BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594211.2.1
(668 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI068323.1|BI068323 C020P28U Populus strain T89 leaves P... 48 4e-004
gb|BI070667.1|BI070667 C041P74U Populus strain T89 leaves P... 48 4e-004
gb|CA925535.1|CA925535 MTU7TL.P2.G08 Aspen leaf cDNA Librar... 48 4e-004
gb|CA930772.1|CA930772 MTU2TA.P10.A06 Aspen apex cDNA Libra... 48 4e-004
gb|CA931041.1|CA931041 MTU2TA.P1.C01 Aspen apex cDNA Librar... 48 4e-004
gb|CA931232.1|CA931232 MTU2TA.P4.D07 Aspen apex cDNA Librar... 48 4e-004
gb|CA932095.1|CA932095 MTU4TA.P26.G11 Aspen apex cDNA Libra... 48 4e-004
gb|CA933376.1|CA933376 MTU5CS.P7.B09 Aspen stem cDNA Librar... 48 4e-004
gb|CA934619.1|CA934619 MTU5TS.P21.D05 Aspen stem cDNA Libra... 48 4e-004
gb|CA934741.1|CA934741 MTU5TS.P23.B05 Aspen stem cDNA Libra... 48 4e-004
gb|CF119349.1|CF119349 MTU10CS.P16.G01 Aspen stem cDNA Libr... 48 4e-004
gb|CF119894.1|CF119894 MTU10CS.P7.F07 Aspen stem cDNA Libra... 48 4e-004
gb|CK088219.1|CK088219 A044P14.3pR Hybrid aspen plasmid lib... 48 4e-004
gb|AY435100.1| Populus tremula x Populus tremuloides alpha-... 48 4e-004
gb|CA931089.1|CA931089 MTU2TA.P1.H04 Aspen apex cDNA Librar... 44 0.007
gb|CB240458.1|CB240458 PopSC00443 Poplar SC cDNA library Po... 42 0.027
gb|CX658121.1|CX658121 PO01009F10 Poplar SC cDNA library Po... 42 0.027
gb|DT520342.1|DT520342 WS02447.B21_E17 PTxD-ICC-N-A-14 Popu... 42 0.027
gb|DV463768.1|DV463768 MTUNUL1.P2.B10 NUL Populus fremontii... 42 0.027
gb|AI161578.1|AI161578 A002P74U Hybrid aspen plasmid librar... 40 0.11
gb|AI165287.1|AI165287 A080P42U Hybrid aspen plasmid librar... 40 0.11
gb|CA923726.1|CA923726 MTU7CL.P14.B11 Aspen leaf cDNA Libra... 40 0.11
gb|CA930506.1|CA930506 MTU4CA.P23.D05 Aspen apex cDNA Libra... 40 0.11
gb|CA933853.1|CA933853 MTU3TS.P13.E07 Aspen stem cDNA Libra... 40 0.11
gb|CK089266.1|CK089266 B007P05.3pR Hybrid aspen plasmid lib... 40 0.11
gb|CV259380.1|CV259380 WS02011.B21_D08 PTxN-IB-N-A-11 Popul... 40 0.11
gb|CV265899.1|CV265899 WS02028.B21_I23 PTxN-IB-N-A-11 Popul... 40 0.11
gb|DT521517.1|DT521517 WS02034.B21_I03 PTxN-IB-N-A-11 Popul... 40 0.11
gb|DT526688.1|DT526688 WS02048.C21_L07 PTxN-IB-N-A-11 Popul... 40 0.11
gb|AY435099.1| Populus tremula x Populus tremuloides alpha-... 40 0.11
>gb|BI068323.1|BI068323 C020P28U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 392
Score = 48.1 bits (24), Expect = 4e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 620 gtgttgctctgccagttctggccccagt 647
||||||||||||||||| ||||||||||
Sbjct: 150 gtgttgctctgccagttttggccccagt 123
>gb|BI070667.1|BI070667 C041P74U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 384
Score = 48.1 bits (24), Expect = 4e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 620 gtgttgctctgccagttctggccccagt 647
||||||||||||||||| ||||||||||
Sbjct: 151 gtgttgctctgccagttttggccccagt 124
>gb|CA925535.1|CA925535 MTU7TL.P2.G08 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 546
Score = 48.1 bits (24), Expect = 4e-004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 620 gtgttgctctgccagttctggccccagt 647
||||||||||||||||| ||||||||||
Sbjct: 347 gtgttgctctgccagttttggccccagt 374
>gb|CA930772.1|CA930772 MTU2TA.P10.A06 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 516
Score = 48.1 bits (24), Expect = 4e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 620 gtgttgctctgccagttctggccccagt 647
||||||||||||||||| ||||||||||
Sbjct: 210 gtgttgctctgccagttttggccccagt 183
>gb|CA931041.1|CA931041 MTU2TA.P1.C01 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 560
Score = 48.1 bits (24), Expect = 4e-004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 620 gtgttgctctgccagttctggccccagt 647
||||||||||||||||| ||||||||||
Sbjct: 351 gtgttgctctgccagttttggccccagt 378
>gb|CA931232.1|CA931232 MTU2TA.P4.D07 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 471
Score = 48.1 bits (24), Expect = 4e-004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 620 gtgttgctctgccagttctggccccagt 647
||||||||||||||||| ||||||||||
Sbjct: 346 gtgttgctctgccagttttggccccagt 373
>gb|CA932095.1|CA932095 MTU4TA.P26.G11 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 506
Score = 48.1 bits (24), Expect = 4e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 620 gtgttgctctgccagttctggccccagt 647
||||||||||||||||| ||||||||||
Sbjct: 210 gtgttgctctgccagttttggccccagt 183
>gb|CA933376.1|CA933376 MTU5CS.P7.B09 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 605
Score = 48.1 bits (24), Expect = 4e-004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 620 gtgttgctctgccagttctggccccagt 647
||||||||||||||||| ||||||||||
Sbjct: 425 gtgttgctctgccagttttggccccagt 452
>gb|CA934619.1|CA934619 MTU5TS.P21.D05 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 496
Score = 48.1 bits (24), Expect = 4e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 620 gtgttgctctgccagttctggccccagt 647
||||||||||||||||| ||||||||||
Sbjct: 211 gtgttgctctgccagttttggccccagt 184
>gb|CA934741.1|CA934741 MTU5TS.P23.B05 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 546
Score = 48.1 bits (24), Expect = 4e-004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 620 gtgttgctctgccagttctggccccagt 647
||||||||||||||||| ||||||||||
Sbjct: 350 gtgttgctctgccagttttggccccagt 377
>gb|CF119349.1|CF119349 MTU10CS.P16.G01 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 782
Score = 48.1 bits (24), Expect = 4e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 620 gtgttgctctgccagttctggccccagt 647
||||||||||||||||| ||||||||||
Sbjct: 341 gtgttgctctgccagttttggccccagt 314
>gb|CF119894.1|CF119894 MTU10CS.P7.F07 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 617
Score = 48.1 bits (24), Expect = 4e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 620 gtgttgctctgccagttctggccccagt 647
||||||||||||||||| ||||||||||
Sbjct: 341 gtgttgctctgccagttttggccccagt 314
>gb|CK088219.1|CK088219 A044P14.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A044P14 3', mRNA sequence
Length = 731
Score = 48.1 bits (24), Expect = 4e-004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 620 gtgttgctctgccagttctggccccagt 647
||||||||||||||||| ||||||||||
Sbjct: 417 gtgttgctctgccagttttggccccagt 444
>gb|AY435100.1| Populus tremula x Populus tremuloides alpha-expansin 2 (Exp2) mRNA,
complete cds
Length = 1084
Score = 48.1 bits (24), Expect = 4e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 620 gtgttgctctgccagttctggccccagt 647
||||||||||||||||| ||||||||||
Sbjct: 687 gtgttgctctgccagttttggccccagt 660
>gb|CA931089.1|CA931089 MTU2TA.P1.H04 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 555
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 622 gttgctctgccagttctggccccagt 647
||||||||||||||| ||||||||||
Sbjct: 350 gttgctctgccagttttggccccagt 375
>gb|CB240458.1|CB240458 PopSC00443 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PopSC00443, mRNA sequence
Length = 476
Score = 42.1 bits (21), Expect = 0.027
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 623 ttgctctgccagttctggccccagt 647
||||| |||||||||||||||||||
Sbjct: 123 ttgctttgccagttctggccccagt 99
>gb|CX658121.1|CX658121 PO01009F10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01009F10 5', mRNA sequence
Length = 677
Score = 42.1 bits (21), Expect = 0.027
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 623 ttgctctgccagttctggccccagt 647
||||| |||||||||||||||||||
Sbjct: 391 ttgctttgccagttctggccccagt 367
>gb|DT520342.1|DT520342 WS02447.B21_E17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02447_E17 3', mRNA sequence
Length = 876
Score = 42.1 bits (21), Expect = 0.027
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 623 ttgctctgccagttctggccccagt 647
||||| |||||||||||||||||||
Sbjct: 493 ttgctttgccagttctggccccagt 517
>gb|DV463768.1|DV463768 MTUNUL1.P2.B10 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 862
Score = 42.1 bits (21), Expect = 0.027
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 623 ttgctctgccagttctggccccagt 647
||||| |||||||||||||||||||
Sbjct: 677 ttgctttgccagttctggccccagt 653
>gb|AI161578.1|AI161578 A002P74U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 577
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 628 ctgccagttctggccccagt 647
||||||||||||||||||||
Sbjct: 437 ctgccagttctggccccagt 418
>gb|AI165287.1|AI165287 A080P42U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 296
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 628 ctgccagttctggccccagt 647
||||||||||||||||||||
Sbjct: 166 ctgccagttctggccccagt 147
>gb|CA923726.1|CA923726 MTU7CL.P14.B11 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 556
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 628 ctgccagttctggccccagt 647
||||||||||||||||||||
Sbjct: 407 ctgccagttctggccccagt 426
>gb|CA930506.1|CA930506 MTU4CA.P23.D05 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 679
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 628 ctgccagttctggccccagt 647
||||||||||||||||||||
Sbjct: 409 ctgccagttctggccccagt 428
>gb|CA933853.1|CA933853 MTU3TS.P13.E07 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 640
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 628 ctgccagttctggccccagt 647
||||||||||||||||||||
Sbjct: 462 ctgccagttctggccccagt 443
>gb|CK089266.1|CK089266 B007P05.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B007P05 3', mRNA sequence
Length = 820
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 628 ctgccagttctggccccagt 647
||||||||||||||||||||
Sbjct: 523 ctgccagttctggccccagt 542
>gb|CV259380.1|CV259380 WS02011.B21_D08 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02011_D08 3', mRNA sequence
Length = 597
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 628 ctgccagttctggccccagt 647
||||||||||||||||||||
Sbjct: 537 ctgccagttctggccccagt 556
>gb|CV265899.1|CV265899 WS02028.B21_I23 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02028_I23 3', mRNA sequence
Length = 758
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 628 ctgccagttctggccccagt 647
||||||||||||||||||||
Sbjct: 536 ctgccagttctggccccagt 555
>gb|DT521517.1|DT521517 WS02034.B21_I03 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02034_I03 3', mRNA sequence
Length = 868
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 628 ctgccagttctggccccagt 647
||||||||||||||||||||
Sbjct: 537 ctgccagttctggccccagt 556
>gb|DT526688.1|DT526688 WS02048.C21_L07 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02048_L07 3', mRNA sequence
Length = 567
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 628 ctgccagttctggccccagt 647
||||||||||||||||||||
Sbjct: 53 ctgccagttctggccccagt 34
>gb|AY435099.1| Populus tremula x Populus tremuloides alpha-expansin 1 (Exp1) mRNA,
complete cds
Length = 1210
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 628 ctgccagttctggccccagt 647
||||||||||||||||||||
Sbjct: 694 ctgccagttctggccccagt 675
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 51,152
Number of Sequences: 369679
Number of extensions: 51152
Number of successful extensions: 13079
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13021
Number of HSP's gapped (non-prelim): 58
length of query: 668
length of database: 203,408,664
effective HSP length: 19
effective length of query: 649
effective length of database: 196,384,763
effective search space: 127453711187
effective search space used: 127453711187
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)