BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591368.2.1
(543 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU815772.1|BU815772 N046D07 Populus bark cDNA library Po... 38 0.34
gb|BU867014.1|BU867014 S073C11 Populus imbibed seed cDNA li... 38 0.34
gb|DN484947.1|DN484947 K041P18.3pR Populus apical shoot cDN... 38 0.34
>gb|BU815772.1|BU815772 N046D07 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 380
Score = 38.2 bits (19), Expect = 0.34
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 128 tctgtgtaatgtcaagctagcta 150
||||||||||| |||||||||||
Sbjct: 31 tctgtgtaatgccaagctagcta 53
>gb|BU867014.1|BU867014 S073C11 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 322
Score = 38.2 bits (19), Expect = 0.34
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 128 tctgtgtaatgtcaagctagcta 150
||||||||||| |||||||||||
Sbjct: 16 tctgtgtaatgccaagctagcta 38
>gb|DN484947.1|DN484947 K041P18.3pR Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA clone K041P18 3', mRNA sequence
Length = 652
Score = 38.2 bits (19), Expect = 0.34
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 128 tctgtgtaatgtcaagctagcta 150
||||||||||| |||||||||||
Sbjct: 637 tctgtgtaatgccaagctagcta 615
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 32,746
Number of Sequences: 369679
Number of extensions: 32746
Number of successful extensions: 8492
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8489
Number of HSP's gapped (non-prelim): 3
length of query: 543
length of database: 203,408,664
effective HSP length: 19
effective length of query: 524
effective length of database: 196,384,763
effective search space: 102905615812
effective search space used: 102905615812
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)