BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521589.2.1
(1689 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI163826.1|AI163826 A049P64U Hybrid aspen plasmid librar... 107 1e-021
gb|CF229348.1|CF229348 PtaXM0024D12D1208 Poplar cDNA librar... 107 1e-021
gb|CF233742.1|CF233742 PtaJXO0027B3B0303 Poplar cDNA librar... 107 1e-021
gb|CF236093.1|CF236093 PtaJXT0030E7E0709 Poplar cDNA librar... 107 1e-021
gb|AJ774243.1|AJ774243 AJ774243 Populus euphratica shoot 3-... 107 1e-021
dbj|D82815.1|POPPCYP73D Populus kitakamiensis cyp73a mRNA f... 107 1e-021
gb|U47293.1|PTU47293 Populus tremuloides trans-cinnamate 4-... 107 1e-021
gb|BU894988.1|BU894988 X017G06 Populus wood cDNA library Po... 100 3e-019
gb|BI129357.1|BI129357 G089P64Y Populus cambium cDNA librar... 94 2e-017
gb|BI130348.1|BI130348 G104P26Y Populus cambium cDNA librar... 94 2e-017
gb|CA823109.1|CA823109 R21A03 two-month-old roots from clon... 94 2e-017
gb|CK319298.1|CK319298 X9P09b10 Populus stem seasonal libra... 94 2e-017
gb|CV229053.1|CV229053 WS01912.B21_B10 PT-DX-N-A-10 Populus... 94 2e-017
gb|DT476958.1|DT476958 WS01231.B21_H07 PT-GT-FL-A-3 Populus... 94 2e-017
gb|DT486644.1|DT486644 WS02531.B21_I21 PT-MB-N-A-15 Populus... 94 2e-017
gb|DT515451.1|DT515451 WS02427.B21_J14 PTxD-ICC-N-A-14 Popu... 94 2e-017
gb|AF302495.1|AF302495 Populus trichocarpa X Populus deltoi... 94 2e-017
gb|AI163968.1|AI163968 A052P60U Hybrid aspen plasmid librar... 78 1e-012
gb|BI129739.1|BI129739 G095P25Y Populus cambium cDNA librar... 78 1e-012
gb|BI129799.1|BI129799 G095P72Y Populus cambium cDNA librar... 78 1e-012
gb|BU896032.1|BU896032 X034E05 Populus wood cDNA library Po... 78 1e-012
gb|CK099128.1|CK099128 A052P60.5pR Hybrid aspen plasmid lib... 78 1e-012
gb|CV130486.1|CV130486 X9P03a05 Populus stem seasonal libra... 78 1e-012
gb|CV240107.1|CV240107 WS0234.B21_G24 PT-MB-A-13 Populus tr... 76 5e-012
gb|DT486038.1|DT486038 WS02529.B21_N19 PT-MB-N-A-15 Populus... 76 5e-012
gb|DT488948.1|DT488948 WS02537.B21_O05 PT-MB-N-A-15 Populus... 76 5e-012
gb|DT485976.1|DT485976 WS02529.B21_K24 PT-MB-N-A-15 Populus... 74 2e-011
gb|CB833355.1|CB833355 R19B01 two-month-old roots from clon... 68 1e-009
dbj|D82812.1|POPCYP73AA Populus kitakamiensis cyp73a gene f... 66 5e-009
dbj|D82813.1|POPCYP73BB Populus kitakamiensis cyp73b gene f... 66 5e-009
dbj|D82814.1|POPCYP73CC Populus kitakamiensis cyp73c gene f... 60 3e-007
gb|BI128127.1|BI128127 G071P22Y Populus cambium cDNA librar... 54 2e-005
gb|CV274997.1|CV274997 WS0175.B21_A16 PTxD-NR-A-8 Populus t... 52 7e-005
gb|BU883009.1|BU883009 UM85TB12 Populus flower cDNA library... 50 3e-004
gb|CN518711.1|CN518711 GQ0104.B3_E06 GQ010 Populus trichoca... 50 3e-004
gb|CV241662.1|CV241662 WS02512.B21_O01 PT-MB-N-A-15 Populus... 50 3e-004
gb|DT474293.1|DT474293 WS01231.BR_H07 PT-GT-FL-A-3 Populus ... 50 3e-004
gb|DT480764.1|DT480764 WS02529.BR_N19 PT-MB-N-A-15 Populus ... 50 3e-004
gb|DT497720.1|DT497720 WS0113.BR_E16 PT-P-FL-A-2 Populus tr... 50 3e-004
gb|DT510779.1|DT510779 WS02427.BR_J14 PTxD-ICC-N-A-14 Popul... 50 3e-004
gb|DV464261.1|DV464261 MTUNUL1.P25.C07 NUL Populus fremonti... 50 3e-004
gb|BU869348.1|BU869348 M129A09 Populus flower cDNA library ... 46 0.004
gb|BU882344.1|BU882344 UM75TG07 Populus flower cDNA library... 46 0.004
gb|CA821732.1|CA821732 RSH06G02 two-month-old roots from cl... 46 0.004
gb|CV250349.1|CV250349 WS0113.B21_E16 PT-P-FL-A-2 Populus t... 46 0.004
gb|CV273950.1|CV273950 WS01712.B21_L12 PTxD-NR-A-8 Populus ... 46 0.004
gb|DT479967.1|DT479967 WS02527.BR_I09 PT-MB-N-A-15 Populus ... 46 0.004
gb|AI162374.1|AI162374 A016P55U Hybrid aspen plasmid librar... 44 0.017
gb|BU897427.1|BU897427 X057F02 Populus wood cDNA library Po... 44 0.017
gb|CF235170.1|CF235170 PtaJXT0019F5F0511 Poplar cDNA librar... 44 0.017
gb|CK088430.1|CK088430 A052P60.3pR Hybrid aspen plasmid lib... 44 0.017
gb|CF216325.1|CF216325 PT1156 Hybrid aspen xylem up-regulat... 42 0.068
gb|CF232259.1|CF232259 PtaJXO0008C1G0214 Poplar cDNA librar... 42 0.068
gb|AJ777170.1|AJ777170 AJ777170 Populus euphratica root 3-6... 42 0.068
gb|BP922577.1|BP922577 BP922577 full-length enriched poplar... 42 0.068
gb|BU896193.1|BU896193 X037A01 Populus wood cDNA library Po... 40 0.27
gb|CF119044.1|CF119044 MTU10CS.P12.G06 Aspen stem cDNA Libr... 40 0.27
gb|CK088835.1|CK088835 A075P09.3pR Hybrid aspen plasmid lib... 40 0.27
gb|CK088855.1|CK088855 A076P09.3pR Hybrid aspen plasmid lib... 40 0.27
gb|CN550228.1|CN550228 GQ0243.B3_P11 GQ024 Populus trichoca... 40 0.27
gb|CV232998.1|CV232998 WS0199.B21_F05 PT-DX-N-A-10 Populus ... 40 0.27
gb|CV243043.1|CV243043 WS02516.B21.1_L21 PT-MB-N-A-15 Popul... 40 0.27
gb|CV260856.1|CV260856 WS02015.B21_D02 PTxN-IB-N-A-11 Popul... 40 0.27
gb|CV271260.1|CV271260 WS0154.B21_D13 PTxN-IB-A-6 Populus t... 40 0.27
gb|BP933286.1|BP933286 BP933286 full-length enriched poplar... 40 0.27
>gb|AI163826.1|AI163826 A049P64U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 346
Score = 107 bits (54), Expect = 1e-021
Identities = 99/114 (86%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 243 tggttcacaagctcagcaatcccccactcgatcgaccatagtgttgtctcaattgcagcg 184
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttc 836
|||||||||||||| || ||||| ||||||||||| | ||||||||| ||||||
Sbjct: 183 acgttgatgttctcaacaatgtaaaggacgttgtcctcgttgatctctcccttc 130
>gb|CF229348.1|CF229348 PtaXM0024D12D1208 Poplar cDNA library from mature xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 747
Score = 107 bits (54), Expect = 1e-021
Identities = 99/114 (86%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 539 tggttcacaagctcagcaatcccccactcgatcgaccatagtgttgtctcaattgcagcg 480
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttc 836
|||||||||||||| || ||||| ||||||||||| | ||||||||| ||||||
Sbjct: 479 acgttgatgttctcaacaatgtacaggacgttgtcctcgttgatctctcccttc 426
>gb|CF233742.1|CF233742 PtaJXO0027B3B0303 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 654
Score = 107 bits (54), Expect = 1e-021
Identities = 99/114 (86%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 453 tggttcacaagctcagcaatcccccactcgatcgaccatagtgttgtctcaattgcagcg 394
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttc 836
|||||||||||||| || ||||| ||||||||||| | ||||||||| ||||||
Sbjct: 393 acgttgatgttctcaacaatgtaaaggacgttgtcctcgttgatctctcccttc 340
>gb|CF236093.1|CF236093 PtaJXT0030E7E0709 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 596
Score = 107 bits (54), Expect = 1e-021
Identities = 99/114 (86%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 147 tggttcacaagctcagcaatcccccactcgatcgaccatagtgttgtctcaattgcagcg 88
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttc 836
|||||||||||||| || ||||| ||||||||||| | ||||||||| ||||||
Sbjct: 87 acgttgatgttctcaacaatgtaaaggacgttgtcctcgttgatctctcccttc 34
>gb|AJ774243.1|AJ774243 AJ774243 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300014F06F1, mRNA sequence
Length = 426
Score = 107 bits (54), Expect = 1e-021
Identities = 99/114 (86%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 161 tggttcacaagctcagcaatcccccactcgatcgaccatagtgttgtctcaattgcggcg 102
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttc 836
|||||||||||||| || ||||| ||||||||||| | ||||||||| ||||||
Sbjct: 101 acgttgatgttctcaacaatgtaaaggacgttgtcctcgttgatctctcccttc 48
>dbj|D82815.1|POPPCYP73D Populus kitakamiensis cyp73a mRNA for cinnamic acid 4-hydroxylase,
complete cds
Length = 1737
Score = 107 bits (54), Expect = 1e-021
Identities = 99/114 (86%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 1033 tggttcacaagctcagcaatcccccactcgatcgaccatagtgttgtctcaattgcagcg 974
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttc 836
|||||||||||||| || ||||| ||||||||||| | ||||||||| ||||||
Sbjct: 973 acgttgatgttctcaacaatgtaaaggacgttgtcctcgttgatctctcccttc 920
Score = 42.1 bits (21), Expect = 0.068
Identities = 72/89 (80%)
Strand = Plus / Minus
Query: 1260 accttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccg 1319
|||||||| || ||||| ||||| |||||||| | || |||||| | ||| || || ||
Sbjct: 484 accttgtttgtaaagaaagggacagtcatgattctcctcatcttcctccaatgctcacca 425
Query: 1320 tacaccgtgaacaccatgtcctgcccctt 1348
|| || |||||||||||||| || |||||
Sbjct: 424 tagacagtgaacaccatgtcttgtccctt 396
>gb|U47293.1|PTU47293 Populus tremuloides trans-cinnamate 4-hydroxylase (PtC4H) mRNA,
complete cds
Length = 1803
Score = 107 bits (54), Expect = 1e-021
Identities = 99/114 (86%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 1048 tggttcacaagctcagcaattccccactcgatcgaccatagtgttgtctcaattgcagcg 989
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttc 836
|||||||||||||| || ||||| ||||||||||| | ||||||||| ||||||
Sbjct: 988 acgttgatgttctcaacaatgtaaaggacgttgtcctcgttgatctctcccttc 935
Score = 42.1 bits (21), Expect = 0.068
Identities = 72/89 (80%)
Strand = Plus / Minus
Query: 1260 accttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccg 1319
|||||||| || ||||| ||||| |||||||| | || |||||| | ||| || || ||
Sbjct: 499 accttgtttgtaaagaaagggactgtcatgattctcctcatcttcctccaatgctcacca 440
Query: 1320 tacaccgtgaacaccatgtcctgcccctt 1348
|| || |||||||||||||| || |||||
Sbjct: 439 tagacagtgaacaccatgtcttgtccctt 411
>gb|BU894988.1|BU894988 X017G06 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 697
Score = 99.6 bits (50), Expect = 3e-019
Identities = 98/114 (85%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 598 tggttcacaagctcagcaatcccccactcgatcgaccatagtgttgtctcaattgcagcg 539
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttc 836
|||| ||||||||| || ||||| ||||||||||| | ||||||||| ||||||
Sbjct: 538 acgtcgatgttctcaacaatgtaaaggacgttgtcctcgttgatctctcccttc 485
>gb|BI129357.1|BI129357 G089P64Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 277
Score = 93.7 bits (47), Expect = 2e-017
Identities = 99/115 (86%), Gaps = 1/115 (0%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtc-tcgatcgctgc 781
|||||||| ||||| || || ||||||||||||||||| ||||| ||| || || || ||
Sbjct: 239 tggttcacaagctcagcaatcccccactcgatcgaccatagtgttgtcctcaattgcagc 180
Query: 782 gacgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttc 836
||||||||||||||| || ||||| ||||||||||| | ||||||||| ||||||
Sbjct: 179 gacgttgatgttctcaacaatgtaaaggacgttgtcctcgttgatctctcccttc 125
>gb|BI130348.1|BI130348 G104P26Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 523
Score = 93.7 bits (47), Expect = 2e-017
Identities = 83/95 (87%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 99 tggttcacaagctcagcaatcccccactcgatcgaccatagtgttgtctcaattgcagcg 40
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtc 817
|||||||||||||| || ||||| |||||||||||
Sbjct: 39 acgttgatgttctcaacaatgtaaaggacgttgtc 5
>gb|CA823109.1|CA823109 R21A03 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 644
Score = 93.7 bits (47), Expect = 2e-017
Identities = 92/107 (85%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 413 tggttcacaagctcagcaattccccactcgatcgaccatagtgttgtctcaattgcagcg 354
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctc 829
|||||||||||||| || ||||| || |||||||| | |||||||||
Sbjct: 353 acgttgatgttctcaacaatgtaaagaacgttgtcctcgttgatctc 307
>gb|CK319298.1|CK319298 X9P09b10 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 725
Score = 93.7 bits (47), Expect = 2e-017
Identities = 92/107 (85%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 112 tggttcacaagctcagcaattccccactcgatcgaccatagtgttgtctcaattgcagcg 53
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctc 829
|||||||||||||| || ||||| || |||||||| | |||||||||
Sbjct: 52 acgttgatgttctcaacaatgtaaagaacgttgtcctcgttgatctc 6
>gb|CV229053.1|CV229053 WS01912.B21_B10 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01912_B10 3', mRNA sequence
Length = 494
Score = 93.7 bits (47), Expect = 2e-017
Identities = 92/107 (85%)
Strand = Plus / Plus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 172 tggttcacaagctcagcaattccccactcgatcgaccatagtgttgtctcaattgcagcg 231
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctc 829
|||||||||||||| || ||||| || |||||||| | |||||||||
Sbjct: 232 acgttgatgttctcaacaatgtaaagaacgttgtcctcgttgatctc 278
>gb|DT476958.1|DT476958 WS01231.B21_H07 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01231_H07 3', mRNA sequence
Length = 932
Score = 93.7 bits (47), Expect = 2e-017
Identities = 92/107 (85%)
Strand = Plus / Plus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 782 tggttcacaagctcagcaattccccactcgatcgaccatagtgttgtctcaattgcagcg 841
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctc 829
|||||||||||||| || ||||| || |||||||| | |||||||||
Sbjct: 842 acgttgatgttctcaacaatgtaaagaacgttgtcctcgttgatctc 888
>gb|DT486644.1|DT486644 WS02531.B21_I21 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02531_I21 3', mRNA sequence
Length = 952
Score = 93.7 bits (47), Expect = 2e-017
Identities = 92/107 (85%)
Strand = Plus / Plus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 794 tggttcacaagctcagcaattccccactcgatcgaccatagtgttgtctcaattgcagcg 853
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctc 829
|||||||||||||| || ||||| || |||||||| | |||||||||
Sbjct: 854 acgttgatgttctcaacaatgtaaagaacgttgtcctcgttgatctc 900
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 477 gggtcgttggcgaggaaccaggcattgacgaggatcttg 515
|||| ||||||||| ||||||||||||| |||||||||
Sbjct: 548 gggttgttggcgagccaccaggcattgaccaggatcttg 586
>gb|DT515451.1|DT515451 WS02427.B21_J14 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02427_J14 3', mRNA sequence
Length = 866
Score = 93.7 bits (47), Expect = 2e-017
Identities = 92/107 (85%)
Strand = Plus / Plus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 627 tggttcacaagctcagcaattccccactcgatcgaccatagtgttgtctcaattgcagcg 686
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctc 829
|||||||||||||| || ||||| || |||||||| | |||||||||
Sbjct: 687 acgttgatgttctcaacaatgtaaagaacgttgtcctcgttgatctc 733
>gb|AF302495.1|AF302495 Populus trichocarpa X Populus deltoides cinnamate 4-hydroxylase (C4H)
mRNA, complete cds
Length = 1750
Score = 93.7 bits (47), Expect = 2e-017
Identities = 122/147 (82%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 1009 tggttcacaagctcagcaattccccactcgatcgaccatagtgttgtctcaattgcagcg 950
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcg 842
|||||||||||||| || ||||| || |||||||| | ||||||||| || ||| | |
Sbjct: 949 acgttgatgttctcaacaatgtaaagaacgttgtcctcgttgatctctcctttcttttga 890
Query: 843 gcctcgaggatgtgatccatggcgcac 869
|| ||||||||||| || || ||||||
Sbjct: 889 gcatcgaggatgtggtctattgcgcac 863
Score = 50.1 bits (25), Expect = 3e-004
Identities = 73/89 (82%)
Strand = Plus / Minus
Query: 1260 accttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccg 1319
|||||||| || ||||| ||||| |||||||| | || |||||| | ||| || || |||
Sbjct: 460 accttgtttgtaaagaaagggacagtcatgattctcctcatcttcctccaatgttcaccg 401
Query: 1320 tacaccgtgaacaccatgtcctgcccctt 1348
|| || |||||||||||||| || |||||
Sbjct: 400 tagacagtgaacaccatgtcttgtccctt 372
>gb|AI163968.1|AI163968 A052P60U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 343
Score = 77.8 bits (39), Expect = 1e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || |||||||| |||||||||||||| |||||||| || ||
Sbjct: 324 tggttcacaagctcagcaattccccactcaatcgaccacagtgttgtctcgattgcagca 265
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtc 817
|| ||||||||||| || ||||| || ||||||||
Sbjct: 264 acattgatgttctccacaatgtaaagaacgttgtc 230
>gb|BI129739.1|BI129739 G095P25Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 458
Score = 77.8 bits (39), Expect = 1e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || |||||||| |||||||||||||| |||||||| || ||
Sbjct: 228 tggttcacaagctcagcaattccccactcaatcgaccacagtgttgtctcgattgcagca 169
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtc 817
|| ||||||||||| || ||||| || ||||||||
Sbjct: 168 acattgatgttctccacaatgtaaagaacgttgtc 134
>gb|BI129799.1|BI129799 G095P72Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 373
Score = 77.8 bits (39), Expect = 1e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || |||||||| |||||||||||||| |||||||| || ||
Sbjct: 228 tggttcacaagctcagcaattccccactcaatcgaccacagtgttgtctcgattgcagca 169
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtc 817
|| ||||||||||| || ||||| || ||||||||
Sbjct: 168 acattgatgttctccacaatgtaaagaacgttgtc 134
>gb|BU896032.1|BU896032 X034E05 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 586
Score = 77.8 bits (39), Expect = 1e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || |||||||| |||||||||||||| |||||||| || ||
Sbjct: 316 tggttcacaagctcagcaattccccactcaatcgaccacagtgttgtctcgattgcagca 257
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtc 817
|| ||||||||||| || ||||| || ||||||||
Sbjct: 256 acattgatgttctccacaatgtaaagaacgttgtc 222
>gb|CK099128.1|CK099128 A052P60.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A052P60 5', mRNA sequence
Length = 524
Score = 77.8 bits (39), Expect = 1e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || |||||||| |||||||||||||| |||||||| || ||
Sbjct: 302 tggttcacaagctcagcaattccccactcaatcgaccacagtgttgtctcgattgcagca 243
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtc 817
|| ||||||||||| || ||||| || ||||||||
Sbjct: 242 acattgatgttctccacaatgtaaagaacgttgtc 208
>gb|CV130486.1|CV130486 X9P03a05 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 721
Score = 77.8 bits (39), Expect = 1e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || |||||||| |||||||||||||| ||||| || || ||
Sbjct: 207 tggttcacaagctcagcaattccccactcaatcgaccacagtgttgtctcaattgcagca 148
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtc 817
|| ||||||||||| |||||||| || ||||||||
Sbjct: 147 acattgatgttctccacgatgtaaagaacgttgtc 113
>gb|CV240107.1|CV240107 WS0234.B21_G24 PT-MB-A-13 Populus trichocarpa cDNA clone WS0234_G24
3', mRNA sequence
Length = 683
Score = 75.8 bits (38), Expect = 5e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 605 tggttcacaagctcagcaattccccactcgatcgaccatagtgttgtctcaattgcagcg 664
Query: 783 acgttgatgttctc 796
||||||||||||||
Sbjct: 665 acgttgatgttctc 678
>gb|DT486038.1|DT486038 WS02529.B21_N19 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02529_N19 3', mRNA sequence
Length = 864
Score = 75.8 bits (38), Expect = 5e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 784 tggttcacaagctcagcaattccccactcgatcgaccatagtgttgtctcaattgcagcg 843
Query: 783 acgttgatgttctc 796
||||||||||||||
Sbjct: 844 acgttgatgttctc 857
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 477 gggtcgttggcgaggaaccaggcattgacgaggatcttg 515
|||| ||||||||| ||||||||||||| |||||||||
Sbjct: 538 gggttgttggcgagccaccaggcattgaccaggatcttg 576
>gb|DT488948.1|DT488948 WS02537.B21_O05 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02537_O05 3', mRNA sequence
Length = 869
Score = 75.8 bits (38), Expect = 5e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 791 tggttcacaagctcagcaattccccactcgatcgaccatagtgttgtctcaattgcagcg 850
Query: 783 acgttgatgttctc 796
||||||||||||||
Sbjct: 851 acgttgatgttctc 864
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 477 gggtcgttggcgaggaaccaggcattgacgaggatcttg 515
|||| ||||||||| ||||||||||||| |||||||||
Sbjct: 545 gggttgttggcgagccaccaggcattgaccaggatcttg 583
>gb|DT485976.1|DT485976 WS02529.B21_K24 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02529_K24 3', mRNA sequence
Length = 841
Score = 73.8 bits (37), Expect = 2e-011
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 769 tggttcacaagctcagcaattccccactcgatcgaccatagtgttgtctcaattgcagcg 828
Query: 783 acgttgatgttct 795
|||||||||||||
Sbjct: 829 acgttgatgttct 841
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 477 gggtcgttggcgaggaaccaggcattgacgaggatcttg 515
|||| ||||||||| ||||||||||||| |||||||||
Sbjct: 523 gggttgttggcgagccaccaggcattgaccaggatcttg 561
>gb|CB833355.1|CB833355 R19B01 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 549
Score = 67.9 bits (34), Expect = 1e-009
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 348 tggttcacaagctcagcaattccccactcgatcgaccatagtgttgtctcaattgcagcg 289
Query: 783 acgttgatgt 792
||||||||||
Sbjct: 288 acgttgatgt 279
>dbj|D82812.1|POPCYP73AA Populus kitakamiensis cyp73a gene for cinnamic acid 4-hydroxylase,
complete cds
Length = 5167
Score = 65.9 bits (33), Expect = 5e-009
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 780 gcgacgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttc 836
||||||||||||||||| || ||||| ||||||||||| | ||||||||| ||||||
Sbjct: 3974 gcgacgttgatgttctcaacaatgtaaaggacgttgtcctcgttgatctctcccttc 3918
Score = 52.0 bits (26), Expect = 7e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctc 772
|||||||| ||||| || || ||||||||||||||||| ||||| |||||
Sbjct: 4528 tggttcacaagctcagcaatcccccactcgatcgaccatagtgttgtctc 4479
Score = 42.1 bits (21), Expect = 0.068
Identities = 72/89 (80%)
Strand = Plus / Minus
Query: 1260 accttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccg 1319
|||||||| || ||||| ||||| |||||||| | || |||||| | ||| || || ||
Sbjct: 2797 accttgtttgtaaagaaagggacagtcatgattctcctcatcttcctccaatgctcacca 2738
Query: 1320 tacaccgtgaacaccatgtcctgcccctt 1348
|| || |||||||||||||| || |||||
Sbjct: 2737 tagacagtgaacaccatgtcttgtccctt 2709
>dbj|D82813.1|POPCYP73BB Populus kitakamiensis cyp73b gene for cinnamic acid 4-hydroxylase,
partial cds
Length = 4933
Score = 65.9 bits (33), Expect = 5e-009
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 780 gcgacgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttc 836
||||||||||||||||| || ||||| ||||||||||| | ||||||||| ||||||
Sbjct: 3879 gcgacgttgatgttctcaacaatgtaaaggacgttgtcctcgttgatctctcccttc 3823
Score = 52.0 bits (26), Expect = 7e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctc 772
|||||||| ||||| || || ||||||||||||||||| ||||| |||||
Sbjct: 4719 tggttcacaagctcagcaatcccccactcgatcgaccatagtgttgtctc 4670
Score = 42.1 bits (21), Expect = 0.068
Identities = 72/89 (80%)
Strand = Plus / Minus
Query: 1260 accttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccg 1319
|||||||| || ||||| ||||| |||||||| | || |||||| | ||| || || ||
Sbjct: 2594 accttgtttgtaaagaaagggacagtcatgattctcctcatcttcctccaatgctcacca 2535
Query: 1320 tacaccgtgaacaccatgtcctgcccctt 1348
|| || |||||||||||||| || |||||
Sbjct: 2534 tagacagtgaacaccatgtcttgtccctt 2506
>dbj|D82814.1|POPCYP73CC Populus kitakamiensis cyp73c gene for cinnamic acid 4-hydroxylase,
partial cds
Length = 2923
Score = 60.0 bits (30), Expect = 3e-007
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctg 780
|||||||| ||||| || || |||||||| |||||||||||||| |||||||| ||||
Sbjct: 2128 tggttcacaagctcagcaattccccactcaatcgaccacagtgttgtctcgattgctg 2071
Score = 40.1 bits (20), Expect = 0.27
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 786 ttgatgttctcgacgatgtagaggacgttgtc 817
||||||||||| |||||||| || ||||||||
Sbjct: 1167 ttgatgttctccacgatgtaaagaacgttgtc 1136
>gb|BI128127.1|BI128127 G071P22Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 513
Score = 54.0 bits (27), Expect = 2e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 63 tggttcacaagctcagcaatcccccactcgatcgaccatagtgttgtctcaattgcagcg 4
Query: 783 acg 785
|||
Sbjct: 3 acg 1
>gb|CV274997.1|CV274997 WS0175.B21_A16 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0175_A16 3', mRNA sequence
Length = 320
Score = 52.0 bits (26), Expect = 7e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 780 gcgacgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctc 829
||||||||||||||||| || ||||| || |||||||| | |||||||||
Sbjct: 181 gcgacgttgatgttctcaacaatgtaaagaacgttgtcctcgttgatctc 230
>gb|BU883009.1|BU883009 UM85TB12 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 580
Score = 50.1 bits (25), Expect = 3e-004
Identities = 73/89 (82%)
Strand = Plus / Minus
Query: 1260 accttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccg 1319
|||||||| || ||||| ||||| |||||||| | || |||||| | ||| || || |||
Sbjct: 491 accttgtttgtaaagaaagggacagtcatgattctcctcatcttcctccaatgttcaccg 432
Query: 1320 tacaccgtgaacaccatgtcctgcccctt 1348
|| || |||||||||||||| || |||||
Sbjct: 431 tagacagtgaacaccatgtcttgtccctt 403
>gb|CN518711.1|CN518711 GQ0104.B3_E06 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0104_E06 5', mRNA sequence
Length = 808
Score = 50.1 bits (25), Expect = 3e-004
Identities = 73/89 (82%)
Strand = Plus / Minus
Query: 1260 accttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccg 1319
|||||||| || ||||| ||||| |||||||| | || |||||| | ||| || || |||
Sbjct: 462 accttgtttgtaaagaaagggacagtcatgattctcctcatcttcctccaatgttcaccg 403
Query: 1320 tacaccgtgaacaccatgtcctgcccctt 1348
|| || |||||||||||||| || |||||
Sbjct: 402 tagacagtgaacaccatgtcttgtccctt 374
>gb|CV241662.1|CV241662 WS02512.B21_O01 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02512_O01 3', mRNA sequence
Length = 723
Score = 50.1 bits (25), Expect = 3e-004
Identities = 73/89 (82%)
Strand = Plus / Minus
Query: 1260 accttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccg 1319
|||||||| || ||||| ||||| |||||||| | || |||||| | ||| || || |||
Sbjct: 448 accttgtttgtaaagaaagggacagtcatgattctcctcatcttcctccaatgttcaccg 389
Query: 1320 tacaccgtgaacaccatgtcctgcccctt 1348
|| || |||||||||||||| || |||||
Sbjct: 388 tagacagtgaacaccatgtcttgtccctt 360
>gb|DT474293.1|DT474293 WS01231.BR_H07 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01231_H07 5', mRNA sequence
Length = 890
Score = 50.1 bits (25), Expect = 3e-004
Identities = 73/89 (82%)
Strand = Plus / Minus
Query: 1260 accttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccg 1319
|||||||| || ||||| ||||| |||||||| | || |||||| | ||| || || |||
Sbjct: 498 accttgtttgtaaagaaagggacagtcatgattctcctcatcttcctccaatgttcaccg 439
Query: 1320 tacaccgtgaacaccatgtcctgcccctt 1348
|| || |||||||||||||| || |||||
Sbjct: 438 tagacagtgaacaccatgtcttgtccctt 410
>gb|DT480764.1|DT480764 WS02529.BR_N19 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02529_N19 5', mRNA sequence
Length = 805
Score = 50.1 bits (25), Expect = 3e-004
Identities = 73/89 (82%)
Strand = Plus / Minus
Query: 1260 accttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccg 1319
|||||||| || ||||| ||||| |||||||| | || |||||| | ||| || || |||
Sbjct: 488 accttgtttgtaaagaaagggacagtcatgattctcctcatcttcctccaatgttcaccg 429
Query: 1320 tacaccgtgaacaccatgtcctgcccctt 1348
|| || |||||||||||||| || |||||
Sbjct: 428 tagacagtgaacaccatgtcttgtccctt 400
>gb|DT497720.1|DT497720 WS0113.BR_E16 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0113_E16
5', mRNA sequence
Length = 705
Score = 50.1 bits (25), Expect = 3e-004
Identities = 73/89 (82%)
Strand = Plus / Minus
Query: 1260 accttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccg 1319
|||||||| || ||||| ||||| |||||||| | || |||||| | ||| || || |||
Sbjct: 501 accttgtttgtaaagaaagggacagtcatgattctcctcatcttcctccaatgttcaccg 442
Query: 1320 tacaccgtgaacaccatgtcctgcccctt 1348
|| || |||||||||||||| || |||||
Sbjct: 441 tagacagtgaacaccatgtcttgtccctt 413
>gb|DT510779.1|DT510779 WS02427.BR_J14 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02427_J14 5', mRNA sequence
Length = 814
Score = 50.1 bits (25), Expect = 3e-004
Identities = 73/89 (82%)
Strand = Plus / Minus
Query: 1260 accttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccg 1319
|||||||| || ||||| ||||| |||||||| | || |||||| | ||| || || |||
Sbjct: 485 accttgtttgtaaagaaagggacagtcatgattctcctcatcttcctccaatgttcaccg 426
Query: 1320 tacaccgtgaacaccatgtcctgcccctt 1348
|| || |||||||||||||| || |||||
Sbjct: 425 tagacagtgaacaccatgtcttgtccctt 397
>gb|DV464261.1|DV464261 MTUNUL1.P25.C07 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 890
Score = 50.1 bits (25), Expect = 3e-004
Identities = 73/89 (82%)
Strand = Plus / Minus
Query: 1260 accttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccg 1319
|||||||| || ||||| ||||| |||||||| | || |||||| | ||| || || |||
Sbjct: 498 accttgtttgtaaagaaagggacagtcatgattctcctcatcttcctccaatgttcaccg 439
Query: 1320 tacaccgtgaacaccatgtcctgcccctt 1348
|| || |||||||||||||| || |||||
Sbjct: 438 tagacagtgaacaccatgtcttgtccctt 410
>gb|BU869348.1|BU869348 M129A09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 646
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 477 gggtcgttggcgaggaaccaggcattgacgaggatcttg 515
|||| ||||||||| ||||||||||||| |||||||||
Sbjct: 192 gggttgttggcgagccaccaggcattgaccaggatcttg 154
>gb|BU882344.1|BU882344 UM75TG07 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 547
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 477 gggtcgttggcgaggaaccaggcattgacgaggatcttg 515
|||| ||||||||| ||||||||||||| |||||||||
Sbjct: 44 gggttgttggcgagccaccaggcattgaccaggatcttg 6
>gb|CA821732.1|CA821732 RSH06G02 two-month-old roots from clone 'Beaupre' grown for 19 days
under restricted irrigation Populus trichocarpa x
Populus deltoides cDNA 5', mRNA sequence
Length = 607
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 477 gggtcgttggcgaggaaccaggcattgacgaggatcttg 515
|||| ||||||||| ||||||||||||| |||||||||
Sbjct: 168 gggttgttggcgagccaccaggcattgaccaggatcttg 130
>gb|CV250349.1|CV250349 WS0113.B21_E16 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0113_E16 3', mRNA sequence
Length = 686
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 477 gggtcgttggcgaggaaccaggcattgacgaggatcttg 515
|||| ||||||||| ||||||||||||| |||||||||
Sbjct: 525 gggttgttggcgagccaccaggcattgaccaggatcttg 563
>gb|CV273950.1|CV273950 WS01712.B21_L12 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS01712_L12 3', mRNA sequence
Length = 800
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 477 gggtcgttggcgaggaaccaggcattgacgaggatcttg 515
|||| ||||||||| ||||||||||||| |||||||||
Sbjct: 591 gggttgttggcgagccaccaggcattgaccaggatcttg 629
>gb|DT479967.1|DT479967 WS02527.BR_I09 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02527_I09 5', mRNA sequence
Length = 670
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 477 gggtcgttggcgaggaaccaggcattgacgaggatcttg 515
|||| ||||||||| ||||||||||||| |||||||||
Sbjct: 188 gggttgttggcgagccaccaggcattgaccaggatcttg 150
>gb|AI162374.1|AI162374 A016P55U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 595
Score = 44.1 bits (22), Expect = 0.017
Identities = 49/57 (85%), Gaps = 1/57 (1%)
Strand = Plus / Minus
Query: 780 gcgacgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttc 836
||||||||||||||||| || ||||| | ||||||||| | |||| |||| ||||||
Sbjct: 471 gcgacgttgatgttctcaacaatgta-aagacgttgtcctcgttgntctctcccttc 416
>gb|BU897427.1|BU897427 X057F02 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 407
Score = 44.1 bits (22), Expect = 0.017
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgacca 760
|||||||| ||||| || || |||||||||||||||||
Sbjct: 45 tggttcacaagctcagcaatcccccactcgatcgacca 8
>gb|CF235170.1|CF235170 PtaJXT0019F5F0511 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 655
Score = 44.1 bits (22), Expect = 0.017
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgacca 760
|||||||| ||||| || || |||||||||||||||||
Sbjct: 38 tggttcacaagctcagcaatcccccactcgatcgacca 1
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 148,317
Number of Sequences: 369679
Number of extensions: 148317
Number of successful extensions: 38056
Number of sequences better than 0.5: 66
Number of HSP's better than 0.5 without gapping: 63
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 37834
Number of HSP's gapped (non-prelim): 224
length of query: 1689
length of database: 203,408,664
effective HSP length: 20
effective length of query: 1669
effective length of database: 196,015,084
effective search space: 327149175196
effective search space used: 327149175196
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)