BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594433.2.1
(766 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU831998.1|BU831998 T028C05 Populus apical shoot cDNA li... 44 0.008
gb|DN489856.1|DN489856 T086B12.3pR Populus shoot meristem c... 44 0.008
gb|DN499780.1|DN499780 T086B12.5pR Populus shoot meristem c... 44 0.008
gb|BU836407.1|BU836407 T086B12 Populus apical shoot cDNA li... 42 0.031
>gb|BU831998.1|BU831998 T028C05 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 653
Score = 44.1 bits (22), Expect = 0.008
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 690 ttgcaggtcttgcaagcacggtaccacatgttctggtcaggcttga 735
||||| ||||||||||| || |||||||| |||||||||| ||||
Sbjct: 242 ttgcacgtcttgcaagcccgataccacattgtctggtcaggtttga 197
>gb|DN489856.1|DN489856 T086B12.3pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T086B12 3', mRNA sequence
Length = 788
Score = 44.1 bits (22), Expect = 0.008
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 690 ttgcaggtcttgcaagcacggtaccacatgttctggtcaggcttga 735
||||| ||||||||||| || |||||||| |||||||||| ||||
Sbjct: 607 ttgcacgtcttgcaagcccgataccacattgtctggtcaggtttga 652
>gb|DN499780.1|DN499780 T086B12.5pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T086B12 5', mRNA sequence
Length = 752
Score = 44.1 bits (22), Expect = 0.008
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 690 ttgcaggtcttgcaagcacggtaccacatgttctggtcaggcttga 735
||||| ||||||||||| || |||||||| |||||||||| ||||
Sbjct: 259 ttgcacgtcttgcaagcccgataccacattgtctggtcaggtttga 214
>gb|BU836407.1|BU836407 T086B12 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 351
Score = 42.1 bits (21), Expect = 0.031
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 690 ttgcaggtcttgcaagcacggtaccacatgttctggtcagg 730
||||| ||||||||||| || |||||||| ||||||||||
Sbjct: 159 ttgcacgtcttgcaagcccgataccacattgtctggtcagg 119
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 81,014
Number of Sequences: 369679
Number of extensions: 81014
Number of successful extensions: 20746
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20739
Number of HSP's gapped (non-prelim): 7
length of query: 766
length of database: 203,408,664
effective HSP length: 19
effective length of query: 747
effective length of database: 196,384,763
effective search space: 146699417961
effective search space used: 146699417961
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)