BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594405.2.1
(637 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV244122.1|CV244122 WS0253.B21_M19 PT-MB-N-A-15 Populus ... 40 0.10
gb|BU895901.1|BU895901 X032G04 Populus wood cDNA library Po... 38 0.40
gb|CK087762.1|CK087762 A020P21.3pR Hybrid aspen plasmid lib... 38 0.40
gb|AY935501.1| Populus tremula x Populus tremuloides putati... 38 0.40
>gb|CV244122.1|CV244122 WS0253.B21_M19 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0253_M19 3', mRNA sequence
Length = 807
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 434 gcaggatgtgcaaatgcttc 453
||||||||||||||||||||
Sbjct: 725 gcaggatgtgcaaatgcttc 744
>gb|BU895901.1|BU895901 X032G04 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 621
Score = 38.2 bits (19), Expect = 0.40
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 304 cagccactcttgtttgagagcaaggta 330
||||||||||| ||| |||||||||||
Sbjct: 513 cagccactcttttttaagagcaaggta 487
>gb|CK087762.1|CK087762 A020P21.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A020P21 3', mRNA sequence
Length = 680
Score = 38.2 bits (19), Expect = 0.40
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 304 cagccactcttgtttgagagcaaggta 330
||||||||||| ||| |||||||||||
Sbjct: 353 cagccactcttttttaagagcaaggta 379
>gb|AY935501.1| Populus tremula x Populus tremuloides putative endo-1,4-beta-xylanase
mRNA, complete cds
Length = 3001
Score = 38.2 bits (19), Expect = 0.40
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 304 cagccactcttgtttgagagcaaggta 330
||||||||||| ||| |||||||||||
Sbjct: 2664 cagccactcttttttaagagcaaggta 2638
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 53,310
Number of Sequences: 369679
Number of extensions: 53310
Number of successful extensions: 13716
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13712
Number of HSP's gapped (non-prelim): 4
length of query: 637
length of database: 203,408,664
effective HSP length: 19
effective length of query: 618
effective length of database: 196,384,763
effective search space: 121365783534
effective search space used: 121365783534
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)