BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2643622.2.1
         (1067 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BU866312.1|BU866312  S065C03 Populus imbibed seed cDNA li...    44   0.011
gb|AJ776528.1|AJ776528  AJ776528 Populus euphratica root 3-6...    42   0.043
gb|AI165143.1|AI165143  A076p09u Hybrid aspen plasmid librar...    40   0.17 
gb|BU896193.1|BU896193  X037A01 Populus wood cDNA library Po...    40   0.17 
gb|BU896728.1|BU896728  X044H01 Populus wood cDNA library Po...    40   0.17 
gb|CF119044.1|CF119044  MTU10CS.P12.G06 Aspen stem cDNA Libr...    40   0.17 

>gb|BU866312.1|BU866312 S065C03 Populus imbibed seed cDNA library Populus tremula cDNA 5
           prime, mRNA sequence
          Length = 626

 Score = 44.1 bits (22), Expect = 0.011
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                       
Query: 587 agcatcagcggcgtcggcgggtgcaggcgcagggactccttgacgactgcctgcaggtaa 646
           ||||||||||| ||||| |||||||  | ||| || |||||||| || || |||||||||
Sbjct: 133 agcatcagcggtgtcggtgggtgcaacctcagcgattccttgactacagcttgcaggtaa 74

             
Query: 647 gg 648
           ||
Sbjct: 73  gg 72



>gb|AJ776528.1|AJ776528 AJ776528 Populus euphratica root 3-6 months Populus euphratica cDNA
           clone P0000400014F03F1, mRNA sequence
          Length = 471

 Score = 42.1 bits (21), Expect = 0.043
 Identities = 99/125 (79%)
 Strand = Plus / Minus

                                                                       
Query: 725 tgcaccctggggttcctcagcagctccgccatcgcccactacaccgagatcaccgtcgtg 784
           |||||||| |||||| | | |||||| ||||| ||||| |  || |||||  | || |||
Sbjct: 391 tgcacccttgggttcttgatcagctctgccattgcccattctactgagattgcagttgtg 332

                                                                       
Query: 785 tccgtgccggcggtgatcatgtcccagaggaggcctatgacggtgtcgtcgctgaggtcg 844
           ||| |||| || || ||||||||||| ||||| || ||||  ||||| || || ||||||
Sbjct: 331 tccatgcccgcagtaatcatgtcccaaaggagtccaatgattgtgtcttcactaaggtcg 272

                
Query: 845 tactt 849
           |||||
Sbjct: 271 tactt 267



>gb|AI165143.1|AI165143 A076p09u Hybrid aspen plasmid library Populus tremula x Populus
           tremuloides cDNA 5', mRNA sequence
          Length = 361

 Score = 40.1 bits (20), Expect = 0.17
 Identities = 56/68 (82%)
 Strand = Plus / Minus

                                                                       
Query: 782 gtgtccgtgccggcggtgatcatgtcccagaggaggcctatgacggtgtcgtcgctgagg 841
           |||||| |||| || |||||||||||||| ||||| || ||||  ||||| || || |||
Sbjct: 142 gtgtccatgcccgcagtgatcatgtcccaaaggagtccaatgattgtgtcttcactaagg 83

                   
Query: 842 tcgtactt 849
           || |||||
Sbjct: 82  tcatactt 75



>gb|BU896193.1|BU896193 X037A01 Populus wood cDNA library Populus tremula x Populus
           tremuloides cDNA 5 prime, mRNA sequence
          Length = 556

 Score = 40.1 bits (20), Expect = 0.17
 Identities = 56/68 (82%)
 Strand = Plus / Minus

                                                                       
Query: 782 gtgtccgtgccggcggtgatcatgtcccagaggaggcctatgacggtgtcgtcgctgagg 841
           |||||| |||| || |||||||||||||| ||||| || ||||  ||||| || || |||
Sbjct: 94  gtgtccatgcccgcagtgatcatgtcccaaaggagtccaatgattgtgtcttcactaagg 35

                   
Query: 842 tcgtactt 849
           || |||||
Sbjct: 34  tcatactt 27



>gb|BU896728.1|BU896728 X044H01 Populus wood cDNA library Populus tremula x Populus
           tremuloides cDNA 5 prime, mRNA sequence
          Length = 600

 Score = 40.1 bits (20), Expect = 0.17
 Identities = 56/68 (82%)
 Strand = Plus / Minus

                                                                       
Query: 782 gtgtccgtgccggcggtgatcatgtcccagaggaggcctatgacggtgtcgtcgctgagg 841
           |||||| |||| || |||||||||||||| ||||| || ||||  ||||| || || |||
Sbjct: 285 gtgtccatgcccgcagtgatcatgtcccaaaggagtccaatgattgtgtcttcactaagg 226

                   
Query: 842 tcgtactt 849
           || |||||
Sbjct: 225 tcatactt 218



>gb|CF119044.1|CF119044 MTU10CS.P12.G06 Aspen stem cDNA Library Populus tremuloides cDNA,
           mRNA sequence
          Length = 777

 Score = 40.1 bits (20), Expect = 0.17
 Identities = 56/68 (82%)
 Strand = Plus / Plus

                                                                       
Query: 782 gtgtccgtgccggcggtgatcatgtcccagaggaggcctatgacggtgtcgtcgctgagg 841
           |||||| |||| || |||||||||||||| ||||| || ||||  ||||| || || |||
Sbjct: 592 gtgtccatgcccgcagtgatcatgtcccaaaggagtccaatgattgtgtcttcactaagg 651

                   
Query: 842 tcgtactt 849
           || |||||
Sbjct: 652 tcatactt 659



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 65,477
Number of Sequences: 369679
Number of extensions: 65477
Number of successful extensions: 17285
Number of sequences better than  0.5: 6
Number of HSP's better than  0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17273
Number of HSP's gapped (non-prelim): 12
length of query: 1067
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1048
effective length of database: 196,384,763
effective search space: 205811231624
effective search space used: 205811231624
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)