BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521686.2.1
(2104 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV270373.1|CV270373 WS0151.B21_N05 PTxN-IB-A-6 Populus t... 46 0.005
gb|CK096635.1|CK096635 UB21CPE10.3pR Populus active cambium... 40 0.34
gb|CK096647.1|CK096647 UB21CPH07.3pR Populus active cambium... 40 0.34
gb|CK106473.1|CK106473 UB21CPH07.5pR Populus active cambium... 40 0.34
gb|CV230439.1|CV230439 WS01916.B21_I22 PT-DX-N-A-10 Populus... 40 0.34
gb|CV247178.1|CV247178 WS01117.B21_E14 PT-P-FL-A-2 Populus ... 40 0.34
>gb|CV270373.1|CV270373 WS0151.B21_N05 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0151_N05 3', mRNA sequence
Length = 769
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 719 gttatggcccacatattcaccatcgccgtggtgccagccggga 761
|||||||||||||| || |||||||| || |||||||| ||||
Sbjct: 485 gttatggcccacatgttgaccatcgctgttgtgccagctggga 527
>gb|CK096635.1|CK096635 UB21CPE10.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB21CPE10 3', mRNA sequence
Length = 896
Score = 40.1 bits (20), Expect = 0.34
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 719 gttatggcccacatattcaccatcgccgtggt 750
||||||||||||||||| ||||| || |||||
Sbjct: 635 gttatggcccacatattaaccatagctgtggt 666
>gb|CK096647.1|CK096647 UB21CPH07.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB21CPH07 3', mRNA sequence
Length = 838
Score = 40.1 bits (20), Expect = 0.34
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 719 gttatggcccacatattcaccatcgccgtggt 750
||||||||||||||||| ||||| || |||||
Sbjct: 615 gttatggcccacatattaaccatagctgtggt 646
>gb|CK106473.1|CK106473 UB21CPH07.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB21CPH07 5', mRNA sequence
Length = 470
Score = 40.1 bits (20), Expect = 0.34
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 719 gttatggcccacatattcaccatcgccgtggt 750
||||||||||||||||| ||||| || |||||
Sbjct: 422 gttatggcccacatattaaccatagctgtggt 391
>gb|CV230439.1|CV230439 WS01916.B21_I22 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01916_I22 3', mRNA sequence
Length = 721
Score = 40.1 bits (20), Expect = 0.34
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 719 gttatggcccacatattcaccatcgccgtggt 750
||||||||||||||||| ||||| || |||||
Sbjct: 317 gttatggcccacatattaaccatagctgtggt 286
>gb|CV247178.1|CV247178 WS01117.B21_E14 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01117_E14 3', mRNA sequence
Length = 892
Score = 40.1 bits (20), Expect = 0.34
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 719 gttatggcccacatattcaccatcgccgtggt 750
||||||||||||||||| ||||| || |||||
Sbjct: 561 gttatggcccacatattaaccatagctgtggt 592
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 125,572
Number of Sequences: 369679
Number of extensions: 125572
Number of successful extensions: 34117
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34108
Number of HSP's gapped (non-prelim): 9
length of query: 2104
length of database: 203,408,664
effective HSP length: 20
effective length of query: 2084
effective length of database: 196,015,084
effective search space: 408495435056
effective search space used: 408495435056
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)