BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521462.2.2
(1311 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX172891.1|CX172891 D07_69-73_07.ab1 leaf inoculated wit... 184 6e-045
gb|BU884119.1|BU884119 R006B07 Populus root cDNA library Po... 180 9e-044
gb|BU886401.1|BU886401 R045A05 Populus root cDNA library Po... 180 9e-044
gb|DT488868.1|DT488868 WS02537.B21_K16 PT-MB-N-A-15 Populus... 167 1e-039
gb|DT488933.1|DT488933 WS02537.B21_N13 PT-MB-N-A-15 Populus... 167 1e-039
gb|DT515781.1|DT515781 WS02429.B21.1_I03 PTxD-ICC-N-A-14 Po... 161 8e-038
gb|CV245071.1|CV245071 WS0256.B21_G13 PT-MB-N-A-15 Populus ... 153 2e-035
gb|CV256227.1|CV256227 WS0243.B21_E14 PTxD-ICC-N-A-14 Popul... 153 2e-035
gb|CV280148.1|CV280148 WS0135.B21_A14 PTxD-IL-FL-A-4 Populu... 149 3e-034
gb|DT503000.1|DT503000 WS0135.BR_A14 PTxD-IL-FL-A-4 Populus... 149 3e-034
gb|CX655055.1|CX655055 PO01004C07 Poplar SC cDNA library Po... 145 5e-033
gb|CX656379.1|CX656379 PO01001B08 Poplar SC cDNA library Po... 141 8e-032
gb|DT511080.1|DT511080 WS02429.BR_I03 PTxD-ICC-N-A-14 Popul... 139 3e-031
gb|BU833637.1|BU833637 T050F09 Populus apical shoot cDNA li... 131 7e-029
gb|BU870987.1|BU870987 Q025F05 Populus flower cDNA library ... 129 3e-028
gb|BU881112.1|BU881112 UM58TG08 Populus flower cDNA library... 129 3e-028
gb|DT470772.1|DT470772 WS01210.BR_M22 PT-GT-FL-A-3 Populus ... 129 3e-028
gb|DT473198.1|DT473198 WS01228.BR_O04 PT-GT-FL-A-3 Populus ... 129 3e-028
gb|CX659721.1|CX659721 PO01013B11 Poplar SC cDNA library Po... 125 5e-027
gb|AJ777153.1|AJ777153 AJ777153 Populus euphratica root 3-6... 121 7e-026
gb|CF237076.1|CF237076 PtajxtjxoF4F0412 Poplar cDNA library... 115 4e-024
gb|AI162104.1|AI162104 A012P24U Hybrid aspen plasmid librar... 113 2e-023
gb|CV283287.1|CV283287 WS0186.B21_O21 PTxD-IL-N-A-9 Populus... 113 2e-023
gb|DN500080.1|DN500080 UB14CPE07.5pR Populus active cambium... 101 7e-020
gb|AJ772236.1|AJ772236 AJ772236 Populus euphratica shoot in... 100 3e-019
gb|BU831078.1|BU831078 T016H09 Populus apical shoot cDNA li... 84 2e-014
gb|BI121646.1|BI121646 F043P37Y Populus flower cDNA library... 82 6e-014
gb|BU817230.1|BU817230 UA14CPE01 Populus tremula cambium cD... 76 4e-012
gb|BI120916.1|BI120916 F025P07Y Populus flower cDNA library... 68 9e-010
gb|CK090790.1|CK090790 F025P07.3pR Populus flower cDNA libr... 66 4e-009
gb|BU871450.1|BU871450 Q030G04 Populus flower cDNA library ... 52 6e-005
gb|CK113033.1|CK113033 UR100TH09 Populus root cDNA library ... 52 6e-005
gb|CV282917.1|CV282917 WS0185.B21_P04 PTxD-IL-N-A-9 Populus... 52 6e-005
gb|BU832704.1|BU832704 T037C08 Populus apical shoot cDNA li... 50 2e-004
gb|CV233095.1|CV233095 WS0199.B21_J21 PT-DX-N-A-10 Populus ... 50 2e-004
gb|BU820791.1|BU820791 UB14CPE07 Populus tremula cambium cD... 48 9e-004
gb|CV231383.1|CV231383 WS0194.B21_G03 PT-DX-N-A-10 Populus ... 48 9e-004
gb|CV232622.1|CV232622 WS0198.B21_C22 PT-DX-N-A-10 Populus ... 48 9e-004
gb|BU898310.1|BU898310 X078F06 Populus wood cDNA library Po... 46 0.003
gb|BI138468.1|BI138468 F107P19Y Populus flower cDNA library... 40 0.21
gb|CX184999.1|CX184999 F11_45-67_11.ab1 leaf inoculated wit... 40 0.21
>gb|CX172891.1|CX172891 D07_69-73_07.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 705
Score = 184 bits (93), Expect = 6e-045
Identities = 240/289 (83%)
Strand = Plus / Plus
Query: 406 gaatcagaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcg 465
||||| ||||| ||||| ||||| || ||||||||||| || || || || || || ||
Sbjct: 407 gaatctgaaacggacagtgaagagtccgatgtgagtgggtcagaaggagatgagacgacg 466
Query: 466 tggatttcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgac 525
||||| ||||||||||||| ||| || |||||||| || ||||| || ||||||||
Sbjct: 467 tggatatcatggttctgtaatctaagaggaaatgaattcttttgtgaagtggatgatgat 526
Query: 526 tacatacaagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactat 585
|||||||||||||| || |||||||||||| |||||| |||||||| ||||||||||||
Sbjct: 527 tacatacaagatgactttaacctctgtgggttaagcactcaagttccttattatgactat 586
Query: 586 gcacttgatctgatattagatgttgaatcttcccatggtgatatgttgacagaagagcaa 645
|| |||||| |||| || ||||| || |||||||||||||||||||| ||||| || |||
Sbjct: 587 gctcttgatttgattttggatgtcgagtcttcccatggtgatatgttcacagaggaacaa 646
Query: 646 aatgaacttattgaatcagctgctgagatgctctatggattgattcatg 694
||||| | ||||||| || || |||||||| |||||| |||||||||
Sbjct: 647 aatgagttggttgaatctgcagcagagatgctttatggactgattcatg 695
>gb|BU884119.1|BU884119 R006B07 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 760
Score = 180 bits (91), Expect = 9e-044
Identities = 238/287 (82%)
Strand = Plus / Plus
Query: 418 gacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatgg 477
||||||||||| || ||||| |||||||| ||||| || || || |||||||| |||||
Sbjct: 251 gacagcgaagagtctgatgttagtggttccgatggagatgagacgtcgtggatcacatgg 310
Query: 478 ttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagat 537
|| || | ||| || |||||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 311 ttttgcaatctaagagggaatgaattcttttgtgaagttgatgatgattacatacaagat 370
Query: 538 gatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctg 597
||||| |||||||||||| |||||| ||||||||||| || || ||||| |||||| ||
Sbjct: 371 gattttaacctctgtgggttaagcagtcaagttccatactacgattatgcccttgatttg 430
Query: 598 atattagatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaacttatt 657
|| || ||| ||||||| || |||||||||||||| ||||| || || |||||| | ||
Sbjct: 431 attttggatattgaatcctctcatggtgatatgttcacagaggaacagaatgaattggtt 490
Query: 658 gaatcagctgctgagatgctctatggattgattcatgttcggtatat 704
||||| || || |||||||| |||||||||||||||| ||| |||||
Sbjct: 491 gaatctgcagcagagatgctttatggattgattcatgctcgatatat 537
>gb|BU886401.1|BU886401 R045A05 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 554
Score = 180 bits (91), Expect = 9e-044
Identities = 238/287 (82%)
Strand = Plus / Plus
Query: 418 gacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatgg 477
||||||||||| || ||||| |||||||| ||||| || || || |||||||| |||||
Sbjct: 260 gacagcgaagagtctgatgttagtggttccgatggagatgagacgtcgtggatcacatgg 319
Query: 478 ttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagat 537
|| || | ||| || |||||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 320 ttttgcaatctaagagggaatgaattcttttgtgaagttgatgatgattacatacaagat 379
Query: 538 gatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctg 597
||||| |||||||||||| |||||| ||||||||||| || || ||||| |||||| ||
Sbjct: 380 gattttaacctctgtgggttaagcagtcaagttccatactacgattatgcccttgatttg 439
Query: 598 atattagatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaacttatt 657
|| || ||| ||||||| || |||||||||||||| ||||| || || |||||| | ||
Sbjct: 440 attttggatattgaatcctctcatggtgatatgttcacagaggaacagaatgaattggtt 499
Query: 658 gaatcagctgctgagatgctctatggattgattcatgttcggtatat 704
||||| || || |||||||| |||||||||||||||| ||| |||||
Sbjct: 500 gaatctgcagcagagatgctttatggattgattcatgctcgatatat 546
>gb|DT488868.1|DT488868 WS02537.B21_K16 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02537_K16 3', mRNA sequence
Length = 938
Score = 167 bits (84), Expect = 1e-039
Identities = 351/440 (79%)
Strand = Plus / Minus
Query: 433 gatgtgagtggttctgatggggaagatacttcgtggatttcatggttctgtagcttaaag 492
||||| |||||||||||||| || ||||| || ||||| |||||||| || | ||
Sbjct: 919 gatgttagtggttctgatggagatgatacatcttggatctcatggttttgcaatttgcgt 860
Query: 493 ggcaatgaatttttctgtgaggttgatgatgactacatacaagatgatttcaacctctgt 552
|| ||||||||||||||||| |||||||| || ||||| || |||||||| || || |||
Sbjct: 859 ggaaatgaatttttctgtgaagttgatgacgagtacattcaggatgattttaatctttgt 800
Query: 553 gggctaagcaaccaagttccatattatgactatgcacttgatctgatattagatgttgaa 612
|| | |||| ||||||||||| ||||| |||||||||||||| ||||| |||||||||
Sbjct: 799 ggattgagcagtcaagttccatactatgattatgcacttgatcttatattggatgttgaa 740
Query: 613 tcttcccatggtgatatgttgacagaagagcaaaatgaacttattgaatcagctgctgag 672
||||| |||||||||||||| || ||||| || ||||| | | ||||| || || |||
Sbjct: 739 tcttctcatggtgatatgttcaccgaagaacagaatgagttggtggaatccgcagcagag 680
Query: 673 atgctctatggattgattcatgttcggtatattattacaagtaaagggctgtccgcaatg 732
|||||||| || | |||||||| || || || |||| || || ||| |||| ||||||
Sbjct: 679 atgctctacggtcttattcatgtgcgttacatacttactagcaaggggatgtctgcaatg 620
Query: 733 ctggataagtacaggaacgttgagttcggcagatgccctcgagtgaattgcagcggccaa 792
|||| ||||||| ||| ||| || || |||||||| ||||| ||||| | || ||
Sbjct: 619 ttggaaaagtacaaaaactatgactttgggagatgcccacgagtttattgctgtggacag 560
Query: 793 ccatgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaagatttactgc 852
|| |||||||| ||||| ||||| || |||||||||| ||||| || || || |||||
Sbjct: 559 ccctgccttccagttggtcaatcagacattcctcgttctagtactgtcaaaatctactgt 500
Query: 853 cctagatgtgaagacatcta 872
|| | |||||||||||||||
Sbjct: 499 ccaaaatgtgaagacatcta 480
>gb|DT488933.1|DT488933 WS02537.B21_N13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02537_N13 3', mRNA sequence
Length = 933
Score = 167 bits (84), Expect = 1e-039
Identities = 351/440 (79%)
Strand = Plus / Minus
Query: 433 gatgtgagtggttctgatggggaagatacttcgtggatttcatggttctgtagcttaaag 492
||||| |||||||||||||| || ||||| || ||||| |||||||| || | ||
Sbjct: 912 gatgttagtggttctgatggagatgatacatcttggatctcatggttttgcaatttgcgt 853
Query: 493 ggcaatgaatttttctgtgaggttgatgatgactacatacaagatgatttcaacctctgt 552
|| ||||||||||||||||| |||||||| || ||||| || |||||||| || || |||
Sbjct: 852 ggaaatgaatttttctgtgaagttgatgacgagtacattcaggatgattttaatctttgt 793
Query: 553 gggctaagcaaccaagttccatattatgactatgcacttgatctgatattagatgttgaa 612
|| | |||| ||||||||||| ||||| |||||||||||||| ||||| |||||||||
Sbjct: 792 ggattgagcagtcaagttccatactatgattatgcacttgatcttatattggatgttgaa 733
Query: 613 tcttcccatggtgatatgttgacagaagagcaaaatgaacttattgaatcagctgctgag 672
||||| |||||||||||||| || ||||| || ||||| | | ||||| || || |||
Sbjct: 732 tcttctcatggtgatatgttcaccgaagaacagaatgagttggtggaatccgcagcagag 673
Query: 673 atgctctatggattgattcatgttcggtatattattacaagtaaagggctgtccgcaatg 732
|||||||| || | |||||||| || || || |||| || || ||| |||| ||||||
Sbjct: 672 atgctctacggtcttattcatgtgcgttacatacttactagcaaggggatgtctgcaatg 613
Query: 733 ctggataagtacaggaacgttgagttcggcagatgccctcgagtgaattgcagcggccaa 792
|||| ||||||| ||| ||| || || |||||||| ||||| ||||| | || ||
Sbjct: 612 ttggaaaagtacaaaaactatgactttgggagatgcccacgagtttattgctgtggacag 553
Query: 793 ccatgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaagatttactgc 852
|| |||||||| ||||| ||||| || |||||||||| ||||| || || || |||||
Sbjct: 552 ccctgccttccggttggtcaatcagacattcctcgttctagtactgtcaaaatctactgt 493
Query: 853 cctagatgtgaagacatcta 872
|| | |||||||||||||||
Sbjct: 492 ccaaaatgtgaagacatcta 473
>gb|DT515781.1|DT515781 WS02429.B21.1_I03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_I03 3', mRNA sequence
Length = 902
Score = 161 bits (81), Expect = 8e-038
Identities = 303/377 (80%)
Strand = Plus / Minus
Query: 496 aatgaatttttctgtgaggttgatgatgactacatacaagatgatttcaacctctgtggg 555
||||||||||||||||| |||||||| || ||||| || |||||||| || || |||||
Sbjct: 856 aatgaatttttctgtgaagttgatgacgagtacattcaggatgattttaatctttgtgga 797
Query: 556 ctaagcaaccaagttccatattatgactatgcacttgatctgatattagatgttgaatct 615
| |||| ||||||||||| ||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 796 ttgagcagtcaagttccatactatgattatgcacttgatcttatattggatgttgaatct 737
Query: 616 tcccatggtgatatgttgacagaagagcaaaatgaacttattgaatcagctgctgagatg 675
|| |||||||||||||| || ||||| || ||||| | | ||||| || || ||||||
Sbjct: 736 tctcatggtgatatgttcaccgaagaacagaatgagttggtggaatccgcagcagagatg 677
Query: 676 ctctatggattgattcatgttcggtatattattacaagtaaagggctgtccgcaatgctg 735
||||| || | |||||||| || || || |||| || || ||| |||| |||||| ||
Sbjct: 676 ctctacggtcttattcatgtgcgttacatacttactagcaaggggatgtctgcaatgttg 617
Query: 736 gataagtacaggaacgttgagttcggcagatgccctcgagtgaattgcagcggccaacca 795
|| ||||||| ||| ||| || || |||||||| ||||| ||||| | || || ||
Sbjct: 616 gagaagtacaaaaactatgactttgggagatgcccacgagtttattgctgtggacagccc 557
Query: 796 tgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaagatttactgccct 855
|||||||| ||||| ||||| || |||||||||| ||||| || || || ||||| ||
Sbjct: 556 tgccttccagttggtcaatcagacattcctcgttctagtactgtcaaaatctactgtcca 497
Query: 856 agatgtgaagacatcta 872
| |||||||||||||||
Sbjct: 496 aaatgtgaagacatcta 480
>gb|CV245071.1|CV245071 WS0256.B21_G13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0256_G13 3', mRNA sequence
Length = 855
Score = 153 bits (77), Expect = 2e-035
Identities = 302/377 (80%)
Strand = Plus / Minus
Query: 496 aatgaatttttctgtgaggttgatgatgactacatacaagatgatttcaacctctgtggg 555
||||||||||||||||| ||||||||||| ||||| || |||||||| || || |||||
Sbjct: 851 aatgaatttttctgtgaagttgatgatgagtacattcaggatgattttaatctttgtgga 792
Query: 556 ctaagcaaccaagttccatattatgactatgcacttgatctgatattagatgttgaatct 615
|| |||| ||||||||||| ||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 791 ctgagcagtcaagttccatactatgattatgcacttgatcttatattggatgttgaatct 732
Query: 616 tcccatggtgatatgttgacagaagagcaaaatgaacttattgaatcagctgctgagatg 675
|| |||||||||||||| || ||||| || ||||| | | ||||| || || ||||||
Sbjct: 731 tctcatggtgatatgttcactgaagaacagaatgagttggtggaatctgcagcagagatg 672
Query: 676 ctctatggattgattcatgttcggtatattattacaagtaaagggctgtccgcaatgctg 735
|| || || | |||||||| || || || |||| || || ||| |||| || ||| ||
Sbjct: 671 ctttacggtcttattcatgtgcgttacatacttactagcaaggggatgtctgccatgttg 612
Query: 736 gataagtacaggaacgttgagttcggcagatgccctcgagtgaattgcagcggccaacca 795
|| ||||||| ||| ||| || || |||||||| ||||| ||||| | || || ||
Sbjct: 611 gagaagtacaaaaactatgactttgggagatgcccacgagtttattgctgtggacagccc 552
Query: 796 tgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaagatttactgccct 855
||| | || ||||| ||||| || |||||||||||||||| || || || ||||| ||
Sbjct: 551 tgcttcccagttggtcaatcagacattcctcgttcaagtactgtcaaaatctactgtcca 492
Query: 856 agatgtgaagacatcta 872
| |||||||||||||||
Sbjct: 491 aaatgtgaagacatcta 475
>gb|CV256227.1|CV256227 WS0243.B21_E14 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0243_E14 3', mRNA sequence
Length = 902
Score = 153 bits (77), Expect = 2e-035
Identities = 302/377 (80%)
Strand = Plus / Minus
Query: 496 aatgaatttttctgtgaggttgatgatgactacatacaagatgatttcaacctctgtggg 555
||||||||||||||||| ||||||||||| ||||| || |||||||| || || |||||
Sbjct: 833 aatgaatttttctgtgaagttgatgatgagtacattcaggatgattttaatctttgtgga 774
Query: 556 ctaagcaaccaagttccatattatgactatgcacttgatctgatattagatgttgaatct 615
|| |||| ||||||||||| ||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 773 ctgagcagtcaagttccatactatgattatgcacttgatcttatattggatgttgaatct 714
Query: 616 tcccatggtgatatgttgacagaagagcaaaatgaacttattgaatcagctgctgagatg 675
|| |||||||||||||| || ||||| || ||||| | | ||||| || || ||||||
Sbjct: 713 tctcatggtgatatgttcactgaagaacagaatgagttggtggaatctgcagcagagatg 654
Query: 676 ctctatggattgattcatgttcggtatattattacaagtaaagggctgtccgcaatgctg 735
|| || || | |||||||| || || || |||| || || ||| |||| || ||| ||
Sbjct: 653 ctttacggtcttattcatgtgcgttacatacttactagcaaggggatgtctgccatgttg 594
Query: 736 gataagtacaggaacgttgagttcggcagatgccctcgagtgaattgcagcggccaacca 795
|| ||||||| ||| ||| || || |||||||| ||||| ||||| | || || ||
Sbjct: 593 gagaagtacaaaaactatgactttgggagatgcccacgagtttattgctgtggacagccc 534
Query: 796 tgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaagatttactgccct 855
||| | || ||||| ||||| || |||||||||||||||| || || || ||||| ||
Sbjct: 533 tgcttcccagttggtcaatcagacattcctcgttcaagtactgtcaaaatctactgtcca 474
Query: 856 agatgtgaagacatcta 872
| |||||||||||||||
Sbjct: 473 aaatgtgaagacatcta 457
>gb|CV280148.1|CV280148 WS0135.B21_A14 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0135_A14 3', mRNA sequence
Length = 985
Score = 149 bits (75), Expect = 3e-034
Identities = 135/155 (87%)
Strand = Plus / Minus
Query: 496 aatgaatttttctgtgaggttgatgatgactacatacaagatgatttcaacctctgtggg 555
||||||||||||||||| ||||||||||| ||||| || |||||||| || || |||||
Sbjct: 823 aatgaatttttctgtgaagttgatgatgagtacattcaggatgattttaatctttgtgga 764
Query: 556 ctaagcaaccaagttccatattatgactatgcacttgatctgatattagatgttgaatct 615
|| |||| ||||||||||| ||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 763 ctgagcagtcaagttccatactatgattatgcacttgatcttatattggatgttgaatct 704
Query: 616 tcccatggtgatatgttgacagaagagcaaaatga 650
|| |||||||||||||| || ||||| || |||||
Sbjct: 703 tctcatggtgatatgttcactgaagaacagaatga 669
>gb|DT503000.1|DT503000 WS0135.BR_A14 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0135_A14 5', mRNA sequence
Length = 954
Score = 149 bits (75), Expect = 3e-034
Identities = 135/155 (87%)
Strand = Plus / Plus
Query: 496 aatgaatttttctgtgaggttgatgatgactacatacaagatgatttcaacctctgtggg 555
||||||||||||||||| ||||||||||| ||||| || |||||||| || || |||||
Sbjct: 648 aatgaatttttctgtgaagttgatgatgagtacattcaggatgattttaatctttgtgga 707
Query: 556 ctaagcaaccaagttccatattatgactatgcacttgatctgatattagatgttgaatct 615
|| |||| ||||||||||| ||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 708 ctgagcagtcaagttccatactatgattatgcacttgatcttatattggatgttgaatct 767
Query: 616 tcccatggtgatatgttgacagaagagcaaaatga 650
|| |||||||||||||| || ||||| || |||||
Sbjct: 768 tctcatggtgatatgttcactgaagaacagaatga 802
>gb|CX655055.1|CX655055 PO01004C07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01004C07 5', mRNA sequence
Length = 702
Score = 145 bits (73), Expect = 5e-033
Identities = 301/377 (79%)
Strand = Plus / Plus
Query: 496 aatgaatttttctgtgaggttgatgatgactacatacaagatgatttcaacctctgtggg 555
||||||||||||||||| ||||||||||| ||||| || |||||||| || || |||||
Sbjct: 267 aatgaatttttctgtgaagttgatgatgagtacattcaggatgattttaatctttgtgga 326
Query: 556 ctaagcaaccaagttccatattatgactatgcacttgatctgatattagatgttgaatct 615
|| |||| ||||||||||| ||||| ||||| |||||||| ||||| ||||||||||||
Sbjct: 327 ctgagcagtcaagttccatactatgattatgctcttgatcttatattggatgttgaatct 386
Query: 616 tcccatggtgatatgttgacagaagagcaaaatgaacttattgaatcagctgctgagatg 675
|| |||||||||||||| || ||||| || ||||| | | ||||| || || ||||||
Sbjct: 387 tctcatggtgatatgttcactgaagaacagaatgagttggtggaatctgcagcagagatg 446
Query: 676 ctctatggattgattcatgttcggtatattattacaagtaaagggctgtccgcaatgctg 735
|| || || | |||||||| || || || |||| || || ||| |||| |||||| ||
Sbjct: 447 ctttacggtcttattcatgtgcgttacatacttactagcaaggggatgtctgcaatgttg 506
Query: 736 gataagtacaggaacgttgagttcggcagatgccctcgagtgaattgcagcggccaacca 795
|| ||||||| ||| ||| || || |||||||| ||||| ||||| | || || ||
Sbjct: 507 gagaagtacaaaaactatgactttgggagatgcccacgagtttattgctgtggacagccc 566
Query: 796 tgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaagatttactgccct 855
||| | || ||||| ||||| || |||||||||| ||||| || || || ||||| ||
Sbjct: 567 tgcttcccagttggtcaatcagacattcctcgttcgagtactgtcaaaatctactgtcca 626
Query: 856 agatgtgaagacatcta 872
| |||||||||||||||
Sbjct: 627 aaatgtgaagacatcta 643
>gb|CX656379.1|CX656379 PO01001B08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01001B08 5', mRNA sequence
Length = 679
Score = 141 bits (71), Expect = 8e-032
Identities = 134/155 (86%)
Strand = Plus / Plus
Query: 496 aatgaatttttctgtgaggttgatgatgactacatacaagatgatttcaacctctgtggg 555
||||||||||||||||| ||||||||||| ||||| || |||||||| || || |||||
Sbjct: 262 aatgaatttttctgtgaagttgatgatgagtacattcaggatgattttaatctttgtgga 321
Query: 556 ctaagcaaccaagttccatattatgactatgcacttgatctgatattagatgttgaatct 615
|| |||| ||||||||||| ||||| ||||| |||||||| ||||| ||||||||||||
Sbjct: 322 ctgagcagtcaagttccatactatgattatgctcttgatcttatattggatgttgaatct 381
Query: 616 tcccatggtgatatgttgacagaagagcaaaatga 650
|| |||||||||||||| || ||||| || |||||
Sbjct: 382 tctcatggtgatatgttcactgaagaacagaatga 416
>gb|DT511080.1|DT511080 WS02429.BR_I03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_I03 5', mRNA sequence
Length = 888
Score = 139 bits (70), Expect = 3e-031
Identities = 181/218 (83%)
Strand = Plus / Plus
Query: 433 gatgtgagtggttctgatggggaagatacttcgtggatttcatggttctgtagcttaaag 492
||||| |||||||||||||| || ||||| || ||||| |||||||| || | ||
Sbjct: 559 gatgttagtggttctgatggagatgatacatcttggatctcatggttttgcaatttgcgt 618
Query: 493 ggcaatgaatttttctgtgaggttgatgatgactacatacaagatgatttcaacctctgt 552
|| ||||||||||||||||| |||||||| || ||||| || |||||||| || || |||
Sbjct: 619 ggaaatgaatttttctgtgaagttgatgacgagtacattcaggatgattttaatctttgt 678
Query: 553 gggctaagcaaccaagttccatattatgactatgcacttgatctgatattagatgttgaa 612
|| | |||| ||||||||||| ||||| |||||||||||||| ||||| |||||||||
Sbjct: 679 ggattgagcagtcaagttccatactatgattatgcacttgatcttatattggatgttgaa 738
Query: 613 tcttcccatggtgatatgttgacagaagagcaaaatga 650
||||| |||||||||||||| || ||||| || |||||
Sbjct: 739 tcttctcatggtgatatgttcaccgaagaacagaatga 776
>gb|BU833637.1|BU833637 T050F09 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 718
Score = 131 bits (66), Expect = 7e-029
Identities = 180/218 (82%)
Strand = Plus / Plus
Query: 433 gatgtgagtggttctgatggggaagatacttcgtggatttcatggttctgtagcttaaag 492
||||| |||||||||||||| || ||||| || ||||| |||||||| || | ||
Sbjct: 446 gatgttagtggttctgatggagatgatacatcttggatctcatggttttgcaatttgcgt 505
Query: 493 ggcaatgaatttttctgtgaggttgatgatgactacatacaagatgatttcaacctctgt 552
|| ||||||||||||||||| |||||||| || ||||| || |||||||| || || |||
Sbjct: 506 ggaaatgaatttttctgtgaagttgatgacgagtacattcaggatgattttaatctttgt 565
Query: 553 gggctaagcaaccaagttccatattatgactatgcacttgatctgatattagatgttgaa 612
|| | |||| ||||||||||| ||||| |||||||||||||| ||||| |||||||||
Sbjct: 566 ggattgagcagtcaagttccatactatgattatgcacttgatcttatattggatgttgaa 625
Query: 613 tcttcccatggtgatatgttgacagaagagcaaaatga 650
||||| || ||||||||||| || ||||| || |||||
Sbjct: 626 tcttctcacggtgatatgttcactgaagaacagaatga 663
>gb|BU870987.1|BU870987 Q025F05 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 558
Score = 129 bits (65), Expect = 3e-028
Identities = 164/197 (83%)
Strand = Plus / Plus
Query: 418 gacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatgg 477
||||||||||| || ||||| |||||||| ||||| || || || |||||||| ||||||
Sbjct: 220 gacagcgaagagtctgatgttagtggttccgatggagatgagacgtcgtggatctcatgg 279
Query: 478 ttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagat 537
|| || | ||| || |||||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 280 ttttgcaatctaagagggaatgaattcttttgtgaagttgatgatgattacatacaagat 339
Query: 538 gatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctg 597
||||| |||||||||||| |||||| ||||||||||| || || ||||| |||||| ||
Sbjct: 340 gattttaacctctgtgggttaagcagtcaagttccatactacgattatgcccttgatttg 399
Query: 598 atattagatgttgaatc 614
|| || ||| |||||||
Sbjct: 400 attttggatattgaatc 416
Score = 48.1 bits (24), Expect = 9e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 657 tgaatcagctgctgagatgctctatggattgattcatgttcggtatat 704
|||||| || || |||||||| |||||||||||||||| ||| |||||
Sbjct: 444 tgaatctgcagcagagatgctttatggattgattcatgctcgatatat 491
>gb|BU881112.1|BU881112 UM58TG08 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 608
Score = 129 bits (65), Expect = 3e-028
Identities = 164/197 (83%)
Strand = Plus / Plus
Query: 418 gacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatgg 477
||||||||||| || ||||| |||||||| ||||| || || || |||||||| ||||||
Sbjct: 287 gacagcgaagagtctgatgttagtggttccgatggagatgagacgtcgtggatctcatgg 346
Query: 478 ttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagat 537
|| || || ||| || |||||||| || |||| ||||||||||| ||||||||||||
Sbjct: 347 ttttgcagtctaagagggaatgaattcttttgtggagttgatgatgattacatacaagat 406
Query: 538 gatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctg 597
||||| |||||||||||| |||||| ||||||||||| || || ||||| |||||| ||
Sbjct: 407 gattttaacctctgtgggttaagcagtcaagttccatactacgattatgcccttgatttg 466
Query: 598 atattagatgttgaatc 614
|| || ||| |||||||
Sbjct: 467 attttggatattgaatc 483
Score = 52.0 bits (26), Expect = 6e-005
Identities = 74/90 (82%)
Strand = Plus / Plus
Query: 656 ttgaatcagctgctgagatgctctatggattgattcatgttcggtatattattacaagta 715
||||||| || || |||||||| |||||||||||||||| ||| ||||| | || || |
Sbjct: 510 ttgaatctgcagcagagatgctttatggattgattcatgctcgatatatattgaccagca 569
Query: 716 aagggctgtccgcaatgctggataagtaca 745
||||| || | || |||||||| |||||||
Sbjct: 570 aagggatgacagctatgctggagaagtaca 599
>gb|DT470772.1|DT470772 WS01210.BR_M22 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01210_M22 5', mRNA sequence
Length = 682
Score = 129 bits (65), Expect = 3e-028
Identities = 179/217 (82%)
Strand = Plus / Plus
Query: 406 gaatcagaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcg 465
||||| ||||| ||||| ||||| || ||||||||||| || || || || || || ||
Sbjct: 394 gaatctgaaacggacagtgaagagtccgatgtgagtgggtcagaaggagatgagacgacg 453
Query: 466 tggatttcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgac 525
||||| ||||||||||||| ||| || |||||||| || ||||| || ||||||||
Sbjct: 454 tggatctcatggttctgtaatctaagaggaaatgaattcttttgtgaagtggatgatgat 513
Query: 526 tacatacaagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactat 585
|||||||||||||| || |||||||||||| |||||| |||||||| ||||||||||||
Sbjct: 514 tacatacaagatgactttaacctctgtgggttaagcactcaagttccttattatgactat 573
Query: 586 gcacttgatctgatattagatgttgaatcttcccatg 622
|| |||||| |||| || ||||| || ||||| ||||
Sbjct: 574 gctcttgatttgattttggatgtcgagtcttcgcatg 610
>gb|DT473198.1|DT473198 WS01228.BR_O04 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01228_O04 5', mRNA sequence
Length = 855
Score = 129 bits (65), Expect = 3e-028
Identities = 179/217 (82%)
Strand = Plus / Plus
Query: 406 gaatcagaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcg 465
||||| ||||| ||||| ||||| || ||||||||||| || || || || || || ||
Sbjct: 393 gaatctgaaacggacagtgaagagtccgatgtgagtgggtcagaaggagatgagacgacg 452
Query: 466 tggatttcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgac 525
||||| ||||||||||||| ||| || |||||||| || ||||| || ||||||||
Sbjct: 453 tggatctcatggttctgtaatctaagaggaaatgaattcttttgtgaagtggatgatgat 512
Query: 526 tacatacaagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactat 585
|||||||||||||| || |||||||||||| |||||| |||||||| ||||||||||||
Sbjct: 513 tacatacaagatgactttaacctctgtgggttaagcactcaagttccttattatgactat 572
Query: 586 gcacttgatctgatattagatgttgaatcttcccatg 622
|| |||||| |||| || ||||| || ||||| ||||
Sbjct: 573 gctcttgatttgattttggatgtcgagtcttcgcatg 609
Score = 44.1 bits (22), Expect = 0.013
Identities = 139/178 (78%)
Strand = Plus / Plus
Query: 656 ttgaatcagctgctgagatgctctatggattgattcatgttcggtatattattacaagta 715
||||||| || || |||||||| |||||| ||||||||| ||| || || | || || |
Sbjct: 628 ttgaatctgcagcagagatgctttatggactgattcatgctcgatacatattgaccagca 687
Query: 716 aagggctgtccgcaatgctggataagtacaggaacgttgagttcggcagatgccctcgag 775
| ||| || | || |||||||| ||||||| |||| ||| || || |||||||| |||
Sbjct: 688 aggggatggcagctatgctggacaagtacaagaactatgactttgggagatgcccaagag 747
Query: 776 tgaattgcagcggccaaccatgccttcctgttgggcaatcggatgttcctcgttcaag 833
| | ||| | || ||||| |||||||||||||| ||||| || ||||||| |||||
Sbjct: 748 ttcactgctgtggacaaccttgccttcctgttggtcaatcagacattcctcggtcaag 805
>gb|CX659721.1|CX659721 PO01013B11 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01013B11 5', mRNA sequence
Length = 348
Score = 125 bits (63), Expect = 5e-027
Identities = 132/155 (85%)
Strand = Plus / Plus
Query: 496 aatgaatttttctgtgaggttgatgatgactacatacaagatgatttcaacctctgtggg 555
||||||||||||||||| |||||||| || ||||| || |||||||| || || |||||
Sbjct: 44 aatgaatttttctgtgaagttgatgacgagtacattcaggatgattttaatctttgtgga 103
Query: 556 ctaagcaaccaagttccatattatgactatgcacttgatctgatattagatgttgaatct 615
| |||| ||||||||||| ||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 104 ttgagcagtcaagttccatactatgattatgcacttgatcttatattggatgttgaatct 163
Query: 616 tcccatggtgatatgttgacagaagagcaaaatga 650
|| || ||||||||||| || ||||| || |||||
Sbjct: 164 tctcacggtgatatgttcactgaagaacagaatga 198
>gb|AJ777153.1|AJ777153 AJ777153 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400023H02F1, mRNA sequence
Length = 636
Score = 121 bits (61), Expect = 7e-026
Identities = 178/217 (82%)
Strand = Plus / Plus
Query: 406 gaatcagaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcg 465
||||| ||||| ||||| ||||| || ||||||||||| || || || || || || ||
Sbjct: 15 gaatctgaaacggacagtgaagagtccgatgtgagtgggtcagaaggagatgagacgacg 74
Query: 466 tggatttcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgac 525
||||| ||||||||||||| ||| || |||||||| || ||||| || ||||||||
Sbjct: 75 tggatctcatggttctgtaatctaagaggaaatgaattcttttgtgaagtggatgatgat 134
Query: 526 tacatacaagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactat 585
||| |||||||||| || |||||||||||| |||||| |||||||| ||||||||||||
Sbjct: 135 tacgtacaagatgactttaacctctgtgggttaagcactcaagttccttattatgactat 194
Query: 586 gcacttgatctgatattagatgttgaatcttcccatg 622
|| |||||| |||| || ||||| || ||||| ||||
Sbjct: 195 gctcttgatttgattttggatgtcgagtcttctcatg 231
Score = 44.1 bits (22), Expect = 0.013
Identities = 139/178 (78%)
Strand = Plus / Plus
Query: 656 ttgaatcagctgctgagatgctctatggattgattcatgttcggtatattattacaagta 715
||||||| || || |||||||| |||||| ||||||||| ||| || || | || || |
Sbjct: 250 ttgaatctgcagcagagatgctttatggactgattcatgctcgatacatattgaccagca 309
Query: 716 aagggctgtccgcaatgctggataagtacaggaacgttgagttcggcagatgccctcgag 775
| ||| || | || |||||||| ||||||| |||| ||| || || |||||||| |||
Sbjct: 310 aggggatggcagctatgctggacaagtacaagaactatgactttgggagatgcccaagag 369
Query: 776 tgaattgcagcggccaaccatgccttcctgttgggcaatcggatgttcctcgttcaag 833
| | ||| | || ||||| |||||||||||||| ||||| || ||||||| |||||
Sbjct: 370 ttcactgctgtggacaaccttgccttcctgttggtcaatcagacattcctcggtcaag 427
>gb|CF237076.1|CF237076 PtajxtjxoF4F0412 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 607
Score = 115 bits (58), Expect = 4e-024
Identities = 116/136 (85%)
Strand = Plus / Plus
Query: 496 aatgaatttttctgtgaggttgatgatgactacatacaagatgatttcaacctctgtggg 555
||||||||||||||||| ||||||||||| ||||| || |||||||| || || || ||
Sbjct: 472 aatgaatttttctgtgaagttgatgatgagtacattcaggatgattttaatctttgngga 531
Query: 556 ctaagcaaccaagttccatattatgactatgcacttgatctgatattagatgttgaatct 615
|| |||| ||||||||||| ||||| ||||| |||||||| ||||| ||||||||||||
Sbjct: 532 ctgagcagtcaagttccatactatgattatgctcttgatcttatattggatgttgaatct 591
Query: 616 tcccatggtgatatgt 631
| ||||| |||||||
Sbjct: 592 nctcatggggatatgt 607
>gb|AI162104.1|AI162104 A012P24U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 608
Score = 113 bits (57), Expect = 2e-023
Identities = 162/197 (82%)
Strand = Plus / Plus
Query: 418 gacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatgg 477
||||||||||| || ||||| |||||||| ||||| || || || || ||||| ||||||
Sbjct: 249 gacagcgaagagtctgatgttagtggttccgatggagatgagacgtcatggatctcatgg 308
Query: 478 ttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagat 537
|| || | ||| || |||||||| || ||||| ||||||||||| ||| ||||||||
Sbjct: 309 ttttgcaatctaagagggaatgaattcttttgtgaagttgatgatgattacctacaagat 368
Query: 538 gatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctg 597
||||| |||||||||||| |||||| ||||||||||| || || ||||| |||||| ||
Sbjct: 369 gattttaacctctgtgggttaagcagtcaagttccatactacgattatgcccttgatttg 428
Query: 598 atattagatgttgaatc 614
|| || ||| |||||||
Sbjct: 429 attttggatattgaatc 445
Score = 42.1 bits (21), Expect = 0.053
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 670 gagatgctctatggattgattcatg 694
|||||||| ||||||||||||||||
Sbjct: 487 gagatgctttatggattgattcatg 511
>gb|CV283287.1|CV283287 WS0186.B21_O21 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0186_O21 3', mRNA sequence
Length = 868
Score = 113 bits (57), Expect = 2e-023
Identities = 114/133 (85%)
Strand = Plus / Minus
Query: 518 atgatgactacatacaagatgatttcaacctctgtgggctaagcaaccaagttccatatt 577
||||||| ||||| || |||||||| || || ||||| || |||| ||||||||||| |
Sbjct: 868 atgatgagtacattcaggatgattttaatctttgtggactgagcagtcaagttccatact 809
Query: 578 atgactatgcacttgatctgatattagatgttgaatcttcccatggtgatatgttgacag 637
|||| |||||||||||||| ||||| |||||||||||||| |||||||||||||| || |
Sbjct: 808 atgattatgcacttgatcttatattggatgttgaatcttctcatggtgatatgttcactg 749
Query: 638 aagagcaaaatga 650
|||| || |||||
Sbjct: 748 aagaacagaatga 736
>gb|DN500080.1|DN500080 UB14CPE07.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB14CPE07 5', mRNA sequence
Length = 772
Score = 101 bits (51), Expect = 7e-020
Identities = 108/127 (85%)
Strand = Plus / Plus
Query: 496 aatgaatttttctgtgaggttgatgatgactacatacaagatgatttcaacctctgtggg 555
|||||||| || ||||| || |||||||| |||||||||||||| || |||||||| |||
Sbjct: 20 aatgaattcttttgtgaagtggatgatgattacatacaagatgactttaacctctgcggg 79
Query: 556 ctaagcaaccaagttccatattatgactatgcacttgatctgatattagatgttgaatct 615
|||||| |||||||| |||||||||||||| |||||| |||| || ||||| || |||
Sbjct: 80 ttaagcactcaagttccttattatgactatgctcttgatttgattttggatgtcgagtct 139
Query: 616 tcccatg 622
|| ||||
Sbjct: 140 tctcatg 146
Score = 44.1 bits (22), Expect = 0.013
Identities = 139/178 (78%)
Strand = Plus / Plus
Query: 656 ttgaatcagctgctgagatgctctatggattgattcatgttcggtatattattacaagta 715
||||||| || || |||||||| |||||| ||||||||| ||| || || | || || |
Sbjct: 165 ttgaatctgcagcagagatgctttatggactgattcatgctcgatacatattgaccagca 224
Query: 716 aagggctgtccgcaatgctggataagtacaggaacgttgagttcggcagatgccctcgag 775
| ||| || | || |||||||| ||||||| |||| ||| || || |||||||| |||
Sbjct: 225 aggggatggcagctatgctggacaagtacaagaactatgactttgggagatgcccaagag 284
Query: 776 tgaattgcagcggccaaccatgccttcctgttgggcaatcggatgttcctcgttcaag 833
| | ||| | || ||||| |||||||||||||| ||||| || ||||||| |||||
Sbjct: 285 ttcactgctgtggacaaccttgccttcctgttggtcaatcagacattcctcggtcaag 342
>gb|AJ772236.1|AJ772236 AJ772236 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700003C11F1, mRNA sequence
Length = 235
Score = 99.6 bits (50), Expect = 3e-019
Identities = 110/130 (84%)
Strand = Plus / Minus
Query: 565 caagttccatattatgactatgcacttgatctgatattagatgttgaatcttcccatggt 624
|||||||| |||||||||||||| |||||| |||| || ||||| || ||||| ||||||
Sbjct: 226 caagttccttattatgactatgctcttgatttgattttggatgtcgagtcttctcatggt 167
Query: 625 gatatgttgacagaagagcaaaatgaacttattgaatcagctgctgagatgctctatgga 684
|||||||| ||||| || |||||||| | ||||||| || || |||||||| ||||||
Sbjct: 166 gatatgttcacagaggaacaaaatgagttggttgaatctgcagcagagatgctttatgga 107
Query: 685 ttgattcatg 694
|||||||||
Sbjct: 106 ctgattcatg 97
>gb|BU831078.1|BU831078 T016H09 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 505
Score = 83.8 bits (42), Expect = 2e-014
Identities = 228/290 (78%)
Strand = Plus / Plus
Query: 583 tatgcacttgatctgatattagatgttgaatcttcccatggtgatatgttgacagaagag 642
|||||||||||||| ||||| |||||||||||||| |||||||||||||| || |||||
Sbjct: 6 tatgcacttgatcttatattggatgttgaatcttctcatggtgatatgttcactgaagaa 65
Query: 643 caaaatgaacttattgaatcagctgctgagatgctctatggattgattcatgttcggtat 702
|| ||||| | | ||||| || || |||||||| || || | |||||||| || ||
Sbjct: 66 cagaatgagttggtggaatctgcagcagagatgctttacggtcttattcatgtgcgttac 125
Query: 703 attattacaagtaaagggctgtccgcaatgctggataagtacaggaacgttgagttcggc 762
|| |||| || || ||| |||| |||||| |||| ||||||| ||| ||| || ||
Sbjct: 126 atacttactagcaaggggatgtctgcaatgttggagaagtacaaaaactatgactttggg 185
Query: 763 agatgccctcgagtgaattgcagcggccaaccatgccttcctgttgggcaatcggatgtt 822
|||||||| ||||| ||||| | || || || ||| | || ||||| ||||| || ||
Sbjct: 186 agatgcccacgagtttattgctgtggacagccctgcttcccagttggtcaatcagacatt 245
Query: 823 cctcgttcaagtacggtgaagatttactgccctagatgtgaagacatcta 872
|||||||| ||||| || || || ||||| || | |||||||||||||||
Sbjct: 246 cctcgttcgagtactgtcaaaatctactgtccaaaatgtgaagacatcta 295
>gb|BI121646.1|BI121646 F043P37Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 288
Score = 81.8 bits (41), Expect = 6e-014
Identities = 212/269 (78%)
Strand = Plus / Plus
Query: 604 gatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaacttattgaatca 663
|||||||||||||| |||||||||||||| || ||||| || ||||| | | |||||
Sbjct: 3 gatgttgaatcttctcatggtgatatgttcaccgaagaacagaatgagttggtggaatcc 62
Query: 664 gctgctgagatgctctatggattgattcatgttcggtatattattacaagtaaagggctg 723
|| || ||||||||||| || | |||||||| || || || |||| || || ||| ||
Sbjct: 63 gcagcagagatgctctacggtcttattcatgtgcgttacatacttactagcaaggggatg 122
Query: 724 tccgcaatgctggataagtacaggaacgttgagttcggcagatgccctcgagtgaattgc 783
|| |||||| |||| ||||||| ||| ||| || || |||||||| ||||| |||||
Sbjct: 123 tctgcaatgttggagaagtacaaaaactatgactttgggagatgcccacgagtttattgc 182
Query: 784 agcggccaaccatgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaag 843
| || || || |||||||| ||||| ||||| || |||||||||| ||||| || ||
Sbjct: 183 tgtggacagccctgccttccagttggtcaatcagacattcctcgttctagtactgtcaaa 242
Query: 844 atttactgccctagatgtgaagacatcta 872
|| ||||| || | |||||||||||||||
Sbjct: 243 atctactgtccaaaatgtgaagacatcta 271
>gb|BU817230.1|BU817230 UA14CPE01 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 401
Score = 75.8 bits (38), Expect = 4e-012
Identities = 101/122 (82%)
Strand = Plus / Plus
Query: 418 gacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatgg 477
||||||||||| || ||||| |||||||| ||||| || || || |||||||| ||||||
Sbjct: 280 gacagcgaagagtctgatgttagtggttccgatggagatgagacgtcgtggatctcatgg 339
Query: 478 ttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagat 537
|| || | ||| || |||||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 340 ttttgcaatctaagagggaatgaattcttttgtgaagttgatgatgattacatacaagat 399
Query: 538 ga 539
||
Sbjct: 400 ga 401
>gb|BI120916.1|BI120916 F025P07Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 320
Score = 67.9 bits (34), Expect = 9e-010
Identities = 212/270 (78%), Gaps = 1/270 (0%)
Strand = Plus / Plus
Query: 604 gatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaacttattgaatca 663
|||||||||||||| |||||||||||||| || ||||| || ||||| | | |||||
Sbjct: 3 gatgttgaatcttctcatggtgatatgttcaccgaagaacagaatgagttggtggaatcc 62
Query: 664 gctgctgagatgctctatggattgattcatgttcggtatattattacaagtaaagggctg 723
|| || ||||||||||| || | |||||||| || || || |||| || || ||| ||
Sbjct: 63 gcagcagagatgctctacggtcttattcatgtgcgttacatacttactagcaaggggatg 122
Query: 724 tccgcaatgctggataagtacaggaacgttgagttcggcagatgccc-tcgagtgaattg 782
|| |||||| |||| ||||||| ||| ||| || || |||||||| ||||| ||||
Sbjct: 123 tctgcaatgttggagaagtacaaaaactatgactttgggagatgcccaccgagtttattg 182
Query: 783 cagcggccaaccatgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaa 842
| | || || || |||||||| ||||| ||||| || |||||||||| ||||| || ||
Sbjct: 183 ctgtggacagccctgccttccagttggtcaatcagacattcctcgttctagtactgtcaa 242
Query: 843 gatttactgccctagatgtgaagacatcta 872
|| ||||| || | |||||||||||||||
Sbjct: 243 aatctactgtccaaaatgtgaagacatcta 272
>gb|CK090790.1|CK090790 F025P07.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F025P07 3', mRNA sequence
Length = 746
Score = 65.9 bits (33), Expect = 4e-009
Identities = 210/269 (78%)
Strand = Plus / Minus
Query: 604 gatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaacttattgaatca 663
|||||||||||| |||||||||||||| || ||||| || ||||| | | |||||
Sbjct: 744 gatgttgaatctcttcatggtgatatgttcaccgaagaacagaatgagttggtggaatcc 685
Query: 664 gctgctgagatgctctatggattgattcatgttcggtatattattacaagtaaagggctg 723
|| || ||||||||||| || | |||||||| || || || |||| || || ||| ||
Sbjct: 684 gcagcagagatgctctacggtcttattcatgtgcgttacatacttactagcaaggggatg 625
Query: 724 tccgcaatgctggataagtacaggaacgttgagttcggcagatgccctcgagtgaattgc 783
|| |||||| |||| ||||||| ||| ||| || || |||||||| ||||| |||||
Sbjct: 624 tctgcaatgttggagaagtacaaaaactatgactttgggagatgcccacgagtttattgc 565
Query: 784 agcggccaaccatgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaag 843
| || || || |||||||| ||||| ||||| || |||||||||| ||||| || ||
Sbjct: 564 tgtggacagccctgccttccagttggtcaatcagacattcctcgttctagtactgtcaaa 505
Query: 844 atttactgccctagatgtgaagacatcta 872
|| ||||| || | |||||||||||||||
Sbjct: 504 atctactgtccaaaatgtgaagacatcta 476
>gb|BU871450.1|BU871450 Q030G04 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 674
Score = 52.0 bits (26), Expect = 6e-005
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 406 gaatcagaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcg 465
||||| ||||| ||||| || || || ||||| |||||||||||||| || ||||| ||
Sbjct: 583 gaatctgaaacagacagtgaggagtctgatgttagtggttctgatggagatgatacatct 642
Query: 466 tggatttcatggtt 479
||||| ||||||||
Sbjct: 643 tggatctcatggtt 656
>gb|CK113033.1|CK113033 UR100TH09 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone UR100TH09 5', mRNA sequence
Length = 464
Score = 52.0 bits (26), Expect = 6e-005
Identities = 107/134 (79%)
Strand = Plus / Plus
Query: 406 gaatcagaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcg 465
||||| ||||| ||||| ||||| || ||||||||||| || || || || || || ||
Sbjct: 284 gaatctgaaacggacagtgaagagtccgatgtgagtgggtcagaaggagatgagacgacg 343
Query: 466 tggatttcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgac 525
||||| ||||||||||||| |||| || |||||||| | ||||| || ||||||||
Sbjct: 344 tggatctcatggttctgtaatctaaaaggaaatgaattcctttgtgaagtggatgatgat 403
Query: 526 tacatacaagatga 539
||||||| |||||
Sbjct: 404 cacatacacgatga 417
>gb|CV282917.1|CV282917 WS0185.B21_P04 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0185_P04 3', mRNA sequence
Length = 721
Score = 52.0 bits (26), Expect = 6e-005
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 565 caagttccatattatgactatgcacttgatctgatattagatgttgaatcttcccatg 622
|||||||| |||||||||||||| |||||| |||| || ||||| || ||||| ||||
Sbjct: 708 caagttccttattatgactatgctcttgatttgattttggatgtcgagtcttctcatg 651
Score = 44.1 bits (22), Expect = 0.013
Identities = 139/178 (78%)
Strand = Plus / Minus
Query: 656 ttgaatcagctgctgagatgctctatggattgattcatgttcggtatattattacaagta 715
||||||| || || |||||||| |||||| ||||||||| ||| || || | || || |
Sbjct: 632 ttgaatctgcagcagagatgctttatggactgattcatgctcgatacatattgaccagca 573
Query: 716 aagggctgtccgcaatgctggataagtacaggaacgttgagttcggcagatgccctcgag 775
| ||| || | || |||||||| ||||||| |||| ||| || || |||||||| |||
Sbjct: 572 aggggatggcagctatgctggacaagtacaagaactatgactttgggagatgcccaagag 513
Query: 776 tgaattgcagcggccaaccatgccttcctgttgggcaatcggatgttcctcgttcaag 833
| | ||| | || ||||| |||||||||||||| ||||| || ||||||| |||||
Sbjct: 512 ttcactgctgtggacaaccttgccttcctgttggtcaatcagacattcctcggtcaag 455
>gb|BU832704.1|BU832704 T037C08 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 682
Score = 50.1 bits (25), Expect = 2e-004
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 433 gatgtgagtggttctgatggggaagatacttcgtggatttcatggttctgtagcttaaag 492
||||| |||||||||||||| || ||||| || ||||| |||||||| || | ||
Sbjct: 586 gatgttagtggttctgatggagatgatacatcttggatctcatggttttgcaatttgcgt 645
Query: 493 ggcaatgaatttttctgtgaggttgatga 521
|| ||||||||||||||||| ||||||||
Sbjct: 646 ggaaatgaatttttctgtgaagttgatga 674
>gb|CV233095.1|CV233095 WS0199.B21_J21 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0199_J21 3', mRNA sequence
Length = 581
Score = 50.1 bits (25), Expect = 2e-004
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 796 tgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaagatttactgccct 855
|||||||| ||||| ||||| || |||||||||| ||||| || || || ||||| ||
Sbjct: 561 tgccttccagttggtcaatcagacattcctcgttctagtactgtcaaaatctactgtcca 502
Query: 856 agatgtgaagacatcta 872
| |||||||||||||||
Sbjct: 501 aaatgtgaagacatcta 485
>gb|BU820791.1|BU820791 UB14CPE07 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 100
Score = 48.1 bits (24), Expect = 9e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 508 tgtgaggttgatgatgactacatacaagatgatttcaacctctg 551
||||| || |||||||| |||||||||||||| || ||||||||
Sbjct: 32 tgtgaagtggatgatgattacatacaagatgactttaacctctg 75
>gb|CV231383.1|CV231383 WS0194.B21_G03 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0194_G03 3', mRNA sequence
Length = 591
Score = 48.1 bits (24), Expect = 9e-004
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 821 ttcctcgttcaagtacggtgaagatttactgccctagatgtgaagacatcta 872
|||||||||||||||| || || || ||||| || | |||||||||||||||
Sbjct: 475 ttcctcgttcaagtactgtcaaaatctactgtccaaaatgtgaagacatcta 424
>gb|CV232622.1|CV232622 WS0198.B21_C22 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0198_C22 3', mRNA sequence
Length = 588
Score = 48.1 bits (24), Expect = 9e-004
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 821 ttcctcgttcaagtacggtgaagatttactgccctagatgtgaagacatcta 872
|||||||||||||||| || || || ||||| || | |||||||||||||||
Sbjct: 500 ttcctcgttcaagtactgtcaaaatctactgtccaaaatgtgaagacatcta 449
>gb|BU898310.1|BU898310 X078F06 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 609
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 433 gatgtgagtggttctgatggggaagatacttcgtggatttcatggtt 479
||||| |||||||||||||| || ||||| || ||||| ||||||||
Sbjct: 545 gatgttagtggttctgatggagatgatacatcttggatctcatggtt 591
>gb|BI138468.1|BI138468 F107P19Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 428
Score = 40.1 bits (20), Expect = 0.21
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 821 ttcctcgttcaagtacggtgaagatttactgccctagatgtgaagacatcta 872
||||||| |||||||| || || || ||||| || | |||||||||||||||
Sbjct: 22 ttcctcgatcaagtactgtcaaaatctactgtccaaaatgtgaagacatcta 73
>gb|CX184999.1|CX184999 F11_45-67_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 604
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1156 tgctctggcctgaaattctg 1175
||||||||||||||||||||
Sbjct: 494 tgctctggcctgaaattctg 513
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 136,781
Number of Sequences: 369679
Number of extensions: 136781
Number of successful extensions: 33722
Number of sequences better than 0.5: 41
Number of HSP's better than 0.5 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33621
Number of HSP's gapped (non-prelim): 82
length of query: 1311
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1292
effective length of database: 196,384,763
effective search space: 253729113796
effective search space used: 253729113796
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)