BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750698.2.1
(1126 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC149545.1| Populus trichocarpa clone Pop1-71J23, comple... 115 4e-024
gb|DN491629.1|DN491629 V008H01.3pR Populus male catkins cDN... 68 8e-010
gb|AJ776798.1|AJ776798 AJ776798 Populus euphratica root 3-6... 48 7e-004
gb|AC149542.1| Populus trichocarpa clone Pop1-2C5, complete... 40 0.18
>gb|AC149545.1| Populus trichocarpa clone Pop1-71J23, complete sequence
Length = 103543
Score = 115 bits (58), Expect = 4e-024
Identities = 94/106 (88%)
Strand = Plus / Minus
Query: 341 agacatttggacctattataccaatcatgaaattcagttctgatgaagaggctatcaaac 400
|||| |||||||| ||||| || || |||||||| ||| |||||||||||||| ||||||
Sbjct: 70298 agacttttggaccaattatgccgataatgaaatttagtactgatgaagaggctgtcaaac 70239
Query: 401 ttgcaaacgactcaaaatatggtcttggctgtgctgttttttcggg 446
||||||| ||||||| |||||| |||||||| ||||||||||||||
Sbjct: 70238 ttgcaaatgactcaagatatgggcttggctgcgctgttttttcggg 70193
Score = 95.6 bits (48), Expect = 4e-018
Identities = 117/140 (83%)
Strand = Plus / Minus
Query: 539 tgccattcggtggtgttaaagacagcggattcgggagatttgctggcgtagaaggcttgc 598
||||||| |||||||| || |||| ||||| || ||||||||||| || ||||| ||||
Sbjct: 69667 tgccatttggtggtgtgaagcacagtggatttggcagatttgctggtgtggaaggattgc 69608
Query: 599 gagcttgctgccttgtgaagtctgttgtagaagatagattgtggccatatattagaacag 658
| |||||||| |||||||| || ||||| |||||||| ||||||||||| |||| |||
Sbjct: 69607 gggcttgctgtcttgtgaaatcagttgtggaagataggttgtggccatacattaaaacca 69548
Query: 659 tgatcccgaagcctatccag 678
||| || ||||||||||||
Sbjct: 69547 agataccaaagcctatccag 69528
Score = 56.0 bits (28), Expect = 3e-006
Identities = 79/96 (82%)
Strand = Plus / Minus
Query: 247 agttttggcaatcttggggaagatgcagttgatcaatttttcccaccaactggcctggtg 306
||||||||| |||| || |||| |||||||||||| || | ||| || || | || ||
Sbjct: 70715 agttttggccatctgggtgaaggtgcagttgatcagttctaccctcccaccgtgcttgta 70656
Query: 307 aatgttgatcacacaatgaaaattatgcaagaagag 342
|||||||| |||||||||||| | ||||||||||||
Sbjct: 70655 aatgttgaccacacaatgaaactgatgcaagaagag 70620
Score = 48.1 bits (24), Expect = 7e-004
Identities = 60/72 (83%)
Strand = Plus / Minus
Query: 10 gctgctctgcaatctagtgggcagaattgcgctggtgctgaaagattttatgttcacgat 69
|||| ||| ||||| |||||||||||||| ||||| ||||| || || ||||||||
Sbjct: 71228 gctgttcttcaatcaagtgggcagaattgtgctggggctgagaggttctatgttcatagg 71169
Query: 70 gacatctattct 81
||||||||||||
Sbjct: 71168 gacatctattct 71157
>gb|DN491629.1|DN491629 V008H01.3pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V008H01 3', mRNA sequence
Length = 267
Score = 67.9 bits (34), Expect = 8e-010
Identities = 79/94 (84%)
Strand = Plus / Minus
Query: 590 aaggcttgcgagcttgctgccttgtgaagtctgttgtagaagatagattgtggccatata 649
|||| ||||| |||||||| |||||||| || ||||| |||||||| ||||| ||||| |
Sbjct: 224 aaggattgcgggcttgctgtcttgtgaaatcagttgtggaagataggttgtgcccataca 165
Query: 650 ttagaacagtgatcccgaagcctatccagtatcc 683
||| ||| ||| || |||||||||||||||||
Sbjct: 164 ttaaaaccaagatacctaagcctatccagtatcc 131
>gb|AJ776798.1|AJ776798 AJ776798 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400018F06F1, mRNA sequence
Length = 463
Score = 48.1 bits (24), Expect = 7e-004
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 10 gctgctctgcaatctagtgggcagaattgcgctggtgctgaaagattttatgttcacgat 69
|||| ||| ||||| |||||||||||||| ||||| ||||| || || ||||||||
Sbjct: 258 gctgttcttcaatcaagtgggcagaattgtgctggggctgagaggttctatgttcatagg 317
Query: 70 gacatctattct 81
||||||||||||
Sbjct: 318 gacatctattct 329
>gb|AC149542.1| Populus trichocarpa clone Pop1-2C5, complete sequence
Length = 146274
Score = 40.1 bits (20), Expect = 0.18
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 695 atggatttgagttccagcagttgcttgtggagactctgtatggc 738
|||| |||||||||||||||| |||||||| |||| ||||||
Sbjct: 52792 atggctttgagttccagcagtctcttgtggaagctctctatggc 52835
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 126,195
Number of Sequences: 369679
Number of extensions: 126195
Number of successful extensions: 31976
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31922
Number of HSP's gapped (non-prelim): 53
length of query: 1126
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1107
effective length of database: 196,384,763
effective search space: 217397932641
effective search space used: 217397932641
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)