BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591032.2.1
(735 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI131092.1|BI131092 G115P15Y Populus cambium cDNA librar... 68 5e-010
gb|DT476893.1|DT476893 WS01231.B21_D17 PT-GT-FL-A-3 Populus... 62 3e-008
gb|DT482867.1|DT482867 WS02521.B21_A02 PT-MB-N-A-15 Populus... 60 1e-007
gb|BI129456.1|BI129456 G090P88Y Populus cambium cDNA librar... 58 5e-007
gb|BU836496.1|BU836496 T087C12 Populus apical shoot cDNA li... 58 5e-007
gb|DN499789.1|DN499789 T087C12.5pR Populus shoot meristem c... 58 5e-007
gb|BP933399.1|BP933399 BP933399 full-length enriched poplar... 56 2e-006
gb|DN489864.1|DN489864 T087C12.3pR Populus shoot meristem c... 56 2e-006
gb|CV232433.1|CV232433 WS0197.B21_J03 PT-DX-N-A-10 Populus ... 52 3e-005
gb|DT485334.1|DT485334 WS02527.B21_O22 PT-MB-N-A-15 Populus... 52 3e-005
gb|DT515685.1|DT515685 WS02429.B21.1_D22 PTxD-ICC-N-A-14 Po... 52 3e-005
gb|DT523539.1|DT523539 WS02039.B21_P11 PTxN-IB-N-A-11 Popul... 52 3e-005
gb|CV233282.1|CV233282 WS0121.B21_J05 PT-GT-FL-A-3 Populus ... 50 1e-004
gb|AI162152.1|AI162152 A012P77U Hybrid aspen plasmid librar... 48 5e-004
gb|CK098382.1|CK098382 A012P77.5pR Hybrid aspen plasmid lib... 48 5e-004
gb|CV261322.1|CV261322 WS02016.B21_H12 PTxN-IB-N-A-11 Popul... 46 0.002
gb|DT507221.1|DT507221 WS02417.BR_K22 PTxD-ICC-N-A-14 Popul... 46 0.002
gb|DT511863.1|DT511863 WS02417.B21_K22 PTxD-ICC-N-A-14 Popu... 46 0.002
gb|BI119621.1|BI119621 F002P40Y Populus flower cDNA library... 44 0.007
gb|DN494990.1|DN494990 N009H07.5pR Populus bark cDNA librar... 44 0.007
gb|CA931263.1|CA931263 MTU2TA.P4.H08 Aspen apex cDNA Librar... 42 0.029
gb|CN523462.1|CN523462 GQ015M10.T3_B08 GQ015 Populus tricho... 42 0.029
gb|DN489293.1|DN489293 T021A10.3pR Populus shoot meristem c... 42 0.029
gb|DT520021.1|DT520021 WS02446.B21.1_F15 PTxD-ICC-N-A-14 Po... 42 0.029
gb|BU813391.1|BU813391 N009H07 Populus bark cDNA library Po... 38 0.46
>gb|BI131092.1|BI131092 G115P15Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 150
Score = 67.9 bits (34), Expect = 5e-010
Identities = 94/114 (82%)
Strand = Plus / Minus
Query: 622 gtccaccagtcgacggcgctgccatggccctcgcctttgatgatctcgggggccaggtac 681
|||||||| ||||| || || ||||| || || || ||||||||||| || ||||| |||
Sbjct: 149 gtccaccaatcgacagcacttccatgaccttcacccttgatgatctcaggagccagatac 90
Query: 682 tcgtgcgtcccaacgaacgacatcgaccgtgcgtcgctgggctctgctatgagc 735
||||| |||||||| |||||||| |||| ||| || | |||||||| ||||||
Sbjct: 89 tcgtgggtcccaacaaacgacattgaccttgcatcagttggctctgccatgagc 36
>gb|DT476893.1|DT476893 WS01231.B21_D17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01231_D17 3', mRNA sequence
Length = 992
Score = 61.9 bits (31), Expect = 3e-008
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 622 gtccaccagtcgacggcgctgccatggccctcgcctttgatgatctcgggggccaggta 680
|||||||| || || || |||||||| ||||| |||||||||||||| |||||||||||
Sbjct: 557 gtccaccaatcaacagcactgccatgcccctcacctttgatgatctcaggggccaggta 615
>gb|DT482867.1|DT482867 WS02521.B21_A02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02521_A02 3', mRNA sequence
Length = 749
Score = 60.0 bits (30), Expect = 1e-007
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 658 ttgatgatctcgggggccaggtactcgtgcgtcccaacgaacgacatcgaccgtgcgtcg 717
||||||||||| || ||||| |||||||| |||||||| |||||||| |||| ||| ||
Sbjct: 586 ttgatgatctcaggagccagatactcgtgggtcccaacaaacgacattgaccttgcatca 645
Query: 718 ctgggctctgctatgagc 735
| |||||||| ||||||
Sbjct: 646 gttggctctgccatgagc 663
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 379 gcccaattcacgccctcaaagaagggatgctgctt 413
||||||||||| || |||||||||||||| |||||
Sbjct: 307 gcccaattcacaccttcaaagaagggatgttgctt 341
>gb|BI129456.1|BI129456 G090P88Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 520
Score = 58.0 bits (29), Expect = 5e-007
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 616 ccgaaggtccaccagtcgacggcgctgccatggccctcgcctttgatgatctcgggggcc 675
||||| |||||||| || || || |||||||| ||||| |||||||||||||| || |||
Sbjct: 441 ccgaatgtccaccaatcaacagcactgccatgaccctcacctttgatgatctctggagcc 382
Query: 676 aggta 680
|||||
Sbjct: 381 aggta 377
>gb|BU836496.1|BU836496 T087C12 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 724
Score = 58.0 bits (29), Expect = 5e-007
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 643 ccatggccctcgcctttgatgatctcgggggccaggtactcgtgcgtcccaac 695
||||||||||| |||||||| ||||| ||||||||||| || || ||||||||
Sbjct: 443 ccatggccctctcctttgataatctcaggggccaggtattcatgggtcccaac 391
Score = 56.0 bits (28), Expect = 2e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 372 tatgagcgcccaattcacgccctcaaagaagggatgctgcttgatctc 419
|||||| |||||||||| |||||||||||| || || |||||||||||
Sbjct: 714 tatgagtgcccaattcaagccctcaaagaaagggtgttgcttgatctc 667
>gb|DN499789.1|DN499789 T087C12.5pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T087C12 5', mRNA sequence
Length = 852
Score = 58.0 bits (29), Expect = 5e-007
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 643 ccatggccctcgcctttgatgatctcgggggccaggtactcgtgcgtcccaac 695
||||||||||| |||||||| ||||| ||||||||||| || || ||||||||
Sbjct: 442 ccatggccctctcctttgataatctcaggggccaggtattcatgggtcccaac 390
Score = 56.0 bits (28), Expect = 2e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 372 tatgagcgcccaattcacgccctcaaagaagggatgctgcttgatctc 419
|||||| |||||||||| |||||||||||| || || |||||||||||
Sbjct: 715 tatgagtgcccaattcaagccctcaaagaaagggtgttgcttgatctc 668
>gb|BP933399.1|BP933399 BP933399 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-050_O04.r 3', mRNA sequence
Length = 652
Score = 56.0 bits (28), Expect = 2e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 372 tatgagcgcccaattcacgccctcaaagaagggatgctgcttgatctc 419
|||||| |||||||||| |||||||||||| || || |||||||||||
Sbjct: 458 tatgagtgcccaattcaagccctcaaagaaagggtgttgcttgatctc 505
>gb|DN489864.1|DN489864 T087C12.3pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T087C12 3', mRNA sequence
Length = 517
Score = 56.0 bits (28), Expect = 2e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 372 tatgagcgcccaattcacgccctcaaagaagggatgctgcttgatctc 419
|||||| |||||||||| |||||||||||| || || |||||||||||
Sbjct: 355 tatgagtgcccaattcaagccctcaaagaaagggtgttgcttgatctc 402
>gb|CV232433.1|CV232433 WS0197.B21_J03 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0197_J03 3', mRNA sequence
Length = 745
Score = 52.0 bits (26), Expect = 3e-005
Identities = 92/114 (80%)
Strand = Plus / Plus
Query: 622 gtccaccagtcgacggcgctgccatggccctcgcctttgatgatctcgggggccaggtac 681
||||||||||| || || || ||||| || || || ||||||||||| || |||| |||
Sbjct: 567 gtccaccagtcaacagcacttccatgaccttcacccttgatgatctcaggtgccaaatac 626
Query: 682 tcgtgcgtcccaacgaacgacatcgaccgtgcgtcgctgggctctgctatgagc 735
||||| || ||||| || ||||| |||| ||| || | |||||||||||||||
Sbjct: 627 tcgtgggttccaacaaaagacattgaccttgcatctgttggctctgctatgagc 680
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 379 gcccaattcacgccctcaaagaagggatgctgctt 413
|||||||||||||| ||||||||||| || |||||
Sbjct: 324 gcccaattcacgccttcaaagaaggggtgttgctt 358
>gb|DT485334.1|DT485334 WS02527.B21_O22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02527_O22 3', mRNA sequence
Length = 904
Score = 52.0 bits (26), Expect = 3e-005
Identities = 92/114 (80%)
Strand = Plus / Plus
Query: 622 gtccaccagtcgacggcgctgccatggccctcgcctttgatgatctcgggggccaggtac 681
||||||||||| || || || ||||| || || || ||||||||||| || |||| |||
Sbjct: 519 gtccaccagtcaacagcacttccatgaccttcacccttgatgatctcaggtgccaaatac 578
Query: 682 tcgtgcgtcccaacgaacgacatcgaccgtgcgtcgctgggctctgctatgagc 735
||||| || ||||| || ||||| |||| ||| || | |||||||||||||||
Sbjct: 579 tcgtgggttccaacaaaagacattgaccttgcatctgttggctctgctatgagc 632
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 379 gcccaattcacgccctcaaagaagggatgctgctt 413
|||||||||||||| ||||||||||| || |||||
Sbjct: 276 gcccaattcacgccttcaaagaaggggtgttgctt 310
>gb|DT515685.1|DT515685 WS02429.B21.1_D22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_D22 3', mRNA sequence
Length = 894
Score = 52.0 bits (26), Expect = 3e-005
Identities = 92/114 (80%)
Strand = Plus / Plus
Query: 622 gtccaccagtcgacggcgctgccatggccctcgcctttgatgatctcgggggccaggtac 681
||||||||||| || || || ||||| || || || ||||||||||| || |||| |||
Sbjct: 513 gtccaccagtcaacagcacttccatgaccttcacccttgatgatctcaggtgccaaatac 572
Query: 682 tcgtgcgtcccaacgaacgacatcgaccgtgcgtcgctgggctctgctatgagc 735
||||| || ||||| || ||||| |||| ||| || | |||||||||||||||
Sbjct: 573 tcgtgggttccaacaaaagacattgaccttgcatctgttggctctgctatgagc 626
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 379 gcccaattcacgccctcaaagaagggatgctgctt 413
|||||||||||||| ||||||||||| || |||||
Sbjct: 270 gcccaattcacgccttcaaagaaggggtgttgctt 304
>gb|DT523539.1|DT523539 WS02039.B21_P11 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02039_P11 3', mRNA sequence
Length = 925
Score = 52.0 bits (26), Expect = 3e-005
Identities = 92/114 (80%)
Strand = Plus / Plus
Query: 622 gtccaccagtcgacggcgctgccatggccctcgcctttgatgatctcgggggccaggtac 681
||||||||||| || || || ||||| || || || ||||||||||| || |||| |||
Sbjct: 591 gtccaccagtcaacagcacttccatgaccttcacccttgatgatctcaggtgccaaatac 650
Query: 682 tcgtgcgtcccaacgaacgacatcgaccgtgcgtcgctgggctctgctatgagc 735
||||| || ||||| || ||||| |||| ||| || | |||||||||||||||
Sbjct: 651 tcgtgggttccaacaaaagacattgaccttgcatctgttggctctgctatgagc 704
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 379 gcccaattcacgccctcaaagaagggatgctgctt 413
|||||||||||||| ||||||||||| || |||||
Sbjct: 348 gcccaattcacgccttcaaagaaggggtgttgctt 382
>gb|CV233282.1|CV233282 WS0121.B21_J05 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0121_J05 3', mRNA sequence
Length = 539
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 379 gcccaattcacgccctcaaagaagggatgctgcttgatctc 419
||||||||||| | |||||||| |||||||||||||||||
Sbjct: 427 gcccaattcacactttcaaagaaaggatgctgcttgatctc 467
>gb|AI162152.1|AI162152 A012P77U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 481
Score = 48.1 bits (24), Expect = 5e-004
Identities = 96/120 (80%)
Strand = Plus / Minus
Query: 570 tcccttgaaaggcgtcttcccgaacagcagctcgtacaagaataccccgaaggtccacca 629
|||||||||||| || || || |||| ||||| || | |||| ||| || ||||||||
Sbjct: 271 tcccttgaaaggagttttaccaaacaaaagctcatagagaaatatcccaaatgtccacca 212
Query: 630 gtcgacggcgctgccatggccctcgcctttgatgatctcgggggccaggtactcgtgcgt 689
|| || || || ||||||||||||||||| || || || ||||||| |||||| |||||
Sbjct: 211 atctacagcacttccatggccctcgcctttaattatttcaggggccaagtactcatgcgt 152
>gb|CK098382.1|CK098382 A012P77.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A012P77 5', mRNA sequence
Length = 614
Score = 48.1 bits (24), Expect = 5e-004
Identities = 99/124 (79%)
Strand = Plus / Minus
Query: 570 tcccttgaaaggcgtcttcccgaacagcagctcgtacaagaataccccgaaggtccacca 629
|||||||||||| || || || |||| ||||| || | |||| ||| || ||||||||
Sbjct: 292 tcccttgaaaggagttttaccaaacaaaagctcatagagaaatatcccaaatgtccacca 233
Query: 630 gtcgacggcgctgccatggccctcgcctttgatgatctcgggggccaggtactcgtgcgt 689
|| || || || ||||||||||||||||| || || || ||||||| |||||| ||||
Sbjct: 232 atctacagcacttccatggccctcgcctttaattatttcaggggccaagtactcatgcga 173
Query: 690 ccca 693
||||
Sbjct: 172 ccca 169
Score = 42.1 bits (21), Expect = 0.029
Identities = 87/109 (79%)
Strand = Plus / Minus
Query: 373 atgagcgcccaattcacgccctcaaagaagggatgctgcttgatctccgtggctccacgc 432
||||| |||||||| | || || |||||| |||||||| || || || |||||||| ||
Sbjct: 489 atgagtgcccaattgatgctctgaaagaatggatgctgttttatttcagtggctccccgt 430
Query: 433 ttgtaggccagccgttgctggggctccttcacaagcagacccctgatca 481
|||| || || || ||||| ||||||||||| || | ||| |||||||
Sbjct: 429 ctgtaagcaagacgatgctgcggctccttcacgagtaaacctctgatca 381
>gb|CV261322.1|CV261322 WS02016.B21_H12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02016_H12 3', mRNA sequence
Length = 844
Score = 46.1 bits (23), Expect = 0.002
Identities = 93/115 (80%), Gaps = 1/115 (0%)
Strand = Plus / Plus
Query: 622 gtccaccagtcgacggcgctgccatggccctcgcctttgatgatctcgggggccaggtac 681
||||||||||| || || || ||||| || || || ||||||||||| || |||| |||
Sbjct: 598 gtccaccagtcaacagcacttccatgaccttcacccttgatgatctcaggtgccaaatac 657
Query: 682 tcgtgcgtcccaacgaacgacatcgaccgtgcgtcgctg-ggctctgctatgagc 735
||||| || ||||| || ||||| |||| ||| || || |||||||||||||||
Sbjct: 658 tcgtgggttccaacaaaagacattgaccttgcatctgtgtggctctgctatgagc 712
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 379 gcccaattcacgccctcaaagaagggatgctgctt 413
|||||||||||||| ||||||||||| || |||||
Sbjct: 355 gcccaattcacgccttcaaagaaggggtgttgctt 389
>gb|DT507221.1|DT507221 WS02417.BR_K22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_K22 5', mRNA sequence
Length = 644
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 379 gcccaattcacgccctcaaagaagggatgctgctt 413
|||||||||||||| ||||||||||| || |||||
Sbjct: 308 gcccaattcacgccttcaaagaaggggtgttgctt 274
Score = 40.1 bits (20), Expect = 0.12
Identities = 53/64 (82%)
Strand = Plus / Minus
Query: 530 gctggccaatgacattgaacagcgtggcccggttgctggatcccttgaaaggcgtcttcc 589
||||||||| |||||||||| ||||| ||||| | ||||||||||| || || ||||
Sbjct: 157 gctggccaacaacattgaacaatgtggctcggtttccagatcccttgaagggagttttcc 98
Query: 590 cgaa 593
||||
Sbjct: 97 cgaa 94
>gb|DT511863.1|DT511863 WS02417.B21_K22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_K22 3', mRNA sequence
Length = 644
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 379 gcccaattcacgccctcaaagaagggatgctgctt 413
|||||||||||||| ||||||||||| || |||||
Sbjct: 337 gcccaattcacgccttcaaagaaggggtgttgctt 371
Score = 40.1 bits (20), Expect = 0.12
Identities = 53/64 (82%)
Strand = Plus / Plus
Query: 530 gctggccaatgacattgaacagcgtggcccggttgctggatcccttgaaaggcgtcttcc 589
||||||||| |||||||||| ||||| ||||| | ||||||||||| || || ||||
Sbjct: 488 gctggccaacaacattgaacaatgtggctcggtttccagatcccttgaagggagttttcc 547
Query: 590 cgaa 593
||||
Sbjct: 548 cgaa 551
>gb|BI119621.1|BI119621 F002P40Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 397
Score = 44.1 bits (22), Expect = 0.007
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 658 ttgatgatctcgggggccaggtactcgtgcgtcccaacgaacgacatcgaccgtgcgtcg 717
||||||||||| || |||| |||||||| || ||||| || ||||| |||| ||| ||
Sbjct: 367 ttgatgatctcaggtgccaaatactcgtgggttccaacaaaagacattgaccttgcatct 308
Query: 718 ctgggctctgctatgagc 735
| |||||||||||||||
Sbjct: 307 gttggctctgctatgagc 290
>gb|DN494990.1|DN494990 N009H07.5pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N009H07 5', mRNA sequence
Length = 760
Score = 44.1 bits (22), Expect = 0.007
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 379 gcccaattcacgccctcaaagaagggatgctgcttgat 416
||||||||||| | |||||||| ||||||||||||||
Sbjct: 605 gcccaattcacactttcaaagaaaggatgctgcttgat 568
Score = 38.2 bits (19), Expect = 0.46
Identities = 49/59 (83%)
Strand = Plus / Minus
Query: 622 gtccaccagtcgacggcgctgccatggccctcgcctttgatgatctcgggggccaggta 680
|||||||| || || || ||||||||||| || || ||||| || || |||||||||||
Sbjct: 362 gtccaccaatcaactgcactgccatggccttctcccttgataatttcaggggccaggta 304
>gb|CA931263.1|CA931263 MTU2TA.P4.H08 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 491
Score = 42.1 bits (21), Expect = 0.029
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 379 gcccaattcacgccctcaaagaagggatgctgcttgatctc 419
||||||||||| || |||||||| || ||||||| ||||||
Sbjct: 308 gcccaattcacaccttcaaagaaagggtgctgctagatctc 268
Score = 38.2 bits (19), Expect = 0.46
Identities = 49/59 (83%)
Strand = Plus / Minus
Query: 622 gtccaccagtcgacggcgctgccatggccctcgcctttgatgatctcgggggccaggta 680
|||||||| || || || |||||||| || || || |||||||| || |||||||||||
Sbjct: 65 gtccaccaatcaactgcactgccatgcccttctcccttgatgatttcaggggccaggta 7
>gb|CN523462.1|CN523462 GQ015M10.T3_B08 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M10_B08 5', mRNA sequence
Length = 732
Score = 42.1 bits (21), Expect = 0.029
Identities = 87/109 (79%)
Strand = Plus / Minus
Query: 373 atgagcgcccaattcacgccctcaaagaagggatgctgcttgatctccgtggctccacgc 432
|||||||||||||| | || || |||||| |||||||| || || || |||||||| ||
Sbjct: 342 atgagcgcccaattgatgctctgaaagaatggatgctgttttatttcagtggctccccgt 283
Query: 433 ttgtaggccagccgttgctggggctccttcacaagcagacccctgatca 481
| || || || || ||||| ||||||||||| || | ||| |||||||
Sbjct: 282 ctataagcaagacgatgctgtggctccttcacgagtaaacctctgatca 234
>gb|DN489293.1|DN489293 T021A10.3pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T021A10 3', mRNA sequence
Length = 695
Score = 42.1 bits (21), Expect = 0.029
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 600 ctcgtacaagaataccccgaaggtccaccagtcgacggcgctgccatggccct 652
|||||||||||| ||||| | |||||||| || || ||||| ||||||||||
Sbjct: 387 ctcgtacaagaacaccccaagagtccaccaatccaccgcgcttccatggccct 439
>gb|DT520021.1|DT520021 WS02446.B21.1_F15 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02446_F15 3', mRNA sequence
Length = 911
Score = 42.1 bits (21), Expect = 0.029
Identities = 87/109 (79%)
Strand = Plus / Plus
Query: 373 atgagcgcccaattcacgccctcaaagaagggatgctgcttgatctccgtggctccacgc 432
|||||||||||||| | || || |||||| |||||||| || || || |||||||| ||
Sbjct: 702 atgagcgcccaattgatgctctgaaagaatggatgctgttttatttcagtggctccccgt 761
Query: 433 ttgtaggccagccgttgctggggctccttcacaagcagacccctgatca 481
| || || || || ||||| ||||||||||| || | ||| |||||||
Sbjct: 762 ctataagcaagacgatgctgtggctccttcacgagtaaacctctgatca 810
>gb|BU813391.1|BU813391 N009H07 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 386
Score = 38.2 bits (19), Expect = 0.46
Identities = 49/59 (83%)
Strand = Plus / Minus
Query: 622 gtccaccagtcgacggcgctgccatggccctcgcctttgatgatctcgggggccaggta 680
|||||||| || || || ||||||||||| || || ||||| || || |||||||||||
Sbjct: 358 gtccaccaatcaactgcactgccatggccttctcccttgataatttcaggggccaggta 300
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 73,917
Number of Sequences: 369679
Number of extensions: 73917
Number of successful extensions: 20343
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20283
Number of HSP's gapped (non-prelim): 57
length of query: 735
length of database: 203,408,664
effective HSP length: 19
effective length of query: 716
effective length of database: 196,384,763
effective search space: 140611490308
effective search space used: 140611490308
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)