRNA sequence
Length = 258
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 339 cctgccctggtgttgtctcctgcgctga 366
|||||||||||||||| ||||| |||||
Sbjct: 9 cctgccctggtgttgtgtcctgtgctga 36
>gb|BP923892.1|BP923892 BP923892 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-025_D02.f 5', mRNA sequence
Length = 460
Score = 40.1 bits (20), Expect = 0.19
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 339 cctgccctggtgttgtctcctgcgctgacatc 370
|||||||||||||||| ||||| ||||||||
Sbjct: 390 cctgccctggtgttgtgtcctgttctgacatc 421
>gb|AF185574.2| Populus tremuloides transcription factor MAGL4 mRNA, complete cds
Length = 1195
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 5 gaattcgcggccgcgtcgac 24
||||||||||||||||||||
Sbjct: 104 gaattcgcggccgcgtcgac 123
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 90,889
Number of Sequences: 369679
Number of extensions: 90889
Number of successful extensions: 25802
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25770
Number of HSP's gapped (non-prelim): 32
length of query: 1190
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1171
effective length of database: 196,384,763
effective search space: 229966557473
effective search space used: 229966557473
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)