BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2621801.2.1
(679 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI130598.1|BI130598 G108P01Y Populus cambium cDNA librar... 42 0.027
gb|BU884745.1|BU884745 R014H12 Populus root cDNA library Po... 38 0.42
gb|DN488090.1|DN488090 R032A09.3pR Populus root cDNA librar... 38 0.42
>gb|BI130598.1|BI130598 G108P01Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 277
Score = 42.1 bits (21), Expect = 0.027
Identities = 85/105 (80%), Gaps = 1/105 (0%)
Strand = Plus / Minus
Query: 567 gtcgatctgaggcccctgttcgaccccgtccctgaaggggtcgccgacgacgcg-cttag 625
|||||||||||| || ||||| || || | | ||||||| ||||| || ||||| |||||
Sbjct: 228 gtcgatctgaggaccttgttcaacacccttcttgaagggatcgccaacaacgcgtcttag 169
Query: 626 ggcgcgggccttggacttctccacgaactcgtcgtacacgcgctc 670
|| || ||||| | ||||| |||||||| |||||||| |||||
Sbjct: 168 agcacgtgcctttgctttctctacgaactcatcgtacacacgctc 124
>gb|BU884745.1|BU884745 R014H12 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 555
Score = 38.2 bits (19), Expect = 0.42
Identities = 80/99 (80%), Gaps = 1/99 (1%)
Strand = Plus / Minus
Query: 567 gtcgatctgaggcccctgttcgaccccgtccctgaaggggtcgccgacgacgcg-cttag 625
|||||||||||| || ||||| || || | | ||||||| ||||| || ||||| |||||
Sbjct: 408 gtcgatctgaggaccttgttcaacacccttcttgaagggatcgccaacaacgcgtcttag 349
Query: 626 ggcgcgggccttggacttctccacgaactcgtcgtacac 664
|| || ||||| | ||||| |||||||| ||||||||
Sbjct: 348 agcacgtgcctttgctttctctacgaactcatcgtacac 310
>gb|DN488090.1|DN488090 R032A09.3pR Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone V017A09 3', mRNA sequence
Length = 713
Score = 38.2 bits (19), Expect = 0.42
Identities = 80/99 (80%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 567 gtcgatctgaggcccctgttcgaccccgtccctgaaggggtcgccgacgacgcg-cttag 625
|||||||||||| || ||||| || || | | ||||||| ||||| || ||||| |||||
Sbjct: 577 gtcgatctgaggaccttgttcaacacccttcttgaagggatcgccaacaacgcgtcttag 636
Query: 626 ggcgcgggccttggacttctccacgaactcgtcgtacac 664
|| || ||||| | ||||| |||||||| ||||||||
Sbjct: 637 agcacgtgcctttgctttctctacgaactcatcgtacac 675
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 38,400
Number of Sequences: 369679
Number of extensions: 38400
Number of successful extensions: 9754
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9754
Number of HSP's gapped (non-prelim): 3
length of query: 679
length of database: 203,408,664
effective HSP length: 19
effective length of query: 660
effective length of database: 196,384,763
effective search space: 129613943580
effective search space used: 129613943580
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)