BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2751069.2.1
(940 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY919617.1| Populus trichocarpa class III HD-Zip protein... 98 7e-019
gb|AY497772.1| Populus alba x Populus tremula class III HD-... 74 1e-011
gb|AY919616.1| Populus trichocarpa class III HD-Zip protein... 66 3e-009
gb|BU817633.1|BU817633 UA19CPC09 Populus tremula cambium cD... 46 0.002
gb|AY919619.1| Populus trichocarpa class III HD-Zip protein... 46 0.002
gb|AY919622.1| Populus trichocarpa class III HD-Zip protein... 44 0.010
gb|AY919618.1| Populus trichocarpa class III HD-Zip protein... 42 0.038
gb|CA929230.1|CA929230 MTU2CA.P10.H01 Aspen apex cDNA Libra... 40 0.15
gb|CA929299.1|CA929299 MTU2CA.P11.G07 Aspen apex cDNA Libra... 40 0.15
gb|CK105532.1|CK105532 UA19CPC09.5pR Populus dormant cambiu... 40 0.15
>gb|AY919617.1| Populus trichocarpa class III HD-Zip protein 2 (HB2) mRNA, complete
cds
Length = 2535
Score = 97.6 bits (49), Expect = 7e-019
Identities = 184/229 (80%)
Strand = Plus / Minus
Query: 602 gaccaaccatcatcattgaaaccactaatggcatcattaaaccccctgcttagtctttga 661
||||| ||||||||||| || ||| | ||||||||||| || || ||||||| ||||||
Sbjct: 1235 gaccagccatcatcattaaacccattgatggcatcattgaaacctctgcttaatctttgg 1176
Query: 662 ctaaaggtccgtagaactgcaggttgccttcccaaggcatacactacttctccacttgtt 721
||||||| | ||||| || |||||||| ||||| ||||||| || || ||||| |||
Sbjct: 1175 ttaaaggttctcagaacagctggttgcctgcccaaaccatacaccacctcaccactggtt 1116
Query: 722 tcttgagcaatttgtctaaggtggcgcagtgccacagtagtcattttctgagcaactact 781
|| ||||| | ||| || | | ||||||||| || | ||||||||||| || ||| ||
Sbjct: 1115 tcatgagctacttgcctgacataacgcagtgccgcaatggtcattttctgtgccactgct 1056
Query: 782 ctagaagactcatatagtggtcgaagcacttcaggaacactccatgcct 830
| || || ||||| |||||||||||||| ||||| |||||||||||||
Sbjct: 1055 tttgatgattcataaagtggtcgaagcacctcaggcacactccatgcct 1007
>gb|AY497772.1| Populus alba x Populus tremula class III HD-Zip protein (HB1) mRNA,
complete cds
Length = 2532
Score = 73.8 bits (37), Expect = 1e-011
Identities = 181/229 (79%)
Strand = Plus / Minus
Query: 602 gaccaaccatcatcattgaaaccactaatggcatcattaaaccccctgcttagtctttga 661
||||||||||||||||| || ||| | || |||||||| || || ||||||| ||||||
Sbjct: 1250 gaccaaccatcatcattaaacccattgattgcatcattgaagcctctgcttaatctttgg 1191
Query: 662 ctaaaggtccgtagaactgcaggttgccttcccaaggcatacactacttctccacttgtt 721
|||||||| | || || || || ||||| ||||| ||||||| || || ||||| |||
Sbjct: 1190 ctaaaggttctcagcacagctggctgcctgcccaaaccatacaccacctcaccactggtt 1131
Query: 722 tcttgagcaatttgtctaaggtggcgcagtgccacagtagtcattttctgagcaactact 781
|| ||||| ||||| || | |||||||| ||| | |||| |||||| || ||| ||
Sbjct: 1130 tcatgagctatttgcctgacatggcgcagcgccgtgattgtcactttctgtgccactgct 1071
Query: 782 ctagaagactcatatagtggtcgaagcacttcaggaacactccatgcct 830
| || || ||||| |||||||| ||||| ||||| |||||||||||||
Sbjct: 1070 tttgatgattcataaagtggtcgcagcacctcaggcacactccatgcct 1022
Score = 46.1 bits (23), Expect = 0.002
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 71 agtggtatgacacgaaagccagaggaaatcaatggagcatcatccggaaaatgctcatca 130
||||| |||||||| || ||||||| | || |||||||||||||||||| ||||||
Sbjct: 1781 agtggaatgacacggaaaccagagggtagcagtggagcatcatccggaaacatttcatca 1722
Query: 131 attggtgcaaa 141
||||| |||||
Sbjct: 1721 attggagcaaa 1711
>gb|AY919616.1| Populus trichocarpa class III HD-Zip protein 1 (HB1) mRNA, complete
cds
Length = 2568
Score = 65.9 bits (33), Expect = 3e-009
Identities = 180/229 (78%)
Strand = Plus / Minus
Query: 602 gaccaaccatcatcattgaaaccactaatggcatcattaaaccccctgcttagtctttga 661
||||||||||||||||| || ||| | || |||||||| || || ||||||| ||||||
Sbjct: 1250 gaccaaccatcatcattaaacccattgattgcatcattgaagcctctgcttaatctttgg 1191
Query: 662 ctaaaggtccgtagaactgcaggttgccttcccaaggcatacactacttctccacttgtt 721
|||||||| | || || || || ||||| ||||| ||||||| || || ||||| |||
Sbjct: 1190 ctaaaggttctcagcacagctggctgcctgcccaaaccatacaccacctcaccactggtt 1131
Query: 722 tcttgagcaatttgtctaaggtggcgcagtgccacagtagtcattttctgagcaactact 781
|| ||||| ||||| || | |||||||| ||| | |||| ||| || || ||| ||
Sbjct: 1130 tcatgagctatttgcctgacatggcgcagagccgtgattgtcactttttgtgccactgct 1071
Query: 782 ctagaagactcatatagtggtcgaagcacttcaggaacactccatgcct 830
| || || ||||| |||||||| ||||| ||||| |||||||||||||
Sbjct: 1070 tttgatgattcataaagtggtcgcagcacctcaggcacactccatgcct 1022
>gb|BU817633.1|BU817633 UA19CPC09 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 382
Score = 46.1 bits (23), Expect = 0.002
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 71 agtggtatgacacgaaagccagaggaaatcaatggagcatcatccggaaaatgctcatca 130
||||| |||||||| || ||||||| | || |||||||||||||||||| ||||||
Sbjct: 265 agtggaatgacacggaaaccagagggtagcagtggagcatcatccggaaacatttcatca 206
Query: 131 attggtgcaaa 141
||||| |||||
Sbjct: 205 attggagcaaa 195
>gb|AY919619.1| Populus trichocarpa class III HD-Zip protein 4 (HB4) mRNA, complete
cds
Length = 2535
Score = 46.1 bits (23), Expect = 0.002
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 602 gaccaaccatcatcattgaaaccactaatggcatcattaaaccccctgcttagtctttga 661
|||||||||||||| |||| ||| | | |||||||| |||||||||| || || |||
Sbjct: 1250 gaccaaccatcatctgtgaacccattcacagcatcattgaaccccctgcagagcctctga 1191
Query: 662 ctaaaggtccgtagaactgcagg 684
||||| |||| |||||| |||||
Sbjct: 1190 ctaaatgtccttagaacagcagg 1168
Score = 42.1 bits (21), Expect = 0.038
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 74 ggtatgacacgaaagccagaggaaatcaatggagcatcatc 114
|||||||||||||| ||||| || | |||||| ||||||||
Sbjct: 1784 ggtatgacacgaaatccagatgacagcaatggtgcatcatc 1744
Score = 42.1 bits (21), Expect = 0.038
Identities = 90/113 (79%)
Strand = Plus / Minus
Query: 713 ccacttgtttcttgagcaatttgtctaaggtggcgcagtgccacagtagtcattttctga 772
||||| || ||||||||||||||||| | ||| |||| ||| | | ||||||||||||
Sbjct: 1139 ccactagtctcttgagcaatttgtcttatgtgccgcaaggccgccatggtcattttctga 1080
Query: 773 gcaactactctagaagactcatatagtggtcgaagcacttcaggaacactcca 825
|||| | | | || || ||||| ||||| | || |||||||||||||||||
Sbjct: 1079 gcaagaattttggatgattcataaagtggcctcagaacttcaggaacactcca 1027
>gb|AY919622.1| Populus trichocarpa class III HD-Zip protein 7 (HB7) mRNA, complete
cds
Length = 2472
Score = 44.1 bits (22), Expect = 0.010
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 788 gactcatatagtggtcgaagcacttcaggaacactcca 825
|||||||| ||||| || | ||||||||||||||||||
Sbjct: 1019 gactcataaagtgggcgcaacacttcaggaacactcca 982
>gb|AY919618.1| Populus trichocarpa class III HD-Zip protein 3 (HB3) mRNA, complete
cds
Length = 2532
Score = 42.1 bits (21), Expect = 0.038
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 761 gtcattttctgagcaactactctagaagactcatatagtggtcgaagcacttcaggaaca 820
|||||||||||||||| | | | || |||||||| ||||| | || ||||||||||||
Sbjct: 1091 gtcattttctgagcaagaattttggatgactcataaagtggcctcagaacttcaggaaca 1032
Query: 821 ctcca 825
|||||
Sbjct: 1031 ctcca 1027
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 462 tctgcagtaacatggatgccttcgcaca 489
||||||| ||||| ||||||||||||||
Sbjct: 1393 tctgcagcaacattgatgccttcgcaca 1366
>gb|CA929230.1|CA929230 MTU2CA.P10.H01 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 637
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 462 tctgcagtaacatggatgccttcgcaca 489
||||||| ||||| ||||||||||||||
Sbjct: 283 tctgcagcaacattgatgccttcgcaca 256
>gb|CA929299.1|CA929299 MTU2CA.P11.G07 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 640
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 462 tctgcagtaacatggatgccttcgcaca 489
||||||| ||||| ||||||||||||||
Sbjct: 286 tctgcagcaacattgatgccttcgcaca 259
>gb|CK105532.1|CK105532 UA19CPC09.5pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA19CPC09 5', mRNA sequence
Length = 444
Score = 40.1 bits (20), Expect = 0.15
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 86 aagccagaggaaatcaatggagcatcatccggaaaatgctcatcaattggtgcaaa 141
|||||||||| | || |||||||||||||||||| ||||||||||| |||||
Sbjct: 213 aagccagagggtagcagtggagcatcatccggaaacatttcatcaattggagcaaa 158
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 116,853
Number of Sequences: 369679
Number of extensions: 116853
Number of successful extensions: 30983
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 30937
Number of HSP's gapped (non-prelim): 37
length of query: 940
length of database: 203,408,664
effective HSP length: 19
effective length of query: 921
effective length of database: 196,384,763
effective search space: 180870366723
effective search space used: 180870366723
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)