BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2643556.2.1
(1354 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU882889.1|BU882889 UM83TF04 Populus flower cDNA library... 66 4e-009
gb|CV256507.1|CV256507 WS0244.B21_A19 PTxD-ICC-N-A-14 Popul... 66 4e-009
gb|DN491294.1|DN491294 UM83TF04.3pR Populus female catkins ... 66 4e-009
gb|DN501305.1|DN501305 UM83TF04.5pR Populus female catkins ... 66 4e-009
gb|DT509633.1|DT509633 WS02424.BR_E10 PTxD-ICC-N-A-14 Popul... 66 4e-009
gb|DT510612.1|DT510612 WS02427.BR_A17 PTxD-ICC-N-A-14 Popul... 66 4e-009
gb|DT517651.1|DT517651 WS02434.B21_O16 PTxD-ICC-N-A-14 Popu... 66 4e-009
gb|DT520688.1|DT520688 WS02448.B21_E04 PTxD-ICC-N-A-14 Popu... 66 4e-009
gb|BU883614.1|BU883614 UM95TA01 Populus flower cDNA library... 58 9e-007
gb|AF052570.1|AF052570 Populus balsamifera subsp. trichocar... 58 9e-007
gb|AY359607.1| Populus yunnanensis sex male AGAMOUS (AG2) g... 58 9e-007
gb|AY359609.1| Populus tomentosa sex female AGAMOUS (AG2) g... 58 9e-007
gb|BU878009.1|BU878009 V042A05 Populus flower cDNA library ... 50 2e-004
gb|BU882965.1|BU882965 UM84TE12 Populus flower cDNA library... 50 2e-004
gb|DN484153.1|DN484153 PTRI27.5pR Populus cDNA, trichocarpa... 50 2e-004
gb|AF052571.1|AF052571 Populus balsamifera subsp. trichocar... 50 2e-004
gb|AY359608.1| Populus yunnanensis sex male AGAMOUS (AG1) g... 50 2e-004
gb|AY359610.1| Populus tomentosa sex female AGAMOUS (AG1) g... 50 2e-004
gb|AY359612.1| Populus tomentosa sex male AGAMOUS (AG1) gen... 50 2e-004
gb|CN519626.1|CN519626 GQ0104.B3_J10 GQ010 Populus trichoca... 48 9e-004
gb|AY359611.1| Populus tomentosa sex male AGAMOUS (AG2) gen... 48 9e-004
gb|CK098004.1|CK098004 A001P54.5pR Hybrid aspen plasmid lib... 42 0.055
gb|DT515243.1|DT515243 WS02427.B21_A17 PTxD-ICC-N-A-14 Popu... 42 0.055
>gb|BU882889.1|BU882889 UM83TF04 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 588
Score = 65.9 bits (33), Expect = 4e-009
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 378 ctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaaca 426
|||||||||||||| ||||| ||||| ||||| ||||||||||||||||
Sbjct: 237 ctcatcgtcttctctagccgtggccgtctctatgagtacgccaacaaca 285
>gb|CV256507.1|CV256507 WS0244.B21_A19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0244_A19 3', mRNA sequence
Length = 877
Score = 65.9 bits (33), Expect = 4e-009
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 378 ctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaaca 426
|||||||||||||| ||||| ||||| ||||| ||||||||||||||||
Sbjct: 855 ctcatcgtcttctctagccgtggccgtctctatgagtacgccaacaaca 807
>gb|DN491294.1|DN491294 UM83TF04.3pR Populus female catkins cDNA library Populus
trichocarpa cDNA clone UM83TF04 3', mRNA sequence
Length = 813
Score = 65.9 bits (33), Expect = 4e-009
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 378 ctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaaca 426
|||||||||||||| ||||| ||||| ||||| ||||||||||||||||
Sbjct: 626 ctcatcgtcttctctagccgtggccgtctctatgagtacgccaacaaca 578
>gb|DN501305.1|DN501305 UM83TF04.5pR Populus female catkins cDNA library Populus
trichocarpa cDNA clone UM83TF04 5', mRNA sequence
Length = 860
Score = 65.9 bits (33), Expect = 4e-009
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 378 ctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaaca 426
|||||||||||||| ||||| ||||| ||||| ||||||||||||||||
Sbjct: 221 ctcatcgtcttctctagccgtggccgtctctatgagtacgccaacaaca 269
>gb|DT509633.1|DT509633 WS02424.BR_E10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02424_E10 5', mRNA sequence
Length = 905
Score = 65.9 bits (33), Expect = 4e-009
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 378 ctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaaca 426
|||||||||||||| ||||| ||||| ||||| ||||||||||||||||
Sbjct: 197 ctcatcgtcttctctagccgtggccgtctctatgagtacgccaacaaca 245
>gb|DT510612.1|DT510612 WS02427.BR_A17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02427_A17 5', mRNA sequence
Length = 920
Score = 65.9 bits (33), Expect = 4e-009
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 378 ctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaaca 426
|||||||||||||| ||||| ||||| ||||| ||||||||||||||||
Sbjct: 201 ctcatcgtcttctctagccgtggccgtctctatgagtacgccaacaaca 249
>gb|DT517651.1|DT517651 WS02434.B21_O16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02434_O16 3', mRNA sequence
Length = 924
Score = 65.9 bits (33), Expect = 4e-009
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 378 ctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaaca 426
|||||||||||||| ||||| ||||| ||||| ||||||||||||||||
Sbjct: 858 ctcatcgtcttctctagccgtggccgtctctatgagtacgccaacaaca 810
>gb|DT520688.1|DT520688 WS02448.B21_E04 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02448_E04 3', mRNA sequence
Length = 897
Score = 65.9 bits (33), Expect = 4e-009
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 378 ctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaaca 426
|||||||||||||| ||||| ||||| ||||| ||||||||||||||||
Sbjct: 856 ctcatcgtcttctctagccgtggccgtctctatgagtacgccaacaaca 808
>gb|BU883614.1|BU883614 UM95TA01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 613
Score = 58.0 bits (29), Expect = 9e-007
Identities = 122/153 (79%)
Strand = Plus / Plus
Query: 264 gagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaac 323
||||||||||| ||||||||||| ||||| | || ||||| |||||||| | ||||
Sbjct: 291 gagatcaagcggatcgagaacaccaccaatcgccaagtcactttctgcaaaaggcgcagt 350
Query: 324 ggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatc 383
|| | |||||||| || ||||| | || || || ||||| || ||||| || ||||||
Sbjct: 351 ggtttgctcaagaaagcctacgaattatctgttctttgcgatgctgaggttgcactcatc 410
Query: 384 gtcttctccagccgcggccgcctctacgagtac 416
|||||||| |||||||| ||||| || ||||||
Sbjct: 411 gtcttctctagccgcggtcgcctttatgagtac 443
>gb|AF052570.1|AF052570 Populus balsamifera subsp. trichocarpa AGAMOUS homolog (PTAG1) gene,
complete cds
Length = 11485
Score = 58.0 bits (29), Expect = 9e-007
Identities = 122/153 (79%)
Strand = Plus / Plus
Query: 264 gagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaac 323
||||||||||| ||||||||||| ||||| | || ||||| |||||||| | ||||
Sbjct: 3133 gagatcaagcggatcgagaacaccaccaatcgccaagtcactttctgcaaaaggcgcagt 3192
Query: 324 ggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatc 383
|| | |||||||| || ||||| | || || || ||||| || ||||| || ||||||
Sbjct: 3193 ggtttgctcaagaaagcctacgaattatctgttctttgcgatgctgaggttgcactcatc 3252
Query: 384 gtcttctccagccgcggccgcctctacgagtac 416
|||||||| |||||||| ||||| || ||||||
Sbjct: 3253 gtcttctctagccgcggtcgcctttatgagtac 3285
>gb|AY359607.1| Populus yunnanensis sex male AGAMOUS (AG2) gene, partial cds
Length = 227
Score = 58.0 bits (29), Expect = 9e-007
Identities = 122/153 (79%)
Strand = Plus / Plus
Query: 264 gagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaac 323
||||||||||| ||||||||||| ||||| | || ||||| |||||||| | || ||
Sbjct: 64 gagatcaagcggatcgagaacaccaccaatcgccaagtcactttctgcaaaaggcggaat 123
Query: 324 ggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatc 383
|| | |||||||| || || || | ||||| || ||||| || ||||| || ||||||
Sbjct: 124 ggtttgctcaagaaagcctatgaattatccgttctttgcgatgctgaggttgcactcatc 183
Query: 384 gtcttctccagccgcggccgcctctacgagtac 416
|||||||||||||| || ||||| || ||||||
Sbjct: 184 gtcttctccagccgtggacgcctttatgagtac 216
>gb|AY359609.1| Populus tomentosa sex female AGAMOUS (AG2) gene, partial cds
Length = 227
Score = 58.0 bits (29), Expect = 9e-007
Identities = 122/153 (79%)
Strand = Plus / Plus
Query: 264 gagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaac 323
||||||||||| ||||||||||| ||||| | || ||||| |||||||| | || ||
Sbjct: 64 gagatcaagcggatcgagaacaccaccaatcgccaagtcactttctgcaaaaggcggaat 123
Query: 324 ggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatc 383
|| | |||||||| || || || | ||||| || ||||| || ||||| || ||||||
Sbjct: 124 ggtttgctcaagaaagcctatgaattatccgttctttgcgatgctgaggttgcactcatc 183
Query: 384 gtcttctccagccgcggccgcctctacgagtac 416
|||||||||||||| || ||||| || ||||||
Sbjct: 184 gtcttctccagccgtggacgcctttatgagtac 216
>gb|BU878009.1|BU878009 V042A05 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 278
Score = 50.1 bits (25), Expect = 2e-004
Identities = 121/153 (79%)
Strand = Plus / Plus
Query: 264 gagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaac 323
||||||||||| ||||||||||| ||||| | || ||||| |||||||| | || ||
Sbjct: 73 gagatcaagcggatcgagaacaccaccaatcgccaagtcactttctgcaaaaggcggaat 132
Query: 324 ggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatc 383
|| | |||||||| || || || | || || || ||||| || ||||| || ||||||
Sbjct: 133 ggtttgctcaagaaagcctatgaattatctgttctttgcgatgctgaggttgcactcatc 192
Query: 384 gtcttctccagccgcggccgcctctacgagtac 416
|||||||||||||| || ||||| || ||||||
Sbjct: 193 gtcttctccagccgtggacgcctttatgagtac 225
>gb|BU882965.1|BU882965 UM84TE12 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 562
Score = 50.1 bits (25), Expect = 2e-004
Identities = 121/153 (79%)
Strand = Plus / Plus
Query: 264 gagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaac 323
||||||||||| ||||||||||| ||||| | || ||||| |||||||| | || ||
Sbjct: 214 gagatcaagcggatcgagaacaccaccaatcgccaagtcactttctgcaaaaggcggaat 273
Query: 324 ggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatc 383
|| | |||||||| || || || | || || || ||||| || ||||| || ||||||
Sbjct: 274 ggtttgctcaagaaagcctatgaattatctgttctttgcgatgctgaggttgcactcatc 333
Query: 384 gtcttctccagccgcggccgcctctacgagtac 416
|||||||||||||| || ||||| || ||||||
Sbjct: 334 gtcttctccagccgtggacgcctttatgagtac 366
>gb|DN484153.1|DN484153 PTRI27.5pR Populus cDNA, trichocarpa shoot library Populus
trichocarpa cDNA clone PTRI27 5', mRNA sequence
Length = 381
Score = 50.1 bits (25), Expect = 2e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 360 tgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtac 416
||||| || ||||| || |||||||||||||||||||| || ||||| || ||||||
Sbjct: 263 tgcgatgctgaggttgcactcatcgtcttctccagccgtggacgcctttatgagtac 319
Score = 40.1 bits (20), Expect = 0.22
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 266 gatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaa 313
||||||||| ||||||||||| ||||| | || ||||| ||||||||
Sbjct: 166 gatcaagcggatcgagaacaccaccaatcgccaagtcactttctgcaa 213
>gb|AF052571.1|AF052571 Populus balsamifera subsp. trichocarpa AGAMOUS homolog (PTAG2) gene,
complete cds
Length = 10007
Score = 50.1 bits (25), Expect = 2e-004
Identities = 121/153 (79%)
Strand = Plus / Plus
Query: 264 gagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaac 323
||||||||||| ||||||||||| ||||| | || ||||| |||||||| | || ||
Sbjct: 2990 gagatcaagcggatcgagaacaccaccaatcgccaagtcactttctgcaaaaggcggaat 3049
Query: 324 ggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatc 383
|| | |||||||| || || || | || || || ||||| || ||||| || ||||||
Sbjct: 3050 ggtttgctcaagaaagcctatgaattatctgttctttgcgatgctgaggttgcactcatc 3109
Query: 384 gtcttctccagccgcggccgcctctacgagtac 416
|||||||||||||| || ||||| || ||||||
Sbjct: 3110 gtcttctccagccgtggacgcctttatgagtac 3142
>gb|AY359608.1| Populus yunnanensis sex male AGAMOUS (AG1) gene, partial cds
Length = 227
Score = 50.1 bits (25), Expect = 2e-004
Identities = 121/153 (79%)
Strand = Plus / Plus
Query: 264 gagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaac 323
||||||||||| ||||||||||| ||||| | || ||||| |||||||| | ||||
Sbjct: 64 gagatcaagcggatcgagaacaccaccaatcgccaagtcactttctgcaaaaggcgcagt 123
Query: 324 ggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatc 383
|| | |||||||| || ||||| | || || || ||||| || ||||| || ||||||
Sbjct: 124 ggtttgctcaagaaagcctacgaattatctgttctttgcgatgctgaggttgcactcatc 183
Query: 384 gtcttctccagccgcggccgcctctacgagtac 416
|||||||| | |||||| ||||| || ||||||
Sbjct: 184 gtcttctctacccgcggtcgcctttatgagtac 216
>gb|AY359610.1| Populus tomentosa sex female AGAMOUS (AG1) gene, partial cds
Length = 227
Score = 50.1 bits (25), Expect = 2e-004
Identities = 121/153 (79%)
Strand = Plus / Plus
Query: 264 gagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaac 323
||||||||||| ||||||||||| ||||| | || ||||| |||||||| | ||||
Sbjct: 64 gagatcaagcggatcgagaacaccaccaatcgccaagtcactttctgcaaaaggcgcagt 123
Query: 324 ggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatc 383
|| | |||||||| || ||||| | || || || ||||| || ||||| || ||||||
Sbjct: 124 ggtttgctcaagaaagcctacgaattatctgttctttgcgatgctgaggttgcactcatc 183
Query: 384 gtcttctccagccgcggccgcctctacgagtac 416
|||||||| | |||||| ||||| || ||||||
Sbjct: 184 gtcttctctacccgcggtcgcctttatgagtac 216
>gb|AY359612.1| Populus tomentosa sex male AGAMOUS (AG1) gene, partial cds
Length = 227
Score = 50.1 bits (25), Expect = 2e-004
Identities = 121/153 (79%)
Strand = Plus / Plus
Query: 264 gagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaac 323
||||||||||| ||||||||||| ||||| | || ||||| |||||||| | ||||
Sbjct: 64 gagatcaagcggatcgagaacaccaccaatcgccaagtcactttctgcaaaaggcgcagt 123
Query: 324 ggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatc 383
|| | |||||||| || ||||| | || || || || || || ||||| || ||||||
Sbjct: 124 ggtttgctcaagaaagcctacgaattatctgttctttgtgatgctgaggttgcactcatc 183
Query: 384 gtcttctccagccgcggccgcctctacgagtac 416
|||||||||||||| || ||||| || ||||||
Sbjct: 184 gtcttctccagccgtggacgcctttatgagtac 216
>gb|CN519626.1|CN519626 GQ0104.B3_J10 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0104_J10 5', mRNA sequence
Length = 751
Score = 48.1 bits (24), Expect = 9e-004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 292 acaggcaggtcaccttctgcaagcgccg 319
|||||||||| |||||||||||||||||
Sbjct: 108 acaggcaggttaccttctgcaagcgccg 135
>gb|AY359611.1| Populus tomentosa sex male AGAMOUS (AG2) gene, partial cds
Length = 227
Score = 48.1 bits (24), Expect = 9e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 369 gaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtac 416
||||| || |||||||||||||||||||| || ||||| || ||||||
Sbjct: 169 gaggttgcactcatcgtcttctccagccgtggacgcctttatgagtac 216
>gb|CK098004.1|CK098004 A001P54.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A001P54 5', mRNA sequence
Length = 216
Score = 42.1 bits (21), Expect = 0.055
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 292 acaggcaggtcaccttctgcaagcg 316
|||||||||| ||||||||||||||
Sbjct: 134 acaggcaggttaccttctgcaagcg 158
>gb|DT515243.1|DT515243 WS02427.B21_A17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02427_A17 3', mRNA sequence
Length = 835
Score = 42.1 bits (21), Expect = 0.055
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 394 gccgcggccgcctctacgagtacgccaacaaca 426
|||| ||||| ||||| ||||||||||||||||
Sbjct: 835 gccgtggccgtctctatgagtacgccaacaaca 803
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 156,066
Number of Sequences: 369679
Number of extensions: 156066
Number of successful extensions: 45640
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45586
Number of HSP's gapped (non-prelim): 54
length of query: 1354
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1335
effective length of database: 196,384,763
effective search space: 262173658605
effective search space used: 262173658605
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)