BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2591258.2.1
         (819 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CX654266.1|CX654266  PO02016E10 Poplar SC cDNA library Po...    46   0.002
dbj|AB000408.1|  Populus kitakamiensis mRNA for caffeoyl-CoA...    44   0.008

>gb|CX654266.1|CX654266 PO02016E10 Poplar SC cDNA library Populus alba x Populus tremula
           var. glandulosa cDNA clone PO02016E10 5', mRNA sequence
          Length = 394

 Score = 46.1 bits (23), Expect = 0.002
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 765 ctcgtgccgaattctgcaagcccgggg 791
           |||||||||||| ||||||||||||||
Sbjct: 63  ctcgtgccgaatcctgcaagcccgggg 37



>dbj|AB000408.1| Populus kitakamiensis mRNA for caffeoyl-CoA 3-O-methyltransferase,
           complete cds
          Length = 930

 Score = 44.1 bits (22), Expect = 0.008
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 419 cttgtccgcgtccacgaacgcgaagtcgaa 448
           ||||||||| ||||||||||| ||||||||
Sbjct: 513 cttgtccgcatccacgaacgcaaagtcgaa 484



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 62,109
Number of Sequences: 369679
Number of extensions: 62109
Number of successful extensions: 26869
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26867
Number of HSP's gapped (non-prelim): 2
length of query: 819
length of database: 203,408,664
effective HSP length: 19
effective length of query: 800
effective length of database: 196,384,763
effective search space: 157107810400
effective search space used: 157107810400
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)