BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521918.2.1
(417 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and... 50 7e-005
gb|AF139835.1|AF139835 Populus tremula x Populus tremuloide... 46 0.001
gb|AF133675.1|AF133675 Populus tremula x Populus tremuloide... 44 0.004
gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Libr... 42 0.016
gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Librar... 40 0.065
gb|AJ770272.1|AJ770272 AJ770272 Populus euphratica leaf 3-6... 40 0.065
gb|CA924833.1|CA924833 MTU7TL.P10.B12 Aspen leaf cDNA Libra... 38 0.26
gb|CA925020.1|CA925020 MTU7TL.P12.F05 Aspen leaf cDNA Libra... 38 0.26
>gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and shoot Populus euphratica cDNA
clone 46, mRNA sequence
Length = 574
Score = 50.1 bits (25), Expect = 7e-005
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 393 gtacctgcccgggcggccgctcgaa 417
|||||||||||||||||||||||||
Sbjct: 479 gtacctgcccgggcggccgctcgaa 503
>gb|AF139835.1|AF139835 Populus tremula x Populus tremuloides F-box containing protein TIR1
(TIR1) mRNA, complete cds
Length = 2646
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 394 tacctgcccgggcggccgctcga 416
|||||||||||||||||||||||
Sbjct: 65 tacctgcccgggcggccgctcga 43
>gb|AF133675.1|AF133675 Populus tremula x Populus tremuloides retinoblastoma-related
protein 1 (RB1) mRNA, complete cds
Length = 3572
Score = 44.1 bits (22), Expect = 0.004
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 395 acctgcccgggcggccgctcga 416
||||||||||||||||||||||
Sbjct: 38 acctgcccgggcggccgctcga 17
>gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 786
Score = 42.1 bits (21), Expect = 0.016
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 392 agtacctgcccgggcggccgc 412
|||||||||||||||||||||
Sbjct: 657 agtacctgcccgggcggccgc 637
Score = 40.1 bits (20), Expect = 0.065
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 393 gtacctgcccgggcggccgc 412
||||||||||||||||||||
Sbjct: 625 gtacctgcccgggcggccgc 644
>gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 606
Score = 40.1 bits (20), Expect = 0.065
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 393 gtacctgcccgggcggccgc 412
||||||||||||||||||||
Sbjct: 289 gtacctgcccgggcggccgc 270
>gb|AJ770272.1|AJ770272 AJ770272 Populus euphratica leaf 3-6 months, adult Populus
euphratica cDNA clone P0001100009G03F1, mRNA sequence
Length = 288
Score = 40.1 bits (20), Expect = 0.065
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 389 atcagtacctgcccgggcgg 408
||||||||||||||||||||
Sbjct: 260 atcagtacctgcccgggcgg 279
>gb|CA924833.1|CA924833 MTU7TL.P10.B12 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 569
Score = 38.2 bits (19), Expect = 0.26
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 394 tacctgcccgggcggccgc 412
|||||||||||||||||||
Sbjct: 529 tacctgcccgggcggccgc 547
>gb|CA925020.1|CA925020 MTU7TL.P12.F05 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 568
Score = 38.2 bits (19), Expect = 0.26
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 394 tacctgcccgggcggccgc 412
|||||||||||||||||||
Sbjct: 529 tacctgcccgggcggccgc 547
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 47,280
Number of Sequences: 369679
Number of extensions: 47280
Number of successful extensions: 11696
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11684
Number of HSP's gapped (non-prelim): 12
length of query: 417
length of database: 203,408,664
effective HSP length: 18
effective length of query: 399
effective length of database: 196,754,442
effective search space: 78505022358
effective search space used: 78505022358
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)