BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750951.2.1
(1014 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK090161.1|CK090161 C071P68.3pR Populus strain T89 leave... 58 7e-007
gb|CV276813.1|CV276813 WS0141.B21_N18 PTxD-IL-A-5 Populus t... 58 7e-007
gb|AY515151.1| Populus deltoides CONSTANS-like protein CO2 ... 58 7e-007
gb|BP935211.1|BP935211 BP935211 full-length enriched poplar... 50 2e-004
gb|AJ780861.1|AJ780861 AJ780861 Populus euphratica leaf 3-6... 44 0.010
gb|CV237898.1|CV237898 WS0124.B21_I04 PT-GT-FL-A-3 Populus ... 44 0.010
gb|CV245101.1|CV245101 WS0256.B21_H19 PT-MB-N-A-15 Populus ... 44 0.010
gb|CV263006.1|CV263006 WS02020.B21_B13 PTxN-IB-N-A-11 Popul... 44 0.010
gb|CV266445.1|CV266445 WS0203.B21_A18 PTxN-IB-N-A-11 Populu... 44 0.010
gb|CV278017.1|CV278017 WS0145.B21_D11 PTxD-IL-A-5 Populus t... 44 0.010
gb|CX654585.1|CX654585 PO02016G03 Poplar SC cDNA library Po... 44 0.010
gb|BP929734.1|BP929734 BP929734 full-length enriched poplar... 44 0.010
gb|BP932684.1|BP932684 BP932684 full-length enriched poplar... 44 0.010
gb|DT504160.1|DT504160 WS01312.B21_D24 PTxD-IL-FL-A-4 Popul... 44 0.010
gb|DT515281.1|DT515281 WS02427.B21_C08 PTxD-ICC-N-A-14 Popu... 44 0.010
gb|AY515150.1| Populus deltoides CONSTANS-like protein CO1 ... 44 0.010
gb|DT510644.1|DT510644 WS02427.BR_C08 PTxD-ICC-N-A-14 Popul... 42 0.041
gb|AJ777907.1|AJ777907 AJ777907 Populus euphratica root 3-6... 40 0.16
gb|BP935635.1|BP935635 BP935635 full-length enriched poplar... 40 0.16
>gb|CK090161.1|CK090161 C071P68.3pR Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA clone C071P68 3', mRNA sequence
Length = 672
Score = 58.0 bits (29), Expect = 7e-007
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
||||| |||||||| || || ||||| ||||| ||||| ||||||| ||||||||||||
Sbjct: 417 atggatagggaggcaagagtcctgagatacagagagaaaaagaagacaaggaagtttgag 358
Query: 323 aagac 327
|||||
Sbjct: 357 aagac 353
>gb|CV276813.1|CV276813 WS0141.B21_N18 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0141_N18 3', mRNA sequence
Length = 802
Score = 58.0 bits (29), Expect = 7e-007
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
||||| |||||||| || || ||||| ||||| ||||| ||||||| ||||||||||||
Sbjct: 363 atggatagggaggcaagagtcctgagatacagagagaaaaagaagacaaggaagtttgag 304
Query: 323 aagac 327
|||||
Sbjct: 303 aagac 299
>gb|AY515151.1| Populus deltoides CONSTANS-like protein CO2 mRNA, complete cds
Length = 1370
Score = 58.0 bits (29), Expect = 7e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
||||| |||||||| || || ||||| ||||| ||||| ||||||| ||||||||||||
Sbjct: 1004 atggatagggaggcaagagtcctgagatacagagagaaaaagaagacaaggaagtttgag 1063
Query: 323 aagac 327
|||||
Sbjct: 1064 aagac 1068
>gb|BP935211.1|BP935211 BP935211 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-075_C13.r 3', mRNA sequence
Length = 592
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
||||| |||||||| || || ||||| ||||| ||||| | ||||| ||||||||||||
Sbjct: 482 atggatagggaggcaagagtcctgagatacagagagaaaaggaagacgaggaagtttgag 423
Query: 323 aagac 327
|||||
Sbjct: 422 aagac 418
>gb|AJ780861.1|AJ780861 AJ780861 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0000900014D01F1, mRNA sequence
Length = 648
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 410 gatgtcgaagtggatcagatgttctc 435
|||||||||||||| |||||||||||
Sbjct: 507 gatgtcgaagtggaccagatgttctc 532
Score = 42.1 bits (21), Expect = 0.041
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
||||| |||||||| || || || || ||||| ||||| |||||| ||||||||||||
Sbjct: 363 atggaaagggaggcaagagtcctaagatacagagagaaaaagaaggcaaggaagtttgag 422
Query: 323 aagac 327
|||||
Sbjct: 423 aagac 427
>gb|CV237898.1|CV237898 WS0124.B21_I04 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0124_I04 3', mRNA sequence
Length = 665
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 410 gatgtcgaagtggatcagatgttctc 435
|||||||||||||| |||||||||||
Sbjct: 107 gatgtcgaagtggaccagatgttctc 82
Score = 42.1 bits (21), Expect = 0.041
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
||||| |||||||| || || || || ||||| ||||| |||||| ||||||||||||
Sbjct: 251 atggaaagggaggcaagagtcctaagatacagagagaaaaagaaggcaaggaagtttgag 192
Query: 323 aagac 327
|||||
Sbjct: 191 aagac 187
>gb|CV245101.1|CV245101 WS0256.B21_H19 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0256_H19 3', mRNA sequence
Length = 789
Score = 44.1 bits (22), Expect = 0.010
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 295 ggagaagaagaagagcaggaag 316
||||||||||||||||||||||
Sbjct: 727 ggagaagaagaagagcaggaag 706
>gb|CV263006.1|CV263006 WS02020.B21_B13 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02020_B13 3', mRNA sequence
Length = 393
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 410 gatgtcgaagtggatcagatgttctc 435
|||||||||||||| |||||||||||
Sbjct: 259 gatgtcgaagtggaccagatgttctc 234
>gb|CV266445.1|CV266445 WS0203.B21_A18 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0203_A18 3', mRNA sequence
Length = 761
Score = 44.1 bits (22), Expect = 0.010
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 295 ggagaagaagaagagcaggaag 316
||||||||||||||||||||||
Sbjct: 684 ggagaagaagaagagcaggaag 663
>gb|CV278017.1|CV278017 WS0145.B21_D11 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0145_D11 3', mRNA sequence
Length = 336
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 410 gatgtcgaagtggatcagatgttctc 435
|||||||||||||| |||||||||||
Sbjct: 202 gatgtcgaagtggaccagatgttctc 177
>gb|CX654585.1|CX654585 PO02016G03 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02016G03 5', mRNA sequence
Length = 476
Score = 44.1 bits (22), Expect = 0.010
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 644 ctttacgcgatcgccgtaggtcttaaaacagaagtcagcata 685
|||||| ||||| || ||||||||||||||||||| |||||
Sbjct: 118 ctttactcgatctccaaaggtcttaaaacagaagtctgcata 77
>gb|BP929734.1|BP929734 BP929734 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-001_G02.r 3', mRNA sequence
Length = 549
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 410 gatgtcgaagtggatcagatgttctc 435
|||||||||||||| |||||||||||
Sbjct: 318 gatgtcgaagtggaccagatgttctc 293
Score = 42.1 bits (21), Expect = 0.041
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
||||| |||||||| || || || || ||||| ||||| |||||| ||||||||||||
Sbjct: 462 atggaaagggaggcaagagtcctaagatacagagagaaaaagaaggcaaggaagtttgag 403
Query: 323 aagac 327
|||||
Sbjct: 402 aagac 398
>gb|BP932684.1|BP932684 BP932684 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-039_G05.r 3', mRNA sequence
Length = 660
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 410 gatgtcgaagtggatcagatgttctc 435
|||||||||||||| |||||||||||
Sbjct: 320 gatgtcgaagtggaccagatgttctc 295
Score = 42.1 bits (21), Expect = 0.041
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
||||| |||||||| || || || || ||||| ||||| |||||| ||||||||||||
Sbjct: 464 atggaaagggaggcaagagtcctaagatacagagagaaaaagaaggcaaggaagtttgag 405
Query: 323 aagac 327
|||||
Sbjct: 404 aagac 400
>gb|DT504160.1|DT504160 WS01312.B21_D24 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01312_D24 3', mRNA sequence
Length = 842
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 410 gatgtcgaagtggatcagatgttctc 435
|||||||||||||| |||||||||||
Sbjct: 237 gatgtcgaagtggaccagatgttctc 212
Score = 42.1 bits (21), Expect = 0.041
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
||||| |||||||| || || || || ||||| ||||| |||||| ||||||||||||
Sbjct: 381 atggaaagggaggcaagagtcctaagatacagagagaaaaagaaggcgaggaagtttgag 322
Query: 323 aagac 327
|||||
Sbjct: 321 aagac 317
>gb|DT515281.1|DT515281 WS02427.B21_C08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02427_C08 3', mRNA sequence
Length = 816
Score = 44.1 bits (22), Expect = 0.010
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 732 ttcttctcaagcgcaagaggaagatcatagtggtaaag 769
||||||||||| || || |||||||||||||| |||||
Sbjct: 291 ttcttctcaagtgctagcggaagatcatagtgataaag 328
Score = 44.1 bits (22), Expect = 0.010
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 644 ctttacgcgatcgccgtaggtcttaaaacagaagtcagcata 685
|||||| ||||| || ||||||||||||||||||| |||||
Sbjct: 203 ctttactcgatctccaaaggtcttaaaacagaagtctgcata 244
>gb|AY515150.1| Populus deltoides CONSTANS-like protein CO1 mRNA, complete cds
Length = 1467
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 410 gatgtcgaagtggatcagatgttctc 435
|||||||||||||| |||||||||||
Sbjct: 1236 gatgtcgaagtggaccagatgttctc 1261
Score = 42.1 bits (21), Expect = 0.041
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
||||| |||||||| || || || || ||||| ||||| |||||| ||||||||||||
Sbjct: 1092 atggaaagggaggcaagagtcctaagatacagagagaaaaagaaggcgaggaagtttgag 1151
Query: 323 aagac 327
|||||
Sbjct: 1152 aagac 1156
>gb|DT510644.1|DT510644 WS02427.BR_C08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02427_C08 5', mRNA sequence
Length = 559
Score = 42.1 bits (21), Expect = 0.041
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 733 tcttctcaagcgcaagaggaagatcatagtggtaaag 769
|||||||||| || || |||||||||||||| |||||
Sbjct: 559 tcttctcaagtgctagcggaagatcatagtgataaag 523
>gb|AJ777907.1|AJ777907 AJ777907 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400036G11F1, mRNA sequence
Length = 625
Score = 40.1 bits (20), Expect = 0.16
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 312 ggaagtttgagaagaccatacggtatgc 339
||||||| || |||||||||||||||||
Sbjct: 368 ggaagttcgaaaagaccatacggtatgc 395
>gb|BP935635.1|BP935635 BP935635 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-079_C16.r 3', mRNA sequence
Length = 371
Score = 40.1 bits (20), Expect = 0.16
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 284 ctgaggtacagggagaagaagaagagcaggaagtttgagaagac 327
||||| ||||| ||||| | ||||| |||||||||||||||||
Sbjct: 370 ctgagatacagagagaaaaggaagacgaggaagtttgagaagac 327
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 111,632
Number of Sequences: 369679
Number of extensions: 111632
Number of successful extensions: 37288
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 37255
Number of HSP's gapped (non-prelim): 34
length of query: 1014
length of database: 203,408,664
effective HSP length: 19
effective length of query: 995
effective length of database: 196,384,763
effective search space: 195402839185
effective search space used: 195402839185
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)