BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2550132.2.1
(603 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA926209.1|CA926209 MTU6CR.P11.C07 Aspen root cDNA Libra... 52 2e-005
gb|CV265001.1|CV265001 WS02026.B21_B01 PTxN-IB-N-A-11 Popul... 52 2e-005
gb|CV276058.1|CV276058 WS0178.B21.1_H22 PTxD-NR-A-8 Populus... 52 2e-005
gb|CX167639.1|CX167639 F08_69-6_12.ab1 leaf inoculated with... 52 2e-005
gb|DT523819.1|DT523819 WS02040.B21_L16 PTxN-IB-N-A-11 Popul... 52 2e-005
gb|CB240336.1|CB240336 PopSC00315 Poplar SC cDNA library Po... 44 0.006
>gb|CA926209.1|CA926209 MTU6CR.P11.C07 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 550
Score = 52.0 bits (26), Expect = 2e-005
Identities = 77/94 (81%)
Strand = Plus / Minus
Query: 367 cttgaacttcatcaggcacatgacgggtccgaagatctcctccttcgctatgatcatgtc 426
|||||||||||| || |||| |||||||| || ||||| || | ||||| ||||||||
Sbjct: 165 cttgaacttcatgagtgacattacgggtccaaaaatctcatctgttgctatcatcatgtc 106
Query: 427 ctccttgacgttggtgaaaactgtgggctcaatg 460
|||||| || | ||||||| ||| |||||||||
Sbjct: 105 ctccttaacatctgtgaaaattgtaggctcaatg 72
>gb|CV265001.1|CV265001 WS02026.B21_B01 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02026_B01 3', mRNA sequence
Length = 907
Score = 52.0 bits (26), Expect = 2e-005
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 367 cttgaacttcatcaggcacatgacgggtccgaagatctcctccttcgctatgatcatgtc 426
|||||||||||| || |||| || ||||| || ||||| || | ||||| ||||||||
Sbjct: 530 cttgaacttcatgagtgacattaccggtccaaaaatctcatctgttgctatcatcatgtc 589
Query: 427 ctccttgacgttggtgaaaactgtgggctcaatg 460
|||||| || | ||||||||||| |||||||||
Sbjct: 590 ctccttaacatctgtgaaaactgtaggctcaatg 623
>gb|CV276058.1|CV276058 WS0178.B21.1_H22 PTxD-NR-A-8 Populus trichocarpa x Populus
deltoides cDNA clone WS0178_H22 3', mRNA sequence
Length = 831
Score = 52.0 bits (26), Expect = 2e-005
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 367 cttgaacttcatcaggcacatgacgggtccgaagatctcctccttcgctatgatcatgtc 426
|||||||||||| || |||| || ||||| || ||||| || | ||||| ||||||||
Sbjct: 555 cttgaacttcatgagtgacattaccggtccaaaaatctcatctgttgctatcatcatgtc 614
Query: 427 ctccttgacgttggtgaaaactgtgggctcaatg 460
|||||| || | ||||||||||| |||||||||
Sbjct: 615 ctccttaacatctgtgaaaactgtaggctcaatg 648
>gb|CX167639.1|CX167639 F08_69-6_12.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 625
Score = 52.0 bits (26), Expect = 2e-005
Identities = 77/94 (81%)
Strand = Plus / Minus
Query: 367 cttgaacttcatcaggcacatgacgggtccgaagatctcctccttcgctatgatcatgtc 426
|||||||||||| || |||| || ||||| || ||||| || | ||||| ||||||||
Sbjct: 604 cttgaacttcatgagtgacattaccggtccaaaaatctcatctgttgctatcatcatgtc 545
Query: 427 ctccttgacgttggtgaaaactgtgggctcaatg 460
|||||| || | ||||||||||| |||||||||
Sbjct: 544 ctccttaacatctgtgaaaactgtaggctcaatg 511
>gb|DT523819.1|DT523819 WS02040.B21_L16 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02040_L16 3', mRNA sequence
Length = 843
Score = 52.0 bits (26), Expect = 2e-005
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 367 cttgaacttcatcaggcacatgacgggtccgaagatctcctccttcgctatgatcatgtc 426
|||||||||||| || |||| || ||||| || ||||| || | ||||| ||||||||
Sbjct: 448 cttgaacttcatgagtgacattaccggtccaaaaatctcatctgttgctatcatcatgtc 507
Query: 427 ctccttgacgttggtgaaaactgtgggctcaatg 460
|||||| || | ||||||||||| |||||||||
Sbjct: 508 ctccttaacatctgtgaaaactgtaggctcaatg 541
>gb|CB240336.1|CB240336 PopSC00315 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PopSC00315, mRNA sequence
Length = 444
Score = 44.1 bits (22), Expect = 0.006
Identities = 76/94 (80%)
Strand = Plus / Minus
Query: 367 cttgaacttcatcaggcacatgacgggtccgaagatctcctccttcgctatgatcatgtc 426
|||||||||||| || |||| || ||||| || ||||| || | ||||| ||||| ||
Sbjct: 218 cttgaacttcatgagtgacattaccggtccaaaaatctcatctgttgctatcatcatctc 159
Query: 427 ctccttgacgttggtgaaaactgtgggctcaatg 460
|||||| || | ||||||||||| |||||||||
Sbjct: 158 ctccttaacatctgtgaaaactgtaggctcaatg 125
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 54,102
Number of Sequences: 369679
Number of extensions: 54102
Number of successful extensions: 15441
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15424
Number of HSP's gapped (non-prelim): 17
length of query: 603
length of database: 203,408,664
effective HSP length: 19
effective length of query: 584
effective length of database: 196,384,763
effective search space: 114688701592
effective search space used: 114688701592
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)