BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750463.2.1
(678 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU866707.1|BU866707 S069H02 Populus imbibed seed cDNA li... 58 5e-007
gb|BU866897.1|BU866897 S072A05 Populus imbibed seed cDNA li... 58 5e-007
gb|CF236318.1|CF236318 PtaJXT11D12D1208 Poplar cDNA library... 58 5e-007
gb|BU862485.1|BU862485 S016C11 Populus imbibed seed cDNA li... 56 2e-006
gb|DN488621.1|DN488621 S016C11.3pR Populus imbibed seed cDN... 56 2e-006
gb|DN498314.1|DN498314 S016C11.5pR Populus imbibed seed cDN... 56 2e-006
gb|CF232862.1|CF232862 PtaJXO0016F8F0812 Poplar cDNA librar... 52 3e-005
gb|CF233657.1|CF233657 PtaJXO0026B3B0303 Poplar cDNA librar... 52 3e-005
gb|DT522694.1|DT522694 WS02037.B21_L04 PTxN-IB-N-A-11 Popul... 52 3e-005
gb|CV236471.1|CV236471 WS01224.B21.1_D19 PT-GT-FL-A-3 Popul... 50 1e-004
gb|CV257020.1|CV257020 WS0245.B21_G24 PTxD-ICC-N-A-14 Popul... 50 1e-004
gb|CV261338.1|CV261338 WS02016.B21_I04 PTxN-IB-N-A-11 Popul... 50 1e-004
gb|DT509897.1|DT509897 WS02425.BR_A16 PTxD-ICC-N-A-14 Popul... 50 1e-004
gb|DT509990.1|DT509990 WS02425.BR_E18 PTxD-ICC-N-A-14 Popul... 50 1e-004
gb|DT514611.1|DT514611 WS02425.B21_E18 PTxD-ICC-N-A-14 Popu... 50 1e-004
gb|BI071607.1|BI071607 C060P75U Populus strain T89 leaves P... 46 0.002
gb|BU808987.1|BU808987 UL52PD01 Populus leaf cDNA library P... 46 0.002
gb|BU811066.1|BU811066 UL79TE09 Populus leaf cDNA library P... 46 0.002
gb|BU812392.1|BU812392 UL95TG07 Populus leaf cDNA library P... 46 0.002
gb|BU812637.1|BU812637 UL98TG02 Populus leaf cDNA library P... 46 0.002
gb|BU817238.1|BU817238 UA14CPE11 Populus tremula cambium cD... 46 0.002
gb|BU817498.1|BU817498 UA17CPF12 Populus tremula cambium cD... 46 0.002
gb|BU829855.1|BU829855 K068P91P Populus apical shoot cDNA l... 46 0.002
gb|BU829974.1|BU829974 T002D07 Populus apical shoot cDNA li... 46 0.002
gb|BU862300.1|BU862300 S013H07 Populus imbibed seed cDNA li... 46 0.002
gb|BU864592.1|BU864592 S042E06 Populus imbibed seed cDNA li... 46 0.002
gb|BU864803.1|BU864803 S045B03 Populus imbibed seed cDNA li... 46 0.002
gb|BU865284.1|BU865284 S051E06 Populus imbibed seed cDNA li... 46 0.002
gb|BU866197.1|BU866197 S063H03 Populus imbibed seed cDNA li... 46 0.002
gb|BU866977.1|BU866977 S072H08 Populus imbibed seed cDNA li... 46 0.002
gb|BU867001.1|BU867001 S073B10 Populus imbibed seed cDNA li... 46 0.002
gb|BU878471.1|BU878471 V047G03 Populus flower cDNA library ... 46 0.002
gb|BU884356.1|BU884356 R009E11 Populus root cDNA library Po... 46 0.002
gb|BU885695.1|BU885695 R034G07 Populus root cDNA library Po... 46 0.002
gb|BU885722.1|BU885722 R035C01 Populus root cDNA library Po... 46 0.002
gb|BU887876.1|BU887876 R068E12 Populus root cDNA library Po... 46 0.002
gb|BU888042.1|BU888042 P002H09 Populus petioles cDNA librar... 46 0.002
gb|BU893215.1|BU893215 P074G09 Populus petioles cDNA librar... 46 0.002
gb|CA927406.1|CA927406 MTU6CR.P8.F04 Aspen root cDNA Librar... 46 0.002
gb|CF231175.1|CF231175 PtaC0018C7C0705 Poplar cDNA library ... 46 0.002
gb|CF232558.1|CF232558 PtaJXO0011H4H0416 Poplar cDNA librar... 46 0.002
gb|CK105510.1|CK105510 UA17CPF12.5pR Populus dormant cambiu... 46 0.002
gb|CN520892.1|CN520892 GQ0107.B3_B21 GQ010 Populus trichoca... 46 0.002
gb|CN523304.1|CN523304 GQ015M01.B3_L01 GQ015 Populus tricho... 46 0.002
gb|CN549971.1|CN549971 GQ0243.B3_C07 GQ024 Populus trichoca... 46 0.002
gb|CV236170.1|CV236170 WS01223.B21_B16 PT-GT-FL-A-3 Populus... 46 0.002
gb|CV237332.1|CV237332 WS01227.B21.1_I01 PT-GT-FL-A-3 Popul... 46 0.002
gb|CV270106.1|CV270106 WS0151.B21_B16 PTxN-IB-A-6 Populus t... 46 0.002
gb|CX653969.1|CX653969 PO02011A02 Poplar SC cDNA library Po... 46 0.002
gb|CX655073.1|CX655073 PO01004E04 Poplar SC cDNA library Po... 46 0.002
gb|CX659340.1|CX659340 PO01029E03 Poplar SC cDNA library Po... 46 0.002
gb|BP926448.1|BP926448 BP926448 full-length enriched poplar... 46 0.002
gb|BP928728.1|BP928728 BP928728 full-length enriched poplar... 46 0.002
gb|DN492113.1|DN492113 V047G03.3pR Populus male catkins cDN... 46 0.002
gb|DN502055.1|DN502055 V047G03.5pR Populus male catkins cDN... 46 0.002
gb|DT472846.1|DT472846 WS01227.BR_I01 PT-GT-FL-A-3 Populus ... 46 0.002
gb|DT479295.1|DT479295 WS02525.BR_G07 PT-MB-N-A-15 Populus ... 46 0.002
gb|DT495090.1|DT495090 WS0112.BR_F17 PT-P-FL-A-2 Populus tr... 46 0.002
gb|DT508868.1|DT508868 WS02422.BR_C14 PTxD-ICC-N-A-14 Popul... 46 0.002
gb|DT513477.1|DT513477 WS02422.B21_C14 PTxD-ICC-N-A-14 Popu... 46 0.002
gb|DV466514.1|DV466514 MTUNUL1.P6.F09 NUL Populus fremontii... 46 0.002
gb|BU826636.1|BU826636 UK122TH12 Populus apical shoot cDNA ... 44 0.007
gb|BU832161.1|BU832161 T030B03 Populus apical shoot cDNA li... 44 0.007
gb|BU864521.1|BU864521 S041F03 Populus imbibed seed cDNA li... 44 0.007
gb|CA825104.1|CA825104 R53F01 two-month-old roots from clon... 44 0.007
gb|DT517604.1|DT517604 WS02434.B21_M13 PTxD-ICC-N-A-14 Popu... 44 0.007
gb|CV256088.1|CV256088 WS0242.B21_O11 PTxD-ICC-N-A-14 Popul... 42 0.027
gb|BU810918.1|BU810918 UL77PG05 Populus leaf cDNA library P... 40 0.11
gb|CK113298.1|CK113298 UR105TE09 Populus root cDNA library ... 40 0.11
gb|CV258272.1|CV258272 WS0249.B21_A23 PTxD-ICC-N-A-14 Popul... 40 0.11
gb|CV265667.1|CV265667 WS02027.B21_O12 PTxN-IB-N-A-11 Popul... 40 0.11
gb|DN483689.1|DN483689 PSO202A11 Populus tomentiglandulosa ... 40 0.11
gb|BU817220.1|BU817220 UA14CPD02 Populus tremula cambium cD... 38 0.42
gb|BU866879.1|BU866879 S071G09 Populus imbibed seed cDNA li... 38 0.42
gb|BU884092.1|BU884092 R005F08 Populus root cDNA library Po... 38 0.42
>gb|BU866707.1|BU866707 S069H02 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 725
Score = 58.0 bits (29), Expect = 5e-007
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 514 cctctggttcgaccctaccactgccttccacacctactccatcctgtggaacccgca 570
||||||||| || || || |||| |||||||||||||||||||| |||||||||||
Sbjct: 471 cctctggtttgatccgactactgatttccacacctactccatcctttggaacccgca 527
>gb|BU866897.1|BU866897 S072A05 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 650
Score = 58.0 bits (29), Expect = 5e-007
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 514 cctctggttcgaccctaccactgccttccacacctactccatcctgtggaacccgca 570
||||||||| || || || |||| |||||||||||||||||||| |||||||||||
Sbjct: 472 cctctggtttgatccgactactgatttccacacctactccatcctttggaacccgca 528
>gb|CF236318.1|CF236318 PtaJXT11D12D1208 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 768
Score = 58.0 bits (29), Expect = 5e-007
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 514 cctctggttcgaccctaccactgccttccacacctactccatcctgtggaacccgca 570
||||||||| || || || |||| |||||||||||||||||||| |||||||||||
Sbjct: 473 cctctggtttgatccaactactgatttccacacctactccatcctttggaacccgca 529
>gb|BU862485.1|BU862485 S016C11 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 645
Score = 56.0 bits (28), Expect = 2e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 539 ttccacacctactccatcctgtggaacccgca 570
|||||||||||||||||||| |||||||||||
Sbjct: 491 ttccacacctactccatcctttggaacccgca 522
>gb|DN488621.1|DN488621 S016C11.3pR Populus imbibed seed cDNA library Populus tremula cDNA
clone S016C11 3', mRNA sequence
Length = 820
Score = 56.0 bits (28), Expect = 2e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 539 ttccacacctactccatcctgtggaacccgca 570
|||||||||||||||||||| |||||||||||
Sbjct: 589 ttccacacctactccatcctttggaacccgca 558
>gb|DN498314.1|DN498314 S016C11.5pR Populus imbibed seed cDNA library Populus tremula cDNA
clone S016C11 5', mRNA sequence
Length = 863
Score = 56.0 bits (28), Expect = 2e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 539 ttccacacctactccatcctgtggaacccgca 570
|||||||||||||||||||| |||||||||||
Sbjct: 489 ttccacacctactccatcctttggaacccgca 520
>gb|CF232862.1|CF232862 PtaJXO0016F8F0812 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 765
Score = 52.0 bits (26), Expect = 3e-005
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 514 cctctggttcgaccctaccactgccttccacacctactccatcctgtggaaccc 567
||||||||| || || || |||| |||||||||||||||||||| ||||||||
Sbjct: 470 cctctggtttgatccaactactgatttccacacctactccatcctttggaaccc 523
>gb|CF233657.1|CF233657 PtaJXO0026B3B0303 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 664
Score = 52.0 bits (26), Expect = 3e-005
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 514 cctctggttcgaccctaccactgccttccacacctactccatcctgtggaaccc 567
||||||||| || || || |||| |||||||||||||||||||| ||||||||
Sbjct: 471 cctctggtttgatccaactactgatttccacacctactccatcctttggaaccc 524
>gb|DT522694.1|DT522694 WS02037.B21_L04 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02037_L04 3', mRNA sequence
Length = 796
Score = 52.0 bits (26), Expect = 3e-005
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 514 cctctggttcgaccctaccactgccttccacacctactccatcctgtggaaccc 567
||||||||| || || || |||| |||||||||||||||||||| ||||||||
Sbjct: 670 cctctggtttgatccaactactgatttccacacctactccatcctctggaaccc 617
>gb|CV236471.1|CV236471 WS01224.B21.1_D19 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01224_D19 3', mRNA sequence
Length = 915
Score = 50.1 bits (25), Expect = 1e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 326 atcgacatgcagatcaagctggtgccaggcaactccgctggcacggtcaccac 378
||||||||||| |||||||| || | |||||||| |||||||| ||||||||
Sbjct: 789 atcgacatgcaaatcaagctagtatcgggcaactcggctggcactgtcaccac 737
>gb|CV257020.1|CV257020 WS0245.B21_G24 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0245_G24 3', mRNA sequence
Length = 800
Score = 50.1 bits (25), Expect = 1e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 326 atcgacatgcagatcaagctggtgccaggcaactccgctggcacggtcaccac 378
||||||||||| |||||||| || | |||||||| |||||||| ||||||||
Sbjct: 767 atcgacatgcaaatcaagctagtatcgggcaactcggctggcactgtcaccac 715
Score = 40.1 bits (20), Expect = 0.11
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 407 cacgacgagatcgacttcgagttcctgggcaa 438
||||||||||| ||||||||||| || |||||
Sbjct: 687 cacgacgagattgacttcgagtttctaggcaa 656
>gb|CV261338.1|CV261338 WS02016.B21_I04 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02016_I04 3', mRNA sequence
Length = 826
Score = 50.1 bits (25), Expect = 1e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 326 atcgacatgcagatcaagctggtgccaggcaactccgctggcacggtcaccac 378
||||||||||| |||||||| || | |||||||| |||||||| ||||||||
Sbjct: 790 atcgacatgcaaatcaagctagtatcgggcaactcggctggcactgtcaccac 738
>gb|DT509897.1|DT509897 WS02425.BR_A16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02425_A16 5', mRNA sequence
Length = 888
Score = 50.1 bits (25), Expect = 1e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 281 tccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatc 340
|||||||| || || || |||||||||||||| || ||||| | ||| || |||||||||
Sbjct: 49 tccggctctggctttcaatccaagagcgagtatctcttcggaaggatagatatgcagatc 108
Query: 341 aagct 345
|||||
Sbjct: 109 aagct 113
>gb|DT509990.1|DT509990 WS02425.BR_E18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02425_E18 5', mRNA sequence
Length = 818
Score = 50.1 bits (25), Expect = 1e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 326 atcgacatgcagatcaagctggtgccaggcaactccgctggcacggtcaccac 378
||||||||||| |||||||| || | |||||||| |||||||| ||||||||
Sbjct: 284 atcgacatgcaaatcaagctagtatcgggcaactcggctggcactgtcaccac 336
>gb|DT514611.1|DT514611 WS02425.B21_E18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02425_E18 3', mRNA sequence
Length = 905
Score = 50.1 bits (25), Expect = 1e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 326 atcgacatgcagatcaagctggtgccaggcaactccgctggcacggtcaccac 378
||||||||||| |||||||| || | |||||||| |||||||| ||||||||
Sbjct: 790 atcgacatgcaaatcaagctagtatcgggcaactcggctggcactgtcaccac 738
>gb|BI071607.1|BI071607 C060P75U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 399
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 405 cgcacgacgagatcgacttcgagttcctggg 435
|||| ||||||||||||||||||||| ||||
Sbjct: 238 cgcatgacgagatcgacttcgagttcttggg 268
>gb|BU808987.1|BU808987 UL52PD01 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 484
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 290 gggttccagtccaagagcgagtacctgttcggcaagatcgacatgca 336
|||||| ||||||||||| | ||| ||||||| || |||||||||||
Sbjct: 239 gggttcaagtccaagagccaatacttgttcgggaaaatcgacatgca 285
>gb|BU811066.1|BU811066 UL79TE09 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 433
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 290 gggttccagtccaagagcgagtacctgttcggcaagatcgacatgca 336
|||||| ||||||||||| | ||| ||||||| || |||||||||||
Sbjct: 241 gggttcaagtccaagagccaatacttgttcgggaaaatcgacatgca 287
>gb|BU812392.1|BU812392 UL95TG07 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 595
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 290 gggttccagtccaagagcgagtacctgttcggcaagatcgacatgca 336
|||||| ||||||||| | ||||| ||||||| || |||||||||||
Sbjct: 240 gggttcaagtccaagaaccagtacttgttcgggaaaatcgacatgca 286
>gb|BU812637.1|BU812637 UL98TG02 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 642
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 405 cgcacgacgagatcgacttcgagttcctggg 435
|||| ||||||||||||||||||||| ||||
Sbjct: 352 cgcatgacgagatcgacttcgagttcttggg 382
>gb|BU817238.1|BU817238 UA14CPE11 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 446
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 290 gggttccagtccaagagcgagtacctgttcggcaagatcgacatgca 336
|||||| ||||||||| | ||||| ||||||| || |||||||||||
Sbjct: 261 gggttcaagtccaagaaccagtacttgttcgggaaaatcgacatgca 307
>gb|BU817498.1|BU817498 UA17CPF12 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 432
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 290 gggttccagtccaagagcgagtacctgttcggcaagatcgacatgca 336
|||||| ||||||||| | ||||| ||||||| || |||||||||||
Sbjct: 240 gggttcaagtccaagaaccagtacttgttcgggaaaatcgacatgca 286
>gb|BU829855.1|BU829855 K068P91P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 494
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 290 gggttccagtccaagagcgagtacctgttcggcaagatcgacatgca 336
|||||| ||||||||||| | ||| ||||||| || |||||||||||
Sbjct: 175 gggttcaagtccaagagccaatacttgttcgggaaaatcgacatgca 221
>gb|BU829974.1|BU829974 T002D07 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 713
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 405 cgcacgacgagatcgacttcgagttcctggg 435
|||| ||||||||||||||||||||| ||||
Sbjct: 254 cgcatgacgagatcgacttcgagttcttggg 284
>gb|BU862300.1|BU862300 S013H07 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 588
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 290 gggttccagtccaagagcgagtacctgttcggcaagatcgacatgca 336
|||||| ||||||||| | ||||| ||||||| || |||||||||||
Sbjct: 250 gggttcaagtccaagaaccagtacttgttcgggaaaatcgacatgca 296
>gb|BU864592.1|BU864592 S042E06 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 450
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 290 gggttccagtccaagagcgagtacctgttcggcaagatcgacatgca 336
|||||| ||||||||| | ||||| ||||||| || |||||||||||
Sbjct: 227 gggttcaagtccaagaaccagtacttgttcgggaaaatcgacatgca 273
>gb|BU864803.1|BU864803 S045B03 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 458
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 290 gggttccagtccaagagcgagtacctgttcggcaagatcgacatgca 336
|||||| ||||||||| | ||||| ||||||| || |||||||||||
Sbjct: 241 gggttcaagtccaagaaccagtacttgttcgggaaaatcgacatgca 287
>gb|BU865284.1|BU865284 S051E06 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 584
Score = 46.1 bits (23), Expect = 0.002
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 410 gacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcacacc 469
||||||||||||||||||||| |||| ||| | | ||| || || |||| ||||||||
Sbjct: 360 gacgagatcgacttcgagttcttggggaacctcaccggcgacccttacattttgcacacc 419
Query: 470 aacgtgttcac 480
|| ||||||||
Sbjct: 420 aatgtgttcac 430
>gb|BU866197.1|BU866197 S063H03 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 587
Score = 46.1 bits (23), Expect = 0.002
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 410 gacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcacacc 469
||||||||||||||||||||| |||| ||| | | ||| || || |||| ||||||||
Sbjct: 369 gacgagatcgacttcgagttcttggggaacctcaccggcgacccttacattttgcacacc 428
Query: 470 aacgtgttcac 480
|| ||||||||
Sbjct: 429 aatgtgttcac 439
>gb|BU866977.1|BU866977 S072H08 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 648
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 290 gggttccagtccaagagcgagtacctgttcggcaagatcgacatgca 336
|||||| ||||||||| | ||||| ||||||| || |||||||||||
Sbjct: 246 gggttcaagtccaagaaccagtacttgttcgggaaaatcgacatgca 292
>gb|BU867001.1|BU867001 S073B10 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 635
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 290 gggttccagtccaagagcgagtacctgttcggcaagatcgacatgca 336
|||||| ||||||||| | ||||| ||||||| || |||||||||||
Sbjct: 235 gggttcaagtccaagaaccagtacttgttcgggaaaatcgacatgca 281
>gb|BU878471.1|BU878471 V047G03 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 350
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 498 gggagcagcagttccgcctctggttcgaccc 528
|||||||||||||||||| |||||| |||||
Sbjct: 92 gggagcagcagttccgcccctggtttgaccc 122
>gb|BU884356.1|BU884356 R009E11 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 584
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 290 gggttccagtccaagagcgagtacctgttcggcaagatcgacatgca 336
|||||| ||||||||||| | ||| ||||||| || |||||||||||
Sbjct: 181 gggttcaagtccaagagccaatacttgttcgggaaaatcgacatgca 227
>gb|BU885695.1|BU885695 R034G07 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 620
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 290 gggttccagtccaagagcgagtacctgttcggcaagatcgacatgca 336
|||||| ||||||||||| | ||| ||||||| || |||||||||||
Sbjct: 217 gggttcaagtccaagagccaatacttgttcgggaaaatcgacatgca 263
>gb|BU885722.1|BU885722 R035C01 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 603
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 290 gggttccagtccaagagcgagtacctgttcggcaagatcgacatgca 336
|||||| ||||||||||| | ||| ||||||| || |||||||||||
Sbjct: 219 gggttcaagtccaagagccaatacttgttcgggaaaatcgacatgca 265
>gb|BU887876.1|BU887876 R068E12 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 634
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 290 gggttccagtccaagagcgagtacctgttcggcaagatcgacatgca 336
|||||| ||||||||| | ||||| ||||||| || |||||||||||
Sbjct: 231 gggttcaagtccaagaaccagtacttgttcgggaaaatcgacatgca 277
>gb|BU888042.1|BU888042 P002H09 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 640
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 290 gggttccagtccaagagcgagtacctgttcggcaagatcgacatgca 336
|||||| ||||||||||| | ||| ||||||| || |||||||||||
Sbjct: 246 gggttcaagtccaagagccaatacttgttcgggaaaatcgacatgca 292
>gb|BU893215.1|BU893215 P074G09 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 603
Score = 46.1 bits (23), Expect = 0.002
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 410 gacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcacacc 469
||||||||||||||||||||| |||| ||| | | ||| || || |||| ||||||||
Sbjct: 379 gacgagatcgacttcgagttcttggggaacctcaccggcgacccttacattttgcacacc 438
Query: 470 aacgtgttcac 480
|| ||||||||
Sbjct: 439 aatgtgttcac 449
>gb|CA927406.1|CA927406 MTU6CR.P8.F04 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 616
Score = 46.1 bits (23), Expect = 0.002
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 410 gacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcacacc 469
||||||||||||||||||||| |||| ||| | | ||| || || |||| ||||||||
Sbjct: 370 gacgagatcgacttcgagttcttgggaaacctcaccggcgacccttacattttgcacacc 311
Query: 470 aacgtgttcac 480
|| ||||||||
Sbjct: 310 aatgtgttcac 300
>gb|CF231175.1|CF231175 PtaC0018C7C0705 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 733
Score = 46.1 bits (23), Expect = 0.002
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 410 gacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcacacc 469
||||||||||||||||||||| |||| ||| | | ||| || || |||| ||||||||
Sbjct: 380 gacgagatcgacttcgagttcttggggaacctcaccggcgacccttacattttgcacacc 439
Query: 470 aacgtgttcac 480
|| ||||||||
Sbjct: 440 aatgtgttcac 450
>gb|CF232558.1|CF232558 PtaJXO0011H4H0416 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 636
Score = 46.1 bits (23), Expect = 0.002
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 410 gacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcacacc 469
||||||||||||||||||||| |||| ||| | | ||| || || |||| ||||||||
Sbjct: 240 gacgagatcgacttcgagttcttggggaacctcaccggcgacccttacattttgcacacc 299
Query: 470 aacgtgttcac 480
|| ||||||||
Sbjct: 300 aatgtgttcac 310
>gb|CK105510.1|CK105510 UA17CPF12.5pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA17CPF12 5', mRNA sequence
Length = 331
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 290 gggttccagtccaagagcgagtacctgttcggcaagatcgacatgca 336
|||||| ||||||||| | ||||| ||||||| || |||||||||||
Sbjct: 199 gggttcaagtccaagaaccagtacttgttcgggaaaatcgacatgca 245
>gb|CN520892.1|CN520892 GQ0107.B3_B21 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0107_B21 5', mRNA sequence
Length = 793
Score = 46.1 bits (23), Expect = 0.002
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 410 gacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcacacc 469
||||||||||||||||||||| |||| ||| | ||||| || || |||| |||||||
Sbjct: 343 gacgagatcgacttcgagttcttggggaacctcagcggcgacccttacattttgcacact 402
Query: 470 aacgtgttcac 480
|| ||||||||
Sbjct: 403 aatgtgttcac 413
>gb|CN523304.1|CN523304 GQ015M01.B3_L01 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M01_L01 5', mRNA sequence
Length = 696
Score = 46.1 bits (23), Expect = 0.002
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 410 gacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcacacc 469
||||||||||||||||||||| |||| ||| | ||||| || || |||| |||||||
Sbjct: 380 gacgagatcgacttcgagttcttggggaacctcagcggcgacccttacattttgcacact 439
Query: 470 aacgtgttcac 480
|| ||||||||
Sbjct: 440 aatgtgttcac 450
>gb|CN549971.1|CN549971 GQ0243.B3_C07 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0243_C07 5', mRNA sequence
Length = 514
Score = 46.1 bits (23), Expect = 0.002
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 410 gacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcacacc 469
||||||||||||||||||||| |||| ||| | ||||| || || |||| |||||||
Sbjct: 485 gacgagatcgacttcgagttcttggggaacctcagcggcgacccttacattttgcacact 426
Query: 470 aacgtgttcac 480
|| ||||||||
Sbjct: 425 aatgtgttcac 415
>gb|CV236170.1|CV236170 WS01223.B21_B16 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01223_B16 3', mRNA sequence
Length = 838
Score = 46.1 bits (23), Expect = 0.002
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 410 gacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcacacc 469
||||||||||||||||||||| |||| ||| | ||||| || || |||| |||||||
Sbjct: 822 gacgagatcgacttcgagttcttggggaacctcagcggcgacccttacattttgcacact 763
Query: 470 aacgtgttcac 480
|| ||||||||
Sbjct: 762 aatgtgttcac 752
>gb|CV237332.1|CV237332 WS01227.B21.1_I01 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01227_I01 3', mRNA sequence
Length = 870
Score = 46.1 bits (23), Expect = 0.002
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 410 gacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcacacc 469
||||||||||||||||||||| |||| ||| | ||||| || || |||| |||||||
Sbjct: 822 gacgagatcgacttcgagttcttggggaacctcagcggcgacccttacattttgcacact 763
Query: 470 aacgtgttcac 480
|| ||||||||
Sbjct: 762 aatgtgttcac 752
>gb|CV270106.1|CV270106 WS0151.B21_B16 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0151_B16 3', mRNA sequence
Length = 875
Score = 46.1 bits (23), Expect = 0.002
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 410 gacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcacacc 469
||||||||||||||||||||| |||| ||| | ||||| || || |||| |||||||
Sbjct: 836 gacgagatcgacttcgagttcttggggaacctcagcggcgacccttacattttgcacact 777
Query: 470 aacgtgttcac 480
|| ||||||||
Sbjct: 776 aatgtgttcac 766
>gb|CX653969.1|CX653969 PO02011A02 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02011A02 5', mRNA sequence
Length = 186
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 405 cgcacgacgagatcgacttcgagttcctggg 435
|||| ||||||||||||||||||||| ||||
Sbjct: 135 cgcatgacgagatcgacttcgagttcttggg 165
>gb|CX655073.1|CX655073 PO01004E04 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01004E04 5', mRNA sequence
Length = 620
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 405 cgcacgacgagatcgacttcgagttcctggg 435
|||| ||||||||||||||||||||| ||||
Sbjct: 324 cgcatgacgagatcgacttcgagttcttggg 354
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 40,512
Number of Sequences: 369679
Number of extensions: 40512
Number of successful extensions: 9568
Number of sequences better than 0.5: 75
Number of HSP's better than 0.5 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9377
Number of HSP's gapped (non-prelim): 191
length of query: 678
length of database: 203,408,664
effective HSP length: 19
effective length of query: 659
effective length of database: 196,384,763
effective search space: 129417558817
effective search space used: 129417558817
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)