BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750929.2.1
(583 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU867394.1|BU867394 S077F10 Populus imbibed seed cDNA li... 68 4e-010
gb|AY675562.1| Populus tomentosa myb family transcription f... 68 4e-010
gb|BU824003.1|BU824003 UB59CPB06 Populus tremula cambium cD... 60 1e-007
gb|BU897999.1|BU897999 X073C03 Populus wood cDNA library Po... 40 0.091
gb|CK093118.1|CK093118 G108P48.3pR Populus tension wood cDN... 40 0.091
gb|BU821238.1|BU821238 UB20CPH01 Populus tremula cambium cD... 38 0.36
gb|CK087258.1|CK087258 A001P57.3pR Hybrid aspen plasmid lib... 38 0.36
gb|CK106440.1|CK106440 UB20CPH01.5pR Populus active cambium... 38 0.36
gb|CX659535.1|CX659535 PO01031H03 Poplar SC cDNA library Po... 38 0.36
gb|DT474465.1|DT474465 WS01231.BR_P24 PT-GT-FL-A-3 Populus ... 38 0.36
>gb|BU867394.1|BU867394 S077F10 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 719
Score = 67.9 bits (34), Expect = 4e-010
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 492 tcagctcggaggcccagacaaggccacgccgaaaaccatcatgaggctcatggg 545
|||||| |||||||||||||||||||| || |||||||||||||| |||||||
Sbjct: 279 tcagcttggaggcccagacaaggccactcccaaaaccatcatgagagtcatggg 332
>gb|AY675562.1| Populus tomentosa myb family transcription factor-related protein
mRNA, complete cds
Length = 1104
Score = 67.9 bits (34), Expect = 4e-010
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 492 tcagctcggaggcccagacaaggccacgccgaaaaccatcatgaggctcatggg 545
|||||| |||||||||||||||||||| || |||||||||||||| |||||||
Sbjct: 150 tcagcttggaggcccagacaaggccactcccaaaaccatcatgagagtcatggg 203
>gb|BU824003.1|BU824003 UB59CPB06 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 427
Score = 60.0 bits (30), Expect = 1e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 492 tcagctcggaggcccagacaaggccacgccgaaaaccatcatgaggctcatggg 545
|||||| |||||||| ||||||||||| || |||||||||||||| |||||||
Sbjct: 147 tcagcttggaggccctgacaaggccactccaaaaaccatcatgagagtcatggg 200
>gb|BU897999.1|BU897999 X073C03 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 626
Score = 40.1 bits (20), Expect = 0.091
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 tctcactcactcactcactc 93
||||||||||||||||||||
Sbjct: 71 tctcactcactcactcactc 90
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 76 ctcactcactcactcactc 94
>gb|CK093118.1|CK093118 G108P48.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G108P48 3', mRNA sequence
Length = 734
Score = 40.1 bits (20), Expect = 0.091
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 71 ctgtctcactcactcactca 90
||||||||||||||||||||
Sbjct: 181 ctgtctcactcactcactca 162
>gb|BU821238.1|BU821238 UB20CPH01 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 214
Score = 38.2 bits (19), Expect = 0.36
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 499 ggaggcccagacaaggccacgcc 521
||||| |||||||||||||||||
Sbjct: 171 ggaggaccagacaaggccacgcc 193
>gb|CK087258.1|CK087258 A001P57.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A001P57 3', mRNA sequence
Length = 729
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 176 ctcactcactcactcactc 194
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 172 ctcactcactcactcactc 190
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 168 ctcactcactcactcactc 186
>gb|CK106440.1|CK106440 UB20CPH01.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB20CPH01 5', mRNA sequence
Length = 451
Score = 38.2 bits (19), Expect = 0.36
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 499 ggaggcccagacaaggccacgcc 521
||||| |||||||||||||||||
Sbjct: 196 ggaggaccagacaaggccacgcc 218
>gb|CX659535.1|CX659535 PO01031H03 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01031H03 5', mRNA sequence
Length = 631
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 97 ctcactcactcactcactc 79
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 93 ctcactcactcactcactc 75
>gb|DT474465.1|DT474465 WS01231.BR_P24 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01231_P24 5', mRNA sequence
Length = 870
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 75 ctcactcactcactcactc 93
|||||||||||||||||||
Sbjct: 85 ctcactcactcactcactc 67
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 69,149
Number of Sequences: 369679
Number of extensions: 69149
Number of successful extensions: 19077
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19048
Number of HSP's gapped (non-prelim): 20
length of query: 583
length of database: 203,408,664
effective HSP length: 19
effective length of query: 564
effective length of database: 196,384,763
effective search space: 110761006332
effective search space used: 110761006332
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)