BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2621786.2.1
(623 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN549214.1|CN549214 GQ0242.B3_A02 GQ024 Populus trichoca... 56 2e-006
gb|CV233335.1|CV233335 WS0121.B21_P19 PT-GT-FL-A-3 Populus ... 56 2e-006
gb|CV235748.1|CV235748 WS01221.B21_G24 PT-GT-FL-A-3 Populus... 56 2e-006
gb|DT485561.1|DT485561 WS02528.B21_I22 PT-MB-N-A-15 Populus... 56 2e-006
gb|DT520008.1|DT520008 WS02446.B21.1_F02 PTxD-ICC-N-A-14 Po... 56 2e-006
gb|CF233488.1|CF233488 PtaJXO0024C10C1006 Poplar cDNA libra... 48 4e-004
gb|CV233514.1|CV233514 WS01211.B21_E21 PT-GT-FL-A-3 Populus... 48 4e-004
gb|DN487240.1|DN487240 Q021B05.3pR Populus dormant bud cDNA... 48 4e-004
gb|DT480318.1|DT480318 WS02528.BR_I22 PT-MB-N-A-15 Populus ... 44 0.006
gb|CV233728.1|CV233728 WS01212.B21_C12 PT-GT-FL-A-3 Populus... 42 0.025
gb|BP936849.1|BP936849 BP936849 full-length enriched poplar... 42 0.025
>gb|CN549214.1|CN549214 GQ0242.B3_A02 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0242_A02 5', mRNA sequence
Length = 675
Score = 56.0 bits (28), Expect = 2e-006
Identities = 91/112 (81%)
Strand = Plus / Plus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaac 71
|||| ||||| ||||| ||||| ||||| || ||||||||| | ||| |||||||||||
Sbjct: 100 gggattggggtttcgcaggggattacgtggaagcaatgtggatgatgttgcagcaggaaa 159
Query: 72 agccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagtt 123
|||| | |||||||| || || || |||||||| || || || ||||||||
Sbjct: 160 agcctgatgattacgtggttgcgacggaggagtcgcatacggtggaggagtt 211
Score = 42.1 bits (21), Expect = 0.025
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 288 agatgatggtcgatcacgacattgagctcgccaagaaggagaaggttctggtggatgctg 347
|||||||||| ||| | || ||||| | ||||||| |||||||||||| || |||||||
Sbjct: 376 agatgatggttgatgaagatattgatttagccaagagggagaaggttcttgttgatgctg 435
Query: 348 g 348
|
Sbjct: 436 g 436
>gb|CV233335.1|CV233335 WS0121.B21_P19 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0121_P19 3', mRNA sequence
Length = 677
Score = 56.0 bits (28), Expect = 2e-006
Identities = 91/112 (81%)
Strand = Plus / Minus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaac 71
|||| ||||| ||||| ||||| ||||| || ||||||||| | ||| |||||||||||
Sbjct: 586 gggattggggtttcgcaggggattacgtggaagcaatgtggatgatgttgcagcaggaaa 527
Query: 72 agccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagtt 123
|||| | |||||||| || || || |||||||| || || || ||||||||
Sbjct: 526 agcctgatgattacgtggttgcgacggaggagtcgcatacggtggaggagtt 475
Score = 42.1 bits (21), Expect = 0.025
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 288 agatgatggtcgatcacgacattgagctcgccaagaaggagaaggttctggtggatgctg 347
|||||||||| ||| | || ||||| | ||||||| |||||||||||| || |||||||
Sbjct: 310 agatgatggttgatgaagatattgatttagccaagagggagaaggttcttgttgatgctg 251
Query: 348 g 348
|
Sbjct: 250 g 250
>gb|CV235748.1|CV235748 WS01221.B21_G24 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01221_G24 3', mRNA sequence
Length = 609
Score = 56.0 bits (28), Expect = 2e-006
Identities = 91/112 (81%)
Strand = Plus / Minus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaac 71
|||| ||||| ||||| ||||| ||||| || ||||||||| | ||| |||||||||||
Sbjct: 590 gggattggggtttcgcaggggattacgtggaagcaatgtggatgatgttgcagcaggaaa 531
Query: 72 agccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagtt 123
|||| | |||||||| || || || |||||||| || || || ||||||||
Sbjct: 530 agcctgatgattacgtggttgcgacggaggagtcgcatacggtggaggagtt 479
Score = 42.1 bits (21), Expect = 0.025
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 288 agatgatggtcgatcacgacattgagctcgccaagaaggagaaggttctggtggatgctg 347
|||||||||| ||| | || ||||| | ||||||| |||||||||||| || |||||||
Sbjct: 314 agatgatggttgatgaagatattgatttagccaagagggagaaggttcttgttgatgctg 255
Query: 348 g 348
|
Sbjct: 254 g 254
>gb|DT485561.1|DT485561 WS02528.B21_I22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02528_I22 3', mRNA sequence
Length = 869
Score = 56.0 bits (28), Expect = 2e-006
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaac 71
|||| ||||| ||||| ||||| ||||| |||||||||||| | ||| |||||||||||
Sbjct: 529 gggattggggtttcgcaggggattacgtggaggcaatgtggatgatgttgcagcaggaaa 470
Query: 72 agcc 75
||||
Sbjct: 469 agcc 466
>gb|DT520008.1|DT520008 WS02446.B21.1_F02 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02446_F02 3', mRNA sequence
Length = 780
Score = 56.0 bits (28), Expect = 2e-006
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaac 71
|||| ||||| ||||| ||||| ||||| |||||||||||| | ||| |||||||||||
Sbjct: 573 gggattggggtttcgcaggggattacgtggaggcaatgtggatgatgttgcagcaggaaa 514
Query: 72 agcc 75
||||
Sbjct: 513 agcc 510
>gb|CF233488.1|CF233488 PtaJXO0024C10C1006 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 387
Score = 48.1 bits (24), Expect = 4e-004
Identities = 86/107 (80%)
Strand = Plus / Plus
Query: 17 tgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaacagccg 76
||||| ||||| ||| | ||||| || ||||||||| | ||| ||||||||||| ||||
Sbjct: 40 tggggtttcgcagggnattacgtggaagcaatgtggatgatgttgcagcaggaaaagcct 99
Query: 77 ggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagtt 123
| |||||||| || || || |||||||| || || || ||||||||
Sbjct: 100 gatgattacgtggttgcgacggaggagtcgcatacggtggaggagtt 146
Score = 40.1 bits (20), Expect = 0.098
Identities = 92/116 (79%)
Strand = Plus / Plus
Query: 233 aaggcgaggaaggtgctcaagtggaagcccaaggttgggttccaggagctcgtggagatg 292
||||||||||| ||||| |||||||| ||||| ||||| || | || ||| |||||
Sbjct: 256 aaggcgaggaaagtgcttggttggaagcctaaggtggggtttgagcaactggtgaagatg 315
Query: 293 atggtcgatcacgacattgagctcgccaagaaggagaaggttctggtggatgctgg 348
||||| ||| | || ||||| | || |||| |||||||||||| || ||||||||
Sbjct: 316 atggttgatgaagatattgatttagctaagagggagaaggttcttgttgatgctgg 371
>gb|CV233514.1|CV233514 WS01211.B21_E21 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01211_E21 3', mRNA sequence
Length = 653
Score = 48.1 bits (24), Expect = 4e-004
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaac 71
|||| ||||| ||||| || || ||||| |||||||||||| | ||| |||||||||||
Sbjct: 648 gggattggggtttcgcaggagattacgtggaggcaatgtggatgatgttgcagcaggaaa 589
Query: 72 agcc 75
||||
Sbjct: 588 agcc 585
>gb|DN487240.1|DN487240 Q021B05.3pR Populus dormant bud cDNA library Populus tremula cDNA
clone Q021B05 3', mRNA sequence
Length = 525
Score = 48.1 bits (24), Expect = 4e-004
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaac 71
|||| ||||| || || ||||| ||||| |||||||||||| | ||| |||||||||||
Sbjct: 432 gggattggggttttgcaggggattacgtggaggcaatgtggatgatgttgcagcaggaaa 373
Query: 72 agcc 75
||||
Sbjct: 372 agcc 369
>gb|DT480318.1|DT480318 WS02528.BR_I22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02528_I22 5', mRNA sequence
Length = 831
Score = 44.1 bits (22), Expect = 0.006
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagc 65
|||| ||||| ||||| ||||| ||||| |||||||||||| | ||| ||||||
Sbjct: 778 gggattggggtttcgcaggggattacgtggaggcaatgtggatgatgttgcagc 831
>gb|CV233728.1|CV233728 WS01212.B21_C12 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01212_C12 3', mRNA sequence
Length = 857
Score = 42.1 bits (21), Expect = 0.025
Identities = 75/93 (80%)
Strand = Plus / Minus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaac 71
|||| ||||| || || ||||| ||||| || ||||||||| | ||| |||||||||||
Sbjct: 598 gggattggggttttgcaggggattacgtggaagcaatgtggatgatgttgcagcaggaaa 539
Query: 72 agccgggggattacgtcgtcgccactgaggagt 104
|||| | |||||||| || || || |||||||
Sbjct: 538 agcctgatgattacgtggttgcgacggaggagt 506
>gb|BP936849.1|BP936849 BP936849 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-097_H16.r 3', mRNA sequence
Length = 585
Score = 42.1 bits (21), Expect = 0.025
Identities = 72/89 (80%)
Strand = Plus / Minus
Query: 35 tacgtcgaggcaatgtggctcatgctgcagcaggaacagccgggggattacgtcgtcgcc 94
||||| || ||||||||| | ||| ||||||||||| |||| | |||||||| || ||
Sbjct: 581 tacgtggaagcaatgtggatgatgttgcagcaggaaaagcctgatgattacgtggttgcg 522
Query: 95 actgaggagtcccacaccgtcgaggagtt 123
|| |||||||| || || || ||||||||
Sbjct: 521 acggaggagtcgcatacggtggaggagtt 493
Score = 42.1 bits (21), Expect = 0.025
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 288 agatgatggtcgatcacgacattgagctcgccaagaaggagaaggttctggtggatgctg 347
|||||||||| ||| | || ||||| | ||||||| |||||||||||| || |||||||
Sbjct: 328 agatgatggttgatgaagatattgatttagccaagagggagaaggttcttgttgatgctg 269
Query: 348 g 348
|
Sbjct: 268 g 268
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 72,274
Number of Sequences: 369679
Number of extensions: 72274
Number of successful extensions: 19768
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19730
Number of HSP's gapped (non-prelim): 36
length of query: 623
length of database: 203,408,664
effective HSP length: 19
effective length of query: 604
effective length of database: 196,384,763
effective search space: 118616396852
effective search space used: 118616396852
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)