BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2591131.2.1
         (596 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AI161578.1|AI161578  A002P74U Hybrid aspen plasmid librar...    44   0.006
gb|AI165287.1|AI165287  A080P42U Hybrid aspen plasmid librar...    44   0.006
gb|CA923726.1|CA923726  MTU7CL.P14.B11 Aspen leaf cDNA Libra...    44   0.006
gb|CA930506.1|CA930506  MTU4CA.P23.D05 Aspen apex cDNA Libra...    44   0.006
gb|CA933853.1|CA933853  MTU3TS.P13.E07 Aspen stem cDNA Libra...    44   0.006
gb|CB240458.1|CB240458  PopSC00443 Poplar SC cDNA library Po...    44   0.006
gb|CK089266.1|CK089266  B007P05.3pR Hybrid aspen plasmid lib...    44   0.006
gb|CV259380.1|CV259380  WS02011.B21_D08 PTxN-IB-N-A-11 Popul...    44   0.006
gb|CV265899.1|CV265899  WS02028.B21_I23 PTxN-IB-N-A-11 Popul...    44   0.006
gb|CX658121.1|CX658121  PO01009F10 Poplar SC cDNA library Po...    44   0.006
gb|DT520342.1|DT520342  WS02447.B21_E17 PTxD-ICC-N-A-14 Popu...    44   0.006
gb|DT521517.1|DT521517  WS02034.B21_I03 PTxN-IB-N-A-11 Popul...    44   0.006
gb|DT526688.1|DT526688  WS02048.C21_L07 PTxN-IB-N-A-11 Popul...    44   0.006
gb|DV463768.1|DV463768  MTUNUL1.P2.B10 NUL Populus fremontii...    44   0.006
gb|AY435099.1|  Populus tremula x Populus tremuloides alpha-...    44   0.006
>gb|AI161578.1|AI161578 A002P74U Hybrid aspen plasmid library Populus tremula x Populus
           tremuloides cDNA 5', mRNA sequence
          Length = 577

 Score = 44.1 bits (22), Expect = 0.006
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 317 actgccagttctggccccagtt 338
           ||||||||||||||||||||||
Sbjct: 438 actgccagttctggccccagtt 417
>gb|AI165287.1|AI165287 A080P42U Hybrid aspen plasmid library Populus tremula x Populus
           tremuloides cDNA 5', mRNA sequence
          Length = 296

 Score = 44.1 bits (22), Expect = 0.006
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 317 actgccagttctggccccagtt 338
           ||||||||||||||||||||||
Sbjct: 167 actgccagttctggccccagtt 146
>gb|CA923726.1|CA923726 MTU7CL.P14.B11 Aspen leaf cDNA Library Populus tremuloides cDNA,
           mRNA sequence
          Length = 556

 Score = 44.1 bits (22), Expect = 0.006
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 317 actgccagttctggccccagtt 338
           ||||||||||||||||||||||
Sbjct: 406 actgccagttctggccccagtt 427
>gb|CA930506.1|CA930506 MTU4CA.P23.D05 Aspen apex cDNA Library Populus tremuloides cDNA,
           mRNA sequence
          Length = 679

 Score = 44.1 bits (22), Expect = 0.006
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 317 actgccagttctggccccagtt 338
           ||||||||||||||||||||||
Sbjct: 408 actgccagttctggccccagtt 429
>gb|CA933853.1|CA933853 MTU3TS.P13.E07 Aspen stem cDNA Library Populus tremuloides cDNA,
           mRNA sequence
          Length = 640

 Score = 44.1 bits (22), Expect = 0.006
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 317 actgccagttctggccccagtt 338
           ||||||||||||||||||||||
Sbjct: 463 actgccagttctggccccagtt 442
>gb|CB240458.1|CB240458 PopSC00443 Poplar SC cDNA library Populus alba x Populus tremula
           var. glandulosa cDNA clone PopSC00443, mRNA sequence
          Length = 476

 Score = 44.1 bits (22), Expect = 0.006
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 319 tgccagttctggccccagttcc 340
           ||||||||||||||||||||||
Sbjct: 117 tgccagttctggccccagttcc 96
>gb|CK089266.1|CK089266 B007P05.3pR Hybrid aspen plasmid library Populus tremula x Populus
           tremuloides cDNA clone B007P05 3', mRNA sequence
          Length = 820

 Score = 44.1 bits (22), Expect = 0.006
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 317 actgccagttctggccccagtt 338
           ||||||||||||||||||||||
Sbjct: 522 actgccagttctggccccagtt 543
>gb|CV259380.1|CV259380 WS02011.B21_D08 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
           cDNA clone WS02011_D08 3', mRNA sequence
          Length = 597

 Score = 44.1 bits (22), Expect = 0.006
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 317 actgccagttctggccccagtt 338
           ||||||||||||||||||||||
Sbjct: 536 actgccagttctggccccagtt 557
>gb|CV265899.1|CV265899 WS02028.B21_I23 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
           cDNA clone WS02028_I23 3', mRNA sequence
          Length = 758

 Score = 44.1 bits (22), Expect = 0.006
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 317 actgccagttctggccccagtt 338
           ||||||||||||||||||||||
Sbjct: 535 actgccagttctggccccagtt 556
>gb|CX658121.1|CX658121 PO01009F10 Poplar SC cDNA library Populus alba x Populus tremula
           var. glandulosa cDNA clone PO01009F10 5', mRNA sequence
          Length = 677

 Score = 44.1 bits (22), Expect = 0.006
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 319 tgccagttctggccccagttcc 340
           ||||||||||||||||||||||
Sbjct: 385 tgccagttctggccccagttcc 364
>gb|DT520342.1|DT520342 WS02447.B21_E17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
           deltoides cDNA clone WS02447_E17 3', mRNA sequence
          Length = 876

 Score = 44.1 bits (22), Expect = 0.006
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 319 tgccagttctggccccagttcc 340
           ||||||||||||||||||||||
Sbjct: 499 tgccagttctggccccagttcc 520
>gb|DT521517.1|DT521517 WS02034.B21_I03 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
           cDNA clone WS02034_I03 3', mRNA sequence
          Length = 868

 Score = 44.1 bits (22), Expect = 0.006
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 317 actgccagttctggccccagtt 338
           ||||||||||||||||||||||
Sbjct: 536 actgccagttctggccccagtt 557
>gb|DT526688.1|DT526688 WS02048.C21_L07 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
           cDNA clone WS02048_L07 3', mRNA sequence
          Length = 567

 Score = 44.1 bits (22), Expect = 0.006
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 317 actgccagttctggccccagtt 338
           ||||||||||||||||||||||
Sbjct: 54  actgccagttctggccccagtt 33
>gb|DV463768.1|DV463768 MTUNUL1.P2.B10 NUL Populus fremontii x Populus angustifolia cDNA,
           mRNA sequence
          Length = 862

 Score = 44.1 bits (22), Expect = 0.006
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 319 tgccagttctggccccagttcc 340
           ||||||||||||||||||||||
Sbjct: 671 tgccagttctggccccagttcc 650
>gb|AY435099.1| Populus tremula x Populus tremuloides alpha-expansin 1 (Exp1) mRNA,
           complete cds
          Length = 1210

 Score = 44.1 bits (22), Expect = 0.006
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 317 actgccagttctggccccagtt 338
           ||||||||||||||||||||||
Sbjct: 695 actgccagttctggccccagtt 674
  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 34,312
Number of Sequences: 369679
Number of extensions: 34312
Number of successful extensions: 9169
Number of sequences better than  0.5: 15
Number of HSP's better than  0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9146
Number of HSP's gapped (non-prelim): 23
length of query: 596
length of database: 203,408,664
effective HSP length: 19
effective length of query: 577
effective length of database: 196,384,763
effective search space: 113314008251
effective search space used: 113314008251
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)