BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521459.2.1
(892 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV274873.1|CV274873 WS0174.B21.1_K13 PTxD-NR-A-8 Populus... 64 1e-008
gb|DT520673.1|DT520673 WS02448.B21_D13 PTxD-ICC-N-A-14 Popu... 64 1e-008
gb|CN523137.1|CN523137 GQ015M01.B3_L24 GQ015 Populus tricho... 62 4e-008
gb|CX170277.1|CX170277 G05_69-3_13.ab1 leaf inoculated with... 62 4e-008
gb|CX173013.1|CX173013 G02_69-27_14.ab1 leaf inoculated wit... 62 4e-008
gb|CN549936.1|CN549936 GQ0243.B3_L22 GQ024 Populus trichoca... 48 6e-004
gb|CV257819.1|CV257819 WS0247.B21_L22 PTxD-ICC-N-A-14 Popul... 48 6e-004
gb|CN520070.1|CN520070 GQ0107.B3_A09 GQ010 Populus trichoca... 46 0.002
>gb|CV274873.1|CV274873 WS0174.B21.1_K13 PTxD-NR-A-8 Populus trichocarpa x Populus
deltoides cDNA clone WS0174_K13 3', mRNA sequence
Length = 885
Score = 63.9 bits (32), Expect = 1e-008
Identities = 235/300 (78%), Gaps = 2/300 (0%)
Strand = Plus / Minus
Query: 419 gaaactgaaaagctccatgcacaggttgggagatacaagagcccagatgagcaccctttc 478
|||||||||||||| ||||| ||| |||| |||||||||||||| ||||| || |||||
Sbjct: 882 gaaactgaaaagctacatgctcagcttggcagatacaagagccctgatgaacatcctttt 823
Query: 479 ttttccaaggatctgcctgagccccggttgccacctatgcaatacccaagggttttgcat 538
|| | | || | |||||||| ||||||||| |||| |||||| ||| | |||
Sbjct: 822 ttccctgatgacttacctgagccggtgttgccacccttgcagtacccacaggtactacat 763
Query: 539 cccattgctgattctatcaatatcaacaa-agagatttggaaaatgtattttgatgaact 597
|||||||||||||| || ||||| || || | || | ||| | ||||||||| |||||
Sbjct: 762 cccattgctgattcaataaatataaataagacag-tatgggacatgtattttagagaact 704
Query: 598 tcttccaagattggtgaaagaaggaagtgatggtaatgctggatccagtgctctttgtga 657
| |||| |||||||| ||||||||| |||||| ||| |||||| | ||| |||||||
Sbjct: 703 tattcctagattggtcaaagaaggagatgatggcaattgtggatcaacagctgtttgtga 644
Query: 658 cacaacctgcttgcaggcactctccagaaggatccactatgggaagtttgtggcagaggc 717
||||| ||| | ||||| ||||| | ||| ||||| ||||| | ||||| ||||||||
Sbjct: 643 cacaatctgtctacaggctctctcaaaaagaatccattatggagaatttgtagcagaggc 584
>gb|DT520673.1|DT520673 WS02448.B21_D13 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02448_D13 3', mRNA sequence
Length = 897
Score = 63.9 bits (32), Expect = 1e-008
Identities = 235/300 (78%), Gaps = 2/300 (0%)
Strand = Plus / Minus
Query: 419 gaaactgaaaagctccatgcacaggttgggagatacaagagcccagatgagcaccctttc 478
|||||||||||||| ||||| ||| |||| |||||||||||||| ||||| || |||||
Sbjct: 801 gaaactgaaaagctacatgctcagcttggcagatacaagagccctgatgaacatcctttt 742
Query: 479 ttttccaaggatctgcctgagccccggttgccacctatgcaatacccaagggttttgcat 538
|| | | || | |||||||| ||||||||| |||| |||||| ||| | |||
Sbjct: 741 ttcccggatgacttacctgagccagtgttgccacccttgcagtacccacaggtactacat 682
Query: 539 cccattgctgattctatcaatatcaacaa-agagatttggaaaatgtattttgatgaact 597
|||||||||||||| || ||||| || || | || | ||| | ||||||||| |||||
Sbjct: 681 cccattgctgattcaataaatataaataagacag-tatgggacatgtattttagagaact 623
Query: 598 tcttccaagattggtgaaagaaggaagtgatggtaatgctggatccagtgctctttgtga 657
| |||| |||||||| ||||||||| |||||| ||| |||||| | ||| |||||||
Sbjct: 622 tattcctagattggtcaaagaaggagatgatggcaattgtggatcaacagctgtttgtga 563
Query: 658 cacaacctgcttgcaggcactctccagaaggatccactatgggaagtttgtggcagaggc 717
||||| ||| | ||||| ||||| | ||| ||||| ||||| | ||||| ||||||||
Sbjct: 562 cacaatctgtctacaggctctctcaaaaagaatccattatggagaatttgtagcagaggc 503
>gb|CN523137.1|CN523137 GQ015M01.B3_L24 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M01_L24 5', mRNA sequence
Length = 785
Score = 61.9 bits (31), Expect = 4e-008
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 419 gaaactgaaaagctccatgcacaggttgggagatacaagagcccagatgagcacccttt 477
|||||||||||||| ||||| ||| |||| |||||||||||||| ||||| || |||||
Sbjct: 88 gaaactgaaaagctacatgctcagcttggcagatacaagagccctgatgaacatccttt 146
Score = 50.1 bits (25), Expect = 1e-004
Identities = 100/125 (80%)
Strand = Plus / Plus
Query: 593 gaacttcttccaagattggtgaaagaaggaagtgatggtaatgctggatccagtgctctt 652
|||||| |||| |||||||| ||||||||| |||||| ||| |||||| | ||| ||
Sbjct: 262 gaacttattcctagattggtcaaagaaggagatgatggcaattgtggatcaacagctgtt 321
Query: 653 tgtgacacaacctgcttgcaggcactctccagaaggatccactatgggaagtttgtggca 712
|||||||||| ||| | ||||| ||||| | ||| ||||| ||||| | ||||| |||
Sbjct: 322 tgtgacacaatctgtctacaggctctctcaaaaagaatccattatggagaatttgtagca 381
Query: 713 gaggc 717
|||||
Sbjct: 382 gaggc 386
>gb|CX170277.1|CX170277 G05_69-3_13.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 558
Score = 61.9 bits (31), Expect = 4e-008
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 419 gaaactgaaaagctccatgcacaggttgggagatacaagagcccagatgagcacccttt 477
|||||||||||||| ||||| ||| |||| |||||||||||||| ||||| || |||||
Sbjct: 480 gaaactgaaaagctacatgctcagcttggcagatacaagagccctgatgaacatccttt 538
>gb|CX173013.1|CX173013 G02_69-27_14.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 577
Score = 61.9 bits (31), Expect = 4e-008
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 419 gaaactgaaaagctccatgcacaggttgggagatacaagagcccagatgagcacccttt 477
|||||||||||||| ||||| ||| |||| |||||||||||||| ||||| || |||||
Sbjct: 447 gaaactgaaaagctacatgctcagcttggcagatacaagagccctgatgaacatccttt 505
>gb|CN549936.1|CN549936 GQ0243.B3_L22 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0243_L22 5', mRNA sequence
Length = 668
Score = 48.1 bits (24), Expect = 6e-004
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 524 ccaagggttttgcatcccattgctgattctatcaatatcaacaaagagatttggaaaatg 583
|||| |||||||||||| |||||| || || |||||||||||| || | ||||| |||
Sbjct: 351 ccaaaggttttgcatccttgtgctgactcaattaatatcaacaaaaaggtatggaatatg 410
Query: 584 tattttgatgaacttcttccaagattgg 611
|||||| || |||||||||| |||||
Sbjct: 411 tattttacggatcttcttccaaaattgg 438
>gb|CV257819.1|CV257819 WS0247.B21_L22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0247_L22 3', mRNA sequence
Length = 752
Score = 48.1 bits (24), Expect = 6e-004
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 664 ctgcttgcaggcactctccagaaggatccactatgggaagtttgtggc 711
|||||| ||||| ||||| ||||| ||||| || ||||||||||||||
Sbjct: 510 ctgcttacaggccctctctagaagaatccattacgggaagtttgtggc 463
>gb|CN520070.1|CN520070 GQ0107.B3_A09 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0107_A09 5', mRNA sequence
Length = 698
Score = 46.1 bits (23), Expect = 0.002
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 529 ggttttgcatcccattgctgattctatcaatatcaacaaagagatttggaaaatgtattt 588
|||||||||||| |||||| || || |||||||||||| || | ||||| ||||||||
Sbjct: 115 ggttttgcatccttgtgctgactcaattaatatcaacaaaaaggtatggaatatgtattt 174
Query: 589 tgatgaacttcttccaagattgg 611
| || |||||||||| |||||
Sbjct: 175 tacggatcttcttccaaaattgg 197
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 115,250
Number of Sequences: 369679
Number of extensions: 115250
Number of successful extensions: 32024
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32008
Number of HSP's gapped (non-prelim): 16
length of query: 892
length of database: 203,408,664
effective HSP length: 19
effective length of query: 873
effective length of database: 196,384,763
effective search space: 171443898099
effective search space used: 171443898099
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)