BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2576652.2.5
(1033 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF230499.1|CF230499 PtaC0009B1B0103 Poplar cDNA library ... 180 7e-044
gb|CX656534.1|CX656534 PO01001H06 Poplar SC cDNA library Po... 180 7e-044
gb|CX659830.1|CX659830 PO01014F08 Poplar SC cDNA library Po... 180 7e-044
gb|CV248165.1|CV248165 WS0112.B21_K08 PT-P-FL-A-2 Populus t... 172 2e-041
gb|CV280249.1|CV280249 WS0135.B21_I10 PTxD-IL-FL-A-4 Populu... 172 2e-041
gb|DT495186.1|DT495186 WS0112.BR_K08 PT-P-FL-A-2 Populus tr... 172 2e-041
gb|DT503117.1|DT503117 WS0135.BR_I10 PTxD-IL-FL-A-4 Populus... 172 2e-041
gb|DT522032.1|DT522032 WS02035.B21_N23 PTxN-IB-N-A-11 Popul... 167 1e-039
gb|CA927691.1|CA927691 MTU6TR.P11.H03 Aspen root cDNA Libra... 165 4e-039
gb|CA930004.1|CA930004 MTU2CA.P5.G10 Aspen apex cDNA Librar... 165 4e-039
gb|BU867813.1|BU867813 M104F09 Populus flower cDNA library ... 141 6e-032
gb|CF936266.1|CF936266 PO3003H11 Populus tomentiglandulosa ... 141 6e-032
gb|CF936786.1|CF936786 PO3010C06 Populus tomentiglandulosa ... 141 6e-032
gb|CF936909.1|CF936909 PO3011H07 Populus tomentiglandulosa ... 141 6e-032
gb|DT498845.1|DT498845 WS0116.BR_I10 PT-P-FL-A-2 Populus tr... 141 6e-032
gb|BU868261.1|BU868261 M113C06 Populus flower cDNA library ... 133 1e-029
gb|CK092595.1|CK092595 G088P73.3pR Populus tension wood cDN... 133 1e-029
gb|CV237475.1|CV237475 WS01227.B21_J17 PT-GT-FL-A-3 Populus... 133 1e-029
gb|CX169168.1|CX169168 G01_69-98_13.ab1 leaf inoculated wit... 133 1e-029
gb|DT472727.1|DT472727 WS01227.BR.1_J17 PT-GT-FL-A-3 Populu... 133 1e-029
gb|DT477434.1|DT477434 WS02519.BR_O22 PT-MB-N-A-15 Populus ... 133 1e-029
gb|DT482477.1|DT482477 WS02519.B21_O22 PT-MB-N-A-15 Populus... 133 1e-029
gb|DT526178.1|DT526178 WS02047.C21_F08 PTxN-IB-N-A-11 Popul... 131 6e-029
gb|CV260260.1|CV260260 WS02013.B21_J12 PTxN-IB-N-A-11 Popul... 129 2e-028
gb|CK099644.1|CK099644 A079P11.5pR Hybrid aspen plasmid lib... 117 9e-025
gb|DT499856.1|DT499856 WS9991.BR_I17 PT-P-FL-A-2 Populus tr... 105 3e-021
gb|AI165230.1|AI165230 A079P11U Hybrid aspen plasmid librar... 86 3e-015
gb|CV267552.1|CV267552 WS02032.B21_A22 PTxN-IB-N-A-11 Popul... 52 4e-005
gb|CV226677.1|CV226677 WS0164.B21_P10 PT-DX-A-7 Populus tri... 48 7e-004
gb|CV257768.1|CV257768 WS0247.B21_J18 PTxD-ICC-N-A-14 Popul... 46 0.003
gb|DT520738.1|DT520738 WS02448.B21_G12 PTxD-ICC-N-A-14 Popu... 46 0.003
gb|CV254802.1|CV254802 WS02411.B21_D15 PTxD-ICC-N-A-14 Popu... 42 0.042
gb|DT515959.1|DT515959 WS02430.B21_A02 PTxD-ICC-N-A-14 Popu... 42 0.042
gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and... 40 0.16
gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Librar... 40 0.16
gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Libr... 40 0.16
>gb|CF230499.1|CF230499 PtaC0009B1B0103 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 748
Score = 180 bits (91), Expect = 7e-044
Identities = 211/251 (84%)
Strand = Plus / Minus
Query: 457 cccataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcc 516
||||| |||||||| |||| ||||||||||| || || |||||||| || | |||||||
Sbjct: 462 cccatgatgtggtgccgctgaagccaaagctgcccttgagcatataaaagcctgtcatcc 403
Query: 517 ccaaaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatgg 576
||| |||| || || ||||| ||||||| || ||||| |||| || || | |||||||
Sbjct: 402 ccataattgttatctccttttgtgaggacatcaacttccccagtatcttgcctttcatgg 343
Query: 577 accttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatt 636
||||||||||| || |||||||||||||| ||||||||||| ||||| |||||||| |||
Sbjct: 342 accttaatcacacgatggacaattggaatttcacgaccatcaacattaaaaacaacaatt 283
Query: 637 tctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaat 696
|||||||||| |||||||||||| ||||| ||||| |||| ||||||||||| || ||
Sbjct: 282 tctcctgtgcaaataggatctttactcatgtgcaagaacaaaatatcacccctcttgaag 223
Query: 697 ccaggctccat 707
||||| |||||
Sbjct: 222 ccaggttccat 212
>gb|CX656534.1|CX656534 PO01001H06 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01001H06 5', mRNA sequence
Length = 717
Score = 180 bits (91), Expect = 7e-044
Identities = 211/251 (84%)
Strand = Plus / Minus
Query: 457 cccataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcc 516
||||| |||||||| |||| ||||||||||| || || |||||||| || | |||||||
Sbjct: 492 cccatgatgtggtgccgctgaagccaaagctgcccttgggcatataaaagcctgtcatcc 433
Query: 517 ccaaaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatgg 576
||| |||| || || ||||| ||||||| || ||||| |||| || || | |||||||
Sbjct: 432 ccataattgttatctccttttgtgaggacatcaacttccccagtatcttgcctttcatgg 373
Query: 577 accttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatt 636
||||||||||| || |||||||||||||| ||||||||||| ||||| |||||||| |||
Sbjct: 372 accttaatcacacgatggacaattggaatttcacgaccatcaacattaaaaacaacaatt 313
Query: 637 tctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaat 696
||||||||||||||||||||||| ||||| ||||| |||| || |||||||| || ||
Sbjct: 312 tctcctgtgcgaataggatctttactcatgtgcaagaacaaaatgtcacccctcttgaag 253
Query: 697 ccaggctccat 707
||||| |||||
Sbjct: 252 ccaggttccat 242
>gb|CX659830.1|CX659830 PO01014F08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01014F08 5', mRNA sequence
Length = 694
Score = 180 bits (91), Expect = 7e-044
Identities = 211/251 (84%)
Strand = Plus / Minus
Query: 457 cccataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcc 516
||||| |||||||| |||| ||||||||||| || || |||||||| || | |||||||
Sbjct: 425 cccatgatgtggtgccgctgaagccaaagctgcccttgagcatataaaagcctgtcatcc 366
Query: 517 ccaaaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatgg 576
||| |||| || || ||||| ||||||| || ||||| |||| || || | |||||||
Sbjct: 365 ccataattgttatctccttttgtgaggacatcaacttccccagtatcttgcctttcatgg 306
Query: 577 accttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatt 636
||||||||||| || |||||||||||||| ||||||||||| ||||| |||||||| |||
Sbjct: 305 accttaatcacacgatggacaattggaatttcacgaccatcaacattaaaaacaacaatt 246
Query: 637 tctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaat 696
||||||| ||||||||||||||||||||| ||||| |||| || |||||||| || ||
Sbjct: 245 tctcctgagcgaataggatctttgctcatgtgcaagaacaaaatgtcacccctcttgaag 186
Query: 697 ccaggctccat 707
||||| |||||
Sbjct: 185 ccaggttccat 175
>gb|CV248165.1|CV248165 WS0112.B21_K08 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0112_K08 3', mRNA sequence
Length = 714
Score = 172 bits (87), Expect = 2e-041
Identities = 210/251 (83%)
Strand = Plus / Plus
Query: 457 cccataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcc 516
||||| |||||||| |||| ||||||||||| || || |||||||| || | ||||||
Sbjct: 278 cccatgatgtggtgccgctgaagccaaagctgcccttgagcatataaaagcctatcatcc 337
Query: 517 ccaaaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatgg 576
||| |||| || || ||||| ||||||| || ||||| |||| || || | |||||||
Sbjct: 338 ccataattgttatctccttttgtgaggacatcaacttccccagtatcttgcctttcatgg 397
Query: 577 accttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatt 636
||||||||||| || |||||||||||||| ||||||||||| ||||| |||||||| |||
Sbjct: 398 accttaatcacacgatggacaattggaatttcacgaccatcaacattaaaaacaacaatt 457
Query: 637 tctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaat 696
||||||||||||||||||||||| ||||| ||||| |||| || |||||||| || ||
Sbjct: 458 tctcctgtgcgaataggatctttactcatgtgcaagaacaaaatgtcacccctcttgaag 517
Query: 697 ccaggctccat 707
||||| |||||
Sbjct: 518 ccaggttccat 528
>gb|CV280249.1|CV280249 WS0135.B21_I10 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0135_I10 3', mRNA sequence
Length = 873
Score = 172 bits (87), Expect = 2e-041
Identities = 210/251 (83%)
Strand = Plus / Plus
Query: 457 cccataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcc 516
||||| |||||||| |||| ||||||||||| || || |||||||| || | |||||||
Sbjct: 434 cccatgatgtggtgccgctgaagccaaagctgcccttgagcatataaaagcctgtcatcc 493
Query: 517 ccaaaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatgg 576
||| |||| || || ||||| ||||||| || ||||| |||| || || | |||||||
Sbjct: 494 ccataattgttatctccttttgtgaggacatcaacttccccagtatcttgcctttcatgg 553
Query: 577 accttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatt 636
||||||||||| || |||||||||||||| ||||||||||| ||||| |||||||| ||
Sbjct: 554 accttaatcacacgatggacaattggaatttcacgaccatcaacattaaaaacaacaatc 613
Query: 637 tctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaat 696
||||||||||||||||||||||| ||||| ||||| |||| || |||||||| || ||
Sbjct: 614 tctcctgtgcgaataggatctttactcatgtgcaagaacaaaatgtcacccctcttgaag 673
Query: 697 ccaggctccat 707
||||| |||||
Sbjct: 674 ccaggttccat 684
>gb|DT495186.1|DT495186 WS0112.BR_K08 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0112_K08
5', mRNA sequence
Length = 621
Score = 172 bits (87), Expect = 2e-041
Identities = 210/251 (83%)
Strand = Plus / Minus
Query: 457 cccataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcc 516
||||| |||||||| |||| ||||||||||| || || |||||||| || | ||||||
Sbjct: 454 cccatgatgtggtgccgctgaagccaaagctgcccttgagcatataaaagcctatcatcc 395
Query: 517 ccaaaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatgg 576
||| |||| || || ||||| ||||||| || ||||| |||| || || | |||||||
Sbjct: 394 ccataattgttatctccttttgtgaggacatcaacttccccagtatcttgcctttcatgg 335
Query: 577 accttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatt 636
||||||||||| || |||||||||||||| ||||||||||| ||||| |||||||| |||
Sbjct: 334 accttaatcacacgatggacaattggaatttcacgaccatcaacattaaaaacaacaatt 275
Query: 637 tctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaat 696
||||||||||||||||||||||| ||||| ||||| |||| || |||||||| || ||
Sbjct: 274 tctcctgtgcgaataggatctttactcatgtgcaagaacaaaatgtcacccctcttgaag 215
Query: 697 ccaggctccat 707
||||| |||||
Sbjct: 214 ccaggttccat 204
>gb|DT503117.1|DT503117 WS0135.BR_I10 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0135_I10 5', mRNA sequence
Length = 854
Score = 172 bits (87), Expect = 2e-041
Identities = 210/251 (83%)
Strand = Plus / Minus
Query: 457 cccataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcc 516
||||| |||||||| |||| ||||||||||| || || |||||||| || | |||||||
Sbjct: 479 cccatgatgtggtgccgctgaagccaaagctgcccttgagcatataaaagcctgtcatcc 420
Query: 517 ccaaaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatgg 576
||| |||| || || ||||| ||||||| || ||||| |||| || || | |||||||
Sbjct: 419 ccataattgttatctccttttgtgaggacatcaacttccccagtatcttgcctttcatgg 360
Query: 577 accttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatt 636
||||||||||| || |||||||||||||| ||||||||||| ||||| |||||||| ||
Sbjct: 359 accttaatcacacgatggacaattggaatttcacgaccatcaacattaaaaacaacaatc 300
Query: 637 tctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaat 696
||||||||||||||||||||||| ||||| ||||| |||| || |||||||| || ||
Sbjct: 299 tctcctgtgcgaataggatctttactcatgtgcaagaacaaaatgtcacccctcttgaag 240
Query: 697 ccaggctccat 707
||||| |||||
Sbjct: 239 ccaggttccat 229
>gb|DT522032.1|DT522032 WS02035.B21_N23 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02035_N23 3', mRNA sequence
Length = 890
Score = 167 bits (84), Expect = 1e-039
Identities = 186/220 (84%)
Strand = Plus / Plus
Query: 457 cccataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcc 516
||||| |||||||| |||| ||||||||||| || || |||||||| || | ||||||
Sbjct: 445 cccatgatgtggtgccgctgaagccaaagctgcccttgagcatataaaagcctatcatcc 504
Query: 517 ccaaaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatgg 576
||| |||| || || ||||| ||||||| || ||||| |||| || || | |||||||
Sbjct: 505 ccataattgttatctccttttgtgaggacatcaacttccccagtatcttgcctttcatgg 564
Query: 577 accttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatt 636
||||||||||| || |||||||||||||| ||||||||||| ||||| |||||||| |||
Sbjct: 565 accttaatcacacgatggacaattggaatttcacgaccatcaacattaaaaacaacaatt 624
Query: 637 tctcctgtgcgaataggatctttgctcatatgcaaaaaca 676
||||||||||||||||||||||| ||||| ||||| ||||
Sbjct: 625 tctcctgtgcgaataggatctttactcatgtgcaagaaca 664
>gb|CA927691.1|CA927691 MTU6TR.P11.H03 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 586
Score = 165 bits (83), Expect = 4e-039
Identities = 210/251 (83%), Gaps = 1/251 (0%)
Strand = Plus / Minus
Query: 457 cccataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcc 516
||||| |||||||| |||| ||||||||||| || || |||||||| || | |||||||
Sbjct: 426 cccatgatgtggtgccgctgaagccaaagctgcccttgagcatataaaagcctgtcatcc 367
Query: 517 ccaaaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatgg 576
||| |||| || || ||||| ||||||| || ||||| |||| || || | |||||||
Sbjct: 366 ccataattgttatctccttttgtgaggacatcaacttccccagtatcttgcctttcatgg 307
Query: 577 accttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatt 636
||||||||||| || |||||||||||||| |||||| |||| ||||| |||||||| |||
Sbjct: 306 accttaatcacacgatggacaattggaatttcacga-catcaacattaaaaacaacaatt 248
Query: 637 tctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaat 696
||||||| ||||||||||||||||||||| ||||| |||| || |||||||| || ||
Sbjct: 247 tctcctgagcgaataggatctttgctcatgtgcaagaacaaaatgtcacccctcttgaag 188
Query: 697 ccaggctccat 707
||||| |||||
Sbjct: 187 ccaggttccat 177
>gb|CA930004.1|CA930004 MTU2CA.P5.G10 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 578
Score = 165 bits (83), Expect = 4e-039
Identities = 209/251 (83%)
Strand = Plus / Plus
Query: 457 cccataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcc 516
||||| |||||||| |||| ||||||||||| || || |||||||| || | |||||||
Sbjct: 161 cccatgatgtggtgccgctgaagccaaagctgcccttgagcatataaaagcctgtcatcc 220
Query: 517 ccaaaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatgg 576
||| |||| || || ||||| ||||||| || ||||| |||| || | | |||||||
Sbjct: 221 ccataattgttatctccttttgtgaggacatcaacttccccagtatctagcctttcatgg 280
Query: 577 accttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatt 636
||||||||||| || |||||||||||||| ||||||||||| ||||| |||||||| |||
Sbjct: 281 accttaatcacacgatggacaattggaatttcacgaccatcaacattaaaaacaacaatt 340
Query: 637 tctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaat 696
||| ||| ||||||||||||||||||||| ||||| |||| || |||||||| || ||
Sbjct: 341 tcttctgagcgaataggatctttgctcatgtgcaagaacaaaatgtcacccctcttgaag 400
Query: 697 ccaggctccat 707
||||| |||||
Sbjct: 401 ccaggttccat 411
Score = 44.1 bits (22), Expect = 0.011
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 764 ccttccatatgattaatgcagaggtaacaatcat 797
|||||||||| |||| |||||| |||||||||||
Sbjct: 468 ccttccatattattagtgcagatgtaacaatcat 501
>gb|BU867813.1|BU867813 M104F09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 694
Score = 141 bits (71), Expect = 6e-032
Identities = 194/235 (82%)
Strand = Plus / Minus
Query: 473 gctggagccaaagctggccatgtgcatataatagtcggtcatccccaaaattattgtcac 532
|||| ||||| ||||| || || ||||| || || | |||||||||| ||||||| || |
Sbjct: 470 gctgaagccagagctgcccttgcgcatacaaaagcctgtcatccccataattattatctc 411
Query: 533 ctttggtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcactcggt 592
|||| ||||||| || ||||| |||| || || | ||||||||||||||| || || |
Sbjct: 410 cttttgtgaggacatcaacttccccagtatcttgcctttcatggaccttaattacacgat 351
Query: 593 ggacaattggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcgaatag 652
| ||||||||||| ||||||||||| ||||| |||||||| |||||||||| |||||||
Sbjct: 350 gaacaattggaatttcacgaccatcaacattaaaaacaacaatttctcctgcacgaatag 291
Query: 653 gatctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctccat 707
||||||| ||||| |||||||||| || |||||||| || || ||||| |||||
Sbjct: 290 gatctttactcatgtgcaaaaacaaaatgtcacccctcttgaagccaggttccat 236
>gb|CF936266.1|CF936266 PO3003H11 Populus tomentiglandulosa T. Lee cDNA library Populus
tomentiglandulosa cDNA, mRNA sequence
Length = 630
Score = 141 bits (71), Expect = 6e-032
Identities = 194/235 (82%)
Strand = Plus / Minus
Query: 473 gctggagccaaagctggccatgtgcatataatagtcggtcatccccaaaattattgtcac 532
|||| ||||| ||||| || || ||||| || || | ||||||||| |||| || || |
Sbjct: 289 gctgaagccagagctgcccttgagcatacaagagcctgtcatccccgtaattgttatctc 230
Query: 533 ctttggtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcactcggt 592
|||| ||||||| || ||||| |||| || || | ||||||||||||||| || || |
Sbjct: 229 cttttgtgaggacatcaacttccccagtatcttgcctttcatggaccttaattacacgat 170
Query: 593 ggacaattggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcgaatag 652
| ||||||||||| ||||||||||| ||||| |||||||| |||||||||| |||||||
Sbjct: 169 gaacaattggaatttcacgaccatcaacattaaaaacaacaatttctcctgcacgaatag 110
Query: 653 gatctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctccat 707
||||||| |||||||||||||||| ||||||||||| || || ||||| |||||
Sbjct: 109 gatctttactcatatgcaaaaacaaaatatcacccctcttgaagccaggttccat 55
>gb|CF936786.1|CF936786 PO3010C06 Populus tomentiglandulosa T. Lee cDNA library Populus
tomentiglandulosa cDNA, mRNA sequence
Length = 618
Score = 141 bits (71), Expect = 6e-032
Identities = 194/235 (82%)
Strand = Plus / Minus
Query: 473 gctggagccaaagctggccatgtgcatataatagtcggtcatccccaaaattattgtcac 532
|||| ||||| ||||| || || ||||| || || | ||||||||| |||| || || |
Sbjct: 289 gctgaagccagagctgcccttgagcatacaagagcctgtcatccccgtaattgttatctc 230
Query: 533 ctttggtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcactcggt 592
|||| ||||||| || ||||| |||| || || | ||||||||||||||| || || |
Sbjct: 229 cttttgtgaggacatcaacttccccagtatcttgcctttcatggaccttaattacacgat 170
Query: 593 ggacaattggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcgaatag 652
| ||||||||||| ||||||||||| ||||| |||||||| |||||||||| |||||||
Sbjct: 169 gaacaattggaatttcacgaccatcaacattaaaaacaacaatttctcctgcacgaatag 110
Query: 653 gatctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctccat 707
||||||| |||||||||||||||| ||||||||||| || || ||||| |||||
Sbjct: 109 gatctttactcatatgcaaaaacaaaatatcacccctcttgaagccaggttccat 55
>gb|CF936909.1|CF936909 PO3011H07 Populus tomentiglandulosa T. Lee cDNA library Populus
tomentiglandulosa cDNA, mRNA sequence
Length = 643
Score = 141 bits (71), Expect = 6e-032
Identities = 194/235 (82%)
Strand = Plus / Minus
Query: 473 gctggagccaaagctggccatgtgcatataatagtcggtcatccccaaaattattgtcac 532
|||| ||||| ||||| || || ||||| || || | ||||||||| |||| || || |
Sbjct: 290 gctgaagccagagctgcccttgagcatacaagagcctgtcatccccgtaattgttatctc 231
Query: 533 ctttggtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcactcggt 592
|||| ||||||| || ||||| |||| || || | ||||||||||||||| || || |
Sbjct: 230 cttttgtgaggacatcaacttccccagtatcttgcctttcatggaccttaattacacgat 171
Query: 593 ggacaattggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcgaatag 652
| ||||||||||| ||||||||||| ||||| |||||||| |||||||||| |||||||
Sbjct: 170 gaacaattggaatttcacgaccatcaacattaaaaacaacaatttctcctgcacgaatag 111
Query: 653 gatctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctccat 707
||||||| |||||||||||||||| ||||||||||| || || ||||| |||||
Sbjct: 110 gatctttactcatatgcaaaaacaaaatatcacccctcttgaagccaggttccat 56
>gb|DT498845.1|DT498845 WS0116.BR_I10 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0116_I10
5', mRNA sequence
Length = 553
Score = 141 bits (71), Expect = 6e-032
Identities = 194/235 (82%)
Strand = Plus / Minus
Query: 473 gctggagccaaagctggccatgtgcatataatagtcggtcatccccaaaattattgtcac 532
|||| ||||| ||||| || || ||||| || || | |||||||||| ||||||| || |
Sbjct: 439 gctgaagccagagctgcccttgagcatacaaaagcctgtcatccccataattattatctc 380
Query: 533 ctttggtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcactcggt 592
|||| ||||||| || ||||| |||| || || | ||||||||||||||| || || |
Sbjct: 379 cttttgtgaggacatcaacttccccagtatcttgcctttcatggaccttaattacacgat 320
Query: 593 ggacaattggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcgaatag 652
| ||||||||||| ||||||||||| ||||| |||||||| |||||||||| |||||||
Sbjct: 319 gaacaattggaatttcacgaccatcaacattaaaaacaacaatttctcctgcacgaatag 260
Query: 653 gatctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctccat 707
||||||| ||||| |||||||||| || |||||||| || || ||||| |||||
Sbjct: 259 gatctttactcatgtgcaaaaacaaaatgtcacccctcttgaagccaggttccat 205
>gb|BU868261.1|BU868261 M113C06 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 600
Score = 133 bits (67), Expect = 1e-029
Identities = 193/235 (82%)
Strand = Plus / Minus
Query: 473 gctggagccaaagctggccatgtgcatataatagtcggtcatccccaaaattattgtcac 532
|||| ||||| ||||| || || ||||| || || | |||||||||| |||| || || |
Sbjct: 431 gctgaagccagagctgcccttgcgcatacaaaagcctgtcatccccataattgttatctc 372
Query: 533 ctttggtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcactcggt 592
|||| ||||||| || ||||| |||| || || | ||||||||||||||| || || |
Sbjct: 371 cttttgtgaggacatcaacttccccagtatcttgcctttcatggaccttaattacacgat 312
Query: 593 ggacaattggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcgaatag 652
| ||||||||||| ||||||||||| ||||| |||||||| |||||||||| |||||||
Sbjct: 311 gaacaattggaatttcacgaccatcaacattaaaaacaacaatttctcctgcacgaatag 252
Query: 653 gatctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctccat 707
||||||| ||||| |||||||||| || |||||||| || || ||||| |||||
Sbjct: 251 gatctttactcatgtgcaaaaacaaaatgtcacccctcttgaagccaggttccat 197
>gb|CK092595.1|CK092595 G088P73.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G088P73 3', mRNA sequence
Length = 777
Score = 133 bits (67), Expect = 1e-029
Identities = 161/191 (84%), Gaps = 1/191 (0%)
Strand = Plus / Plus
Query: 457 cccataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcc 516
||||| |||||||| |||| ||||||||||| || || |||||||| |||| |||||||
Sbjct: 421 cccatgatgtggtgccgctgaagccaaagctgcccttgagcatataaaagtctgtcatcc 480
Query: 517 ccaaaattattgtcacctttggtgagg-atgtccacttctgcagtgtcctgacgttcatg 575
||| |||| || || ||||| |||||| | || ||||| |||| || || | ||||||
Sbjct: 481 ccataattgttatctccttttgtgagggacatcaacttccccagtatcttgcctttcatg 540
Query: 576 gaccttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactat 635
|||||||||||| || |||||||||||||| ||||||||||| ||||| |||||||| ||
Sbjct: 541 gaccttaatcacacgatggacaattggaatttcacgaccatcaacattaaaaacaacaat 600
Query: 636 ttctcctgtgc 646
|||||||||||
Sbjct: 601 ttctcctgtgc 611
>gb|CV237475.1|CV237475 WS01227.B21_J17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01227_J17 3', mRNA sequence
Length = 799
Score = 133 bits (67), Expect = 1e-029
Identities = 193/235 (82%)
Strand = Plus / Plus
Query: 473 gctggagccaaagctggccatgtgcatataatagtcggtcatccccaaaattattgtcac 532
|||| ||||| ||||| || || ||||| || || | |||||||||| |||| || || |
Sbjct: 437 gctgaagccagagctgcccttgcgcatacaaaagcctgtcatccccataattgttatctc 496
Query: 533 ctttggtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcactcggt 592
|||| ||||||| || ||||| |||| || || | ||||||||||||||| || || |
Sbjct: 497 cttttgtgaggacatcaacttccccagtatcttgcctttcatggaccttaattacacgat 556
Query: 593 ggacaattggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcgaatag 652
| ||||||||||| ||||||||||| ||||| |||||||| |||||||||| |||||||
Sbjct: 557 gaacaattggaatttcacgaccatcaacattaaaaacaacaatttctcctgcacgaatag 616
Query: 653 gatctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctccat 707
||||||| ||||| |||||||||| || |||||||| || || ||||| |||||
Sbjct: 617 gatctttactcatgtgcaaaaacaaaatgtcacccctcttgaagccaggttccat 671
>gb|CX169168.1|CX169168 G01_69-98_13.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 646
Score = 133 bits (67), Expect = 1e-029
Identities = 193/235 (82%)
Strand = Plus / Minus
Query: 473 gctggagccaaagctggccatgtgcatataatagtcggtcatccccaaaattattgtcac 532
|||| ||||| ||||| || || ||||| || || | |||||||||| |||| || || |
Sbjct: 486 gctgaagccagagctgcccttgagcatacaaaagcctgtcatccccataattgttatctc 427
Query: 533 ctttggtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcactcggt 592
|||| ||||||| || ||||| |||| || || | ||||||||||||||| || || |
Sbjct: 426 cttttgtgaggacatcaacttccccagtatcttgcctttcatggaccttaattacacgat 367
Query: 593 ggacaattggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcgaatag 652
| ||||||||||| ||||||||||| ||||| |||||||| |||||||||| |||||||
Sbjct: 366 gaacaattggaatttcacgaccatcaacattaaaaacaacaatttctcctgcacgaatag 307
Query: 653 gatctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctccat 707
||||||| ||||| |||||||||| || |||||||| || || ||||| |||||
Sbjct: 306 gatctttactcatgtgcaaaaacaaaatgtcacccctcttgaagccaggttccat 252
>gb|DT472727.1|DT472727 WS01227.BR.1_J17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01227_J17 5', mRNA sequence
Length = 839
Score = 133 bits (67), Expect = 1e-029
Identities = 193/235 (82%)
Strand = Plus / Minus
Query: 473 gctggagccaaagctggccatgtgcatataatagtcggtcatccccaaaattattgtcac 532
|||| ||||| ||||| || || ||||| || || | |||||||||| |||| || || |
Sbjct: 486 gctgaagccagagctgcccttgcgcatacaaaagcctgtcatccccataattgttatctc 427
Query: 533 ctttggtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcactcggt 592
|||| ||||||| || ||||| |||| || || | ||||||||||||||| || || |
Sbjct: 426 cttttgtgaggacatcaacttccccagtatcttgcctttcatggaccttaattacacgat 367
Query: 593 ggacaattggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcgaatag 652
| ||||||||||| ||||||||||| ||||| |||||||| |||||||||| |||||||
Sbjct: 366 gaacaattggaatttcacgaccatcaacattaaaaacaacaatttctcctgcacgaatag 307
Query: 653 gatctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctccat 707
||||||| ||||| |||||||||| || |||||||| || || ||||| |||||
Sbjct: 306 gatctttactcatgtgcaaaaacaaaatgtcacccctcttgaagccaggttccat 252
>gb|DT477434.1|DT477434 WS02519.BR_O22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02519_O22 5', mRNA sequence
Length = 678
Score = 133 bits (67), Expect = 1e-029
Identities = 193/235 (82%)
Strand = Plus / Minus
Query: 473 gctggagccaaagctggccatgtgcatataatagtcggtcatccccaaaattattgtcac 532
|||| ||||| ||||| || || ||||| || || | |||||||||| |||| || || |
Sbjct: 418 gctgaagccagagctgcccttgcgcatacaaaagcctgtcatccccataattgttatctc 359
Query: 533 ctttggtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcactcggt 592
|||| ||||||| || ||||| |||| || || | ||||||||||||||| || || |
Sbjct: 358 cttttgtgaggacatcaacttccccagtatcttgcctttcatggaccttaattacacgat 299
Query: 593 ggacaattggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcgaatag 652
| ||||||||||| ||||||||||| ||||| |||||||| |||||||||| |||||||
Sbjct: 298 gaacaattggaatttcacgaccatcaacattaaaaacaacaatttctcctgcacgaatag 239
Query: 653 gatctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctccat 707
||||||| ||||| |||||||||| || |||||||| || || ||||| |||||
Sbjct: 238 gatctttactcatgtgcaaaaacaaaatgtcacccctcttgaagccaggttccat 184
>gb|DT482477.1|DT482477 WS02519.B21_O22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02519_O22 3', mRNA sequence
Length = 795
Score = 133 bits (67), Expect = 1e-029
Identities = 193/235 (82%)
Strand = Plus / Plus
Query: 473 gctggagccaaagctggccatgtgcatataatagtcggtcatccccaaaattattgtcac 532
|||| ||||| ||||| || || ||||| || || | |||||||||| |||| || || |
Sbjct: 456 gctgaagccagagctgcccttgcgcatacaaaagcctgtcatccccataattgttatctc 515
Query: 533 ctttggtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcactcggt 592
|||| ||||||| || ||||| |||| || || | ||||||||||||||| || || |
Sbjct: 516 cttttgtgaggacatcaacttccccagtatcttgcctttcatggaccttaattacacgat 575
Query: 593 ggacaattggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcgaatag 652
| ||||||||||| ||||||||||| ||||| |||||||| |||||||||| |||||||
Sbjct: 576 gaacaattggaatttcacgaccatcaacattaaaaacaacaatttctcctgcacgaatag 635
Query: 653 gatctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctccat 707
||||||| ||||| |||||||||| || |||||||| || || ||||| |||||
Sbjct: 636 gatctttactcatgtgcaaaaacaaaatgtcacccctcttgaagccaggttccat 690
>gb|DT526178.1|DT526178 WS02047.C21_F08 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02047_F08 3', mRNA sequence
Length = 682
Score = 131 bits (66), Expect = 6e-029
Identities = 165/198 (83%)
Strand = Plus / Plus
Query: 510 gtcatccccaaaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacg 569
|||||||||| |||| || || ||||| ||||||| || ||||| |||| || || |
Sbjct: 400 gtcatccccataattgttatctccttttgtgaggacatcaacttccccagtatcttgcct 459
Query: 570 ttcatggaccttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaac 629
||||||||||||||| || || || ||||||||||| ||||||||||| ||||| |||||
Sbjct: 460 ttcatggaccttaattacacgatgaacaattggaatttcacgaccatcaacattaaaaac 519
Query: 630 aactatttctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatcacccct 689
||| |||||||||| |||||||||||||| ||||| |||||||||| || ||||||||
Sbjct: 520 aacaatttctcctgcacgaataggatctttactcatgtgcaaaaacaaaatgtcacccct 579
Query: 690 tttaaatccaggctccat 707
|| || ||||| |||||
Sbjct: 580 cttgaagccaggttccat 597
>gb|CV260260.1|CV260260 WS02013.B21_J12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02013_J12 3', mRNA sequence
Length = 692
Score = 129 bits (65), Expect = 2e-028
Identities = 179/217 (82%)
Strand = Plus / Plus
Query: 473 gctggagccaaagctggccatgtgcatataatagtcggtcatccccaaaattattgtcac 532
|||| ||||| ||||| || || ||||| || || | |||||||||| |||| || || |
Sbjct: 464 gctgaagccagagctgcccttgcgcatacaaaagcctgtcatccccataattgttatctc 523
Query: 533 ctttggtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcactcggt 592
|||| ||||||| || ||||| |||| || || | ||||||||||||||| || || |
Sbjct: 524 cttttgtgaggacatcaacttccccagtatcttgcctttcatggaccttaattacacgat 583
Query: 593 ggacaattggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcgaatag 652
| ||||||||||| ||||||||||| ||||| |||||||| |||||||||| |||||||
Sbjct: 584 gaacaattggaatttcacgaccatcaacattaaaaacaacaatttctcctgcacgaatag 643
Query: 653 gatctttgctcatatgcaaaaacaggatatcacccct 689
||||||| ||||| |||||||||| || ||||||||
Sbjct: 644 gatctttactcatgtgcaaaaacaaaatgtcacccct 680
>gb|CK099644.1|CK099644 A079P11.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A079P11 5', mRNA sequence
Length = 440
Score = 117 bits (59), Expect = 9e-025
Identities = 192/235 (81%), Gaps = 1/235 (0%)
Strand = Plus / Minus
Query: 473 gctggagccaaagctggccatgtgcatataatagtcggtcatccccaaaattattgtcac 532
|||| ||||| ||||| || || ||||| || || | ||||||||| |||| || || |
Sbjct: 424 gctgaagccagagctgcccttgagcatacaagagcctgtcatccccgtaattgttatctc 365
Query: 533 ctttggtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcactcggt 592
|||| ||||||| || ||||| |||| || || | ||||||||||||||| || || |
Sbjct: 364 cttttgtgaggacatcaacttccccagtatcttgcctttcatggaccttaattacacgat 305
Query: 593 ggacaattggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcgaatag 652
| ||||||||||| ||||||||||| ||||| |||||||| |||||||||| |||||||
Sbjct: 304 gaacaattggaatttcacgaccatcaacatt-aaaacaacaatttctcctgcacgaatag 246
Query: 653 gatctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctccat 707
||||||| ||||| |||||||||| || |||||||| || || ||||| |||||
Sbjct: 245 gatctttactcatgtgcaaaaacaaaatgtcacccctcttgaagccaggttccat 191
>gb|DT499856.1|DT499856 WS9991.BR_I17 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0119_F18
5', mRNA sequence
Length = 411
Score = 105 bits (53), Expect = 3e-021
Identities = 98/113 (86%)
Strand = Plus / Minus
Query: 595 acaattggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcgaatagga 654
||||||||||| ||||||||||| ||||| |||||||| |||||||||| |||||||||
Sbjct: 399 acaattggaatttcacgaccatcaacattaaaaacaacaatttctcctgcacgaatagga 340
Query: 655 tctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctccat 707
||||| ||||| |||||||||| || |||||||| || || ||||| |||||
Sbjct: 339 tctttactcatgtgcaaaaacaaaatgtcacccctcttgaagccaggttccat 287
>gb|AI165230.1|AI165230 A079P11U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 312
Score = 85.7 bits (43), Expect = 3e-015
Identities = 97/114 (85%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 594 gacaattggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcgaatagg 653
|||||||||||| || || ||||| ||||| |||||||| |||||||||| ||||||||
Sbjct: 251 gacaattggaatttcncg-ccatcaacattaaaaacaacaatttctcctgcacgaatagg 193
Query: 654 atctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctccat 707
|||||| ||||| |||||||||| || |||||||| || || ||||| |||||
Sbjct: 192 atctttactcatgtgcaaaaacaaaatgtcacccctcttgaagccaggttccat 139
>gb|CV267552.1|CV267552 WS02032.B21_A22 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02032_A22 3', mRNA sequence
Length = 932
Score = 52.0 bits (26), Expect = 4e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 646 cgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctcc 705
|||||||||||||| ||||| |||||||||| || |||||||| || || ||||| |||
Sbjct: 927 cgaataggatctttactcatgtgcaaaaacaaaatgtcacccctcttgaagccaggttcc 868
Query: 706 at 707
||
Sbjct: 867 at 866
>gb|CV226677.1|CV226677 WS0164.B21_P10 PT-DX-A-7 Populus trichocarpa cDNA clone WS0164_P10
3', mRNA sequence
Length = 408
Score = 48.1 bits (24), Expect = 7e-004
Identities = 72/88 (81%)
Strand = Plus / Minus
Query: 457 cccataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcc 516
||||| |||||||| |||| ||||||||||| || || |||||||| || | ||||||
Sbjct: 119 cccatgatgtggtgccgctgaagccaaagctgcccttgagcatataaaagcctatcatcc 60
Query: 517 ccaaaattattgtcacctttggtgagga 544
||| |||| || || ||||| |||||||
Sbjct: 59 ccataattgttatctccttttgtgagga 32
>gb|CV257768.1|CV257768 WS0247.B21_J18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0247_J18 3', mRNA sequence
Length = 786
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 379 agcaggtacttaataaatggtttctcagtcatgataattgtaaccca 425
|||| |||||| |||| |||||||||||||| || |||||||||||
Sbjct: 280 agcatgtacttgataataggtttctcagtcattatgattgtaaccca 326
>gb|DT520738.1|DT520738 WS02448.B21_G12 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02448_G12 3', mRNA sequence
Length = 751
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 379 agcaggtacttaataaatggtttctcagtcatgataattgtaaccca 425
|||| |||||| |||| |||||||||||||| || |||||||||||
Sbjct: 276 agcatgtacttgataataggtttctcagtcattatgattgtaaccca 322
>gb|CV254802.1|CV254802 WS02411.B21_D15 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02411_D15 3', mRNA sequence
Length = 894
Score = 42.1 bits (21), Expect = 0.042
Identities = 63/77 (81%)
Strand = Plus / Plus
Query: 349 gttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggtttctcagtc 408
||||| ||||||| || || ||||| || |||| |||||| |||| ||||||||||||
Sbjct: 314 gttataaccagcagacctagagcgcctataagcatgtacttgataataggtttctcagtc 373
Query: 409 atgataattgtaaccca 425
|| | |||||||||||
Sbjct: 374 atcacgattgtaaccca 390
>gb|DT515959.1|DT515959 WS02430.B21_A02 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02430_A02 3', mRNA sequence
Length = 389
Score = 42.1 bits (21), Expect = 0.042
Identities = 63/77 (81%)
Strand = Plus / Plus
Query: 349 gttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggtttctcagtc 408
||||| |||||||| || | ||||| || |||| |||||| |||| ||||||||||||
Sbjct: 274 gttataaccagcaaacctaaagcgcctataagcatgtacttgataataggtttctcagtc 333
Query: 409 atgataattgtaaccca 425
|| | |||||||||||
Sbjct: 334 atcacgattgtaaccca 350
>gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and shoot Populus euphratica cDNA
clone 46, mRNA sequence
Length = 574
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1014 gtacctgcccgggcggccgc 1033
||||||||||||||||||||
Sbjct: 479 gtacctgcccgggcggccgc 498
>gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 606
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1014 gtacctgcccgggcggccgc 1033
||||||||||||||||||||
Sbjct: 289 gtacctgcccgggcggccgc 270
>gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 786
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1014 gtacctgcccgggcggccgc 1033
||||||||||||||||||||
Sbjct: 656 gtacctgcccgggcggccgc 637
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1014 gtacctgcccgggcggccgc 1033
||||||||||||||||||||
Sbjct: 625 gtacctgcccgggcggccgc 644
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 95,753
Number of Sequences: 369679
Number of extensions: 95753
Number of successful extensions: 25238
Number of sequences better than 0.5: 36
Number of HSP's better than 0.5 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25166
Number of HSP's gapped (non-prelim): 67
length of query: 1033
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1014
effective length of database: 196,384,763
effective search space: 199134149682
effective search space used: 199134149682
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)