BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493976.2.1
(1294 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU820758.1|BU820758 UB14CPA09 Populus tremula cambium cD... 66 4e-009
gb|BU890451.1|BU890451 P037A11 Populus petioles cDNA librar... 66 4e-009
gb|BU893810.1|BU893810 P083A04 Populus petioles cDNA librar... 66 4e-009
gb|BU893884.1|BU893884 P084A04 Populus petioles cDNA librar... 66 4e-009
gb|BI068323.1|BI068323 C020P28U Populus strain T89 leaves P... 64 1e-008
gb|BI070667.1|BI070667 C041P74U Populus strain T89 leaves P... 64 1e-008
gb|CA925535.1|CA925535 MTU7TL.P2.G08 Aspen leaf cDNA Librar... 64 1e-008
gb|CA931041.1|CA931041 MTU2TA.P1.C01 Aspen apex cDNA Librar... 64 1e-008
gb|CA931089.1|CA931089 MTU2TA.P1.H04 Aspen apex cDNA Librar... 64 1e-008
gb|CA932095.1|CA932095 MTU4TA.P26.G11 Aspen apex cDNA Libra... 64 1e-008
gb|CA934619.1|CA934619 MTU5TS.P21.D05 Aspen stem cDNA Libra... 64 1e-008
gb|CF119349.1|CF119349 MTU10CS.P16.G01 Aspen stem cDNA Libr... 64 1e-008
gb|CF119894.1|CF119894 MTU10CS.P7.F07 Aspen stem cDNA Libra... 64 1e-008
gb|AY435100.1| Populus tremula x Populus tremuloides alpha-... 64 1e-008
gb|CK088219.1|CK088219 A044P14.3pR Hybrid aspen plasmid lib... 62 6e-008
gb|BU824007.1|BU824007 UB59CPB10 Populus tremula cambium cD... 58 9e-007
gb|BU882082.1|BU882082 UM72TD05 Populus flower cDNA library... 58 9e-007
gb|CA933376.1|CA933376 MTU5CS.P7.B09 Aspen stem cDNA Librar... 58 9e-007
gb|CK107490.1|CK107490 UB59CPB10.5pR Populus active cambium... 58 9e-007
gb|BP922206.1|BP922206 BP922206 full-length enriched poplar... 58 9e-007
gb|BP922598.1|BP922598 BP922598 full-length enriched poplar... 58 9e-007
gb|CA930772.1|CA930772 MTU2TA.P10.A06 Aspen apex cDNA Libra... 56 3e-006
gb|CA934741.1|CA934741 MTU5TS.P23.B05 Aspen stem cDNA Libra... 56 3e-006
gb|BU827896.1|BU827896 K011P11P Populus apical shoot cDNA l... 52 5e-005
gb|CA931232.1|CA931232 MTU2TA.P4.D07 Aspen apex cDNA Librar... 50 2e-004
gb|AJ775049.1|AJ775049 AJ775049 Populus euphratica shoot 3-... 48 8e-004
gb|BU815416.1|BU815416 N041D08 Populus bark cDNA library Po... 46 0.003
gb|BU867573.1|BU867573 M101G12 Populus flower cDNA library ... 46 0.003
gb|BU868621.1|BU868621 M118B09 Populus flower cDNA library ... 46 0.003
gb|CB240458.1|CB240458 PopSC00443 Poplar SC cDNA library Po... 46 0.003
gb|CF119781.1|CF119781 MTU10CS.P6.C03 Aspen stem cDNA Libra... 46 0.003
gb|CK109527.1|CK109527 N017H10 Populus bark cDNA library Po... 46 0.003
gb|CN519990.1|CN519990 GQ0108.B3_K15 GQ010 Populus trichoca... 46 0.003
gb|CN520597.1|CN520597 GQ0105.B3_E19 GQ010 Populus trichoca... 46 0.003
gb|CN523732.1|CN523732 GQ015M10.T3_E03 GQ015 Populus tricho... 46 0.003
gb|CV240405.1|CV240405 WS0251.B21_E17 PT-MB-N-A-15 Populus ... 46 0.003
gb|CV272399.1|CV272399 WS0157.B21_I20 PTxN-IB-A-6 Populus t... 46 0.003
gb|CX180849.1|CX180849 D06_45-117_08.ab1 leaf inoculated wi... 46 0.003
gb|CX658121.1|CX658121 PO01009F10 Poplar SC cDNA library Po... 46 0.003
gb|DT490247.1|DT490247 WS02544.B21_H02 PT-MB-N-A-15 Populus... 46 0.003
gb|DT492462.1|DT492462 WS02550.C21_M18 PT-MB-N-A-15 Populus... 46 0.003
gb|DT507035.1|DT507035 WS02417.BR_C22 PTxD-ICC-N-A-14 Popul... 46 0.003
gb|BI072028.1|BI072028 C068P05U Populus strain T89 leaves P... 44 0.013
gb|BU815417.1|BU815417 N041D09 Populus bark cDNA library Po... 44 0.013
gb|CA932314.1|CA932314 MTU5CS.P11.D03 Aspen stem cDNA Libra... 44 0.013
gb|CA932791.1|CA932791 MTU5CS.P17.D11 Aspen stem cDNA Libra... 44 0.013
gb|CA932826.1|CA932826 MTU5CS.P18.A02 Aspen stem cDNA Libra... 44 0.013
gb|CF119515.1|CF119515 MTU10CS.P2.H02 Aspen stem cDNA Libra... 44 0.013
gb|CN520784.1|CN520784 GQ0108.B3_L20 GQ010 Populus trichoca... 44 0.013
gb|CN523530.1|CN523530 GQ015M11.T3_D06 GQ015 Populus tricho... 44 0.013
gb|CV130528.1|CV130528 B9SP03c05 Populus stem seasonal libr... 44 0.013
gb|DT477598.1|DT477598 WS02520.BR_G18 PT-MB-N-A-15 Populus ... 44 0.013
gb|DT480457.1|DT480457 WS02528.BR_P11 PT-MB-N-A-15 Populus ... 44 0.013
gb|DT490390.1|DT490390 WS02544.B21_N10 PT-MB-N-A-15 Populus... 44 0.013
gb|DT520342.1|DT520342 WS02447.B21_E17 PTxD-ICC-N-A-14 Popu... 44 0.013
gb|DV463768.1|DV463768 MTUNUL1.P2.B10 NUL Populus fremontii... 44 0.013
gb|AI161578.1|AI161578 A002P74U Hybrid aspen plasmid librar... 42 0.052
gb|AI165287.1|AI165287 A080P42U Hybrid aspen plasmid librar... 42 0.052
gb|BI127499.1|BI127499 G061P54Y Populus cambium cDNA librar... 42 0.052
gb|BI130398.1|BI130398 G105P12Y Populus cambium cDNA librar... 42 0.052
gb|BI131229.1|BI131229 G117P34Y Populus cambium cDNA librar... 42 0.052
gb|BU836300.1|BU836300 T085A03 Populus apical shoot cDNA li... 42 0.052
gb|CA923726.1|CA923726 MTU7CL.P14.B11 Aspen leaf cDNA Libra... 42 0.052
gb|CA930506.1|CA930506 MTU4CA.P23.D05 Aspen apex cDNA Libra... 42 0.052
gb|CA933853.1|CA933853 MTU3TS.P13.E07 Aspen stem cDNA Libra... 42 0.052
gb|CA826407.1|CA826407 R77F11 two-month-old roots from clon... 42 0.052
gb|CK089266.1|CK089266 B007P05.3pR Hybrid aspen plasmid lib... 42 0.052
gb|CK103443.1|CK103443 G117P34.5pR Populus tension wood cDN... 42 0.052
gb|CN523977.1|CN523977 GQ015M07.T3_G12 GQ015 Populus tricho... 42 0.052
gb|CV130860.1|CV130860 X9SP06f07 Populus stem seasonal libr... 42 0.052
gb|CV259380.1|CV259380 WS02011.B21_D08 PTxN-IB-N-A-11 Popul... 42 0.052
gb|CV265899.1|CV265899 WS02028.B21_I23 PTxN-IB-N-A-11 Popul... 42 0.052
gb|CV272777.1|CV272777 WS0158.B21_K22 PTxN-IB-A-6 Populus t... 42 0.052
gb|DT493606.1|DT493606 WS0111.BR_N24 PT-P-FL-A-2 Populus tr... 42 0.052
gb|DT498875.1|DT498875 WS0116.BR_J18 PT-P-FL-A-2 Populus tr... 42 0.052
gb|DT498988.1|DT498988 WS0116.BR_O20 PT-P-FL-A-2 Populus tr... 42 0.052
gb|DT500134.1|DT500134 PX0011.BR_F03 PT-X-FL-A-1 Populus tr... 42 0.052
gb|DT500250.1|DT500250 PX0011.BR_L17 PT-X-FL-A-1 Populus tr... 42 0.052
gb|DT500322.1|DT500322 PX0015.BR_B14 PT-X-FL-A-1 Populus tr... 42 0.052
gb|DT500905.1|DT500905 PX0019.BR_M05 PT-X-FL-A-1 Populus tr... 42 0.052
gb|DT521517.1|DT521517 WS02034.B21_I03 PTxN-IB-N-A-11 Popul... 42 0.052
gb|DT526688.1|DT526688 WS02048.C21_L07 PTxN-IB-N-A-11 Popul... 42 0.052
gb|AY435099.1| Populus tremula x Populus tremuloides alpha-... 42 0.052
gb|CA930838.1|CA930838 MTU2TA.P10.H12 Aspen apex cDNA Libra... 40 0.21
>gb|BU820758.1|BU820758 UB14CPA09 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 381
Score = 65.9 bits (33), Expect = 4e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 206 accttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaac 265
||||||||||| ||||| ||||| |||||||| ||||| ||||| || || ||||| |||
Sbjct: 137 accttctacgggggcggtgatgcttccggcacaatgggtggggcttgcggttacgggaac 196
Query: 266 ctctacagccaggggta 282
| ||||||||||||||
Sbjct: 197 ttgtacagccaggggta 213
>gb|BU890451.1|BU890451 P037A11 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 139
Score = 65.9 bits (33), Expect = 4e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 206 accttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaac 265
||||||||||| ||||| ||||| ||||||| ||||||||||| || || ||||| |||
Sbjct: 13 accttctacggaggcggtgatgctcccggcacaatgggcggggcttgcggttacgggaac 72
Query: 266 ctctacagccaggggta 282
| ||||||||||||||
Sbjct: 73 ttgtacagccaggggta 89
>gb|BU893810.1|BU893810 P083A04 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 557
Score = 65.9 bits (33), Expect = 4e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 206 accttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaac 265
||||||||||| ||||| ||||| |||||||| ||||| ||||| || || ||||| |||
Sbjct: 44 accttctacgggggcggtgatgcttccggcacaatgggtggggcttgcggttacgggaac 103
Query: 266 ctctacagccaggggta 282
| ||||||||||||||
Sbjct: 104 ttgtacagccaggggta 120
Score = 46.1 bits (23), Expect = 0.003
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 587 ggcatacgtttcaccatcaacggccactcctacttcaacctggtactggtgaccaacgt 645
|||||| | ||||| |||||||| |||||||||||||| || || ||| | ||||||||
Sbjct: 416 ggcataagattcacaatcaacggtcactcctacttcaatctagtcctgataaccaacgt 474
>gb|BU893884.1|BU893884 P084A04 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 656
Score = 65.9 bits (33), Expect = 4e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 206 accttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaac 265
||||||||||| ||||| ||||| |||||||| ||||| ||||| || || ||||| |||
Sbjct: 44 accttctacgggggcggtgatgcttccggcacaatgggtggggcttgcggttacgggaac 103
Query: 266 ctctacagccaggggta 282
| ||||||||||||||
Sbjct: 104 ttgtacagccaggggta 120
Score = 46.1 bits (23), Expect = 0.003
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 587 ggcatacgtttcaccatcaacggccactcctacttcaacctggtactggtgaccaacgt 645
|||||| | ||||| |||||||| |||||||||||||| || || ||| | ||||||||
Sbjct: 416 ggcataagattcacaatcaacggtcactcctacttcaatctagtcctgataaccaacgt 474
>gb|BI068323.1|BI068323 C020P28U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 392
Score = 63.9 bits (32), Expect = 1e-008
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 599 accatcaacggccactcctacttcaacctggt 630
||||||||||||||||||||||||||||||||
Sbjct: 5 accatcaacggccactcctacttcaacctggt 36
Score = 52.0 bits (26), Expect = 5e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 698 gggtggcaggccctgtcgcgcaactggggccagaactggcagagcaacac 747
|||||||| ||| |||| | ||||||||||| |||||||||||||||||
Sbjct: 101 gggtggcaagccatgtcaagaaactggggccaaaactggcagagcaacac 150
>gb|BI070667.1|BI070667 C041P74U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 384
Score = 63.9 bits (32), Expect = 1e-008
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 599 accatcaacggccactcctacttcaacctggt 630
||||||||||||||||||||||||||||||||
Sbjct: 6 accatcaacggccactcctacttcaacctggt 37
Score = 52.0 bits (26), Expect = 5e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 698 gggtggcaggccctgtcgcgcaactggggccagaactggcagagcaacac 747
|||||||| ||| |||| | ||||||||||| |||||||||||||||||
Sbjct: 102 gggtggcaagccatgtcaagaaactggggccaaaactggcagagcaacac 151
>gb|CA925535.1|CA925535 MTU7TL.P2.G08 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 546
Score = 63.9 bits (32), Expect = 1e-008
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 599 accatcaacggccactcctacttcaacctggt 630
||||||||||||||||||||||||||||||||
Sbjct: 492 accatcaacggccactcctacttcaacctggt 461
Score = 52.0 bits (26), Expect = 5e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 698 gggtggcaggccctgtcgcgcaactggggccagaactggcagagcaacac 747
|||||||| ||| |||| | ||||||||||| |||||||||||||||||
Sbjct: 396 gggtggcaagccatgtcaagaaactggggccaaaactggcagagcaacac 347
>gb|CA931041.1|CA931041 MTU2TA.P1.C01 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 560
Score = 63.9 bits (32), Expect = 1e-008
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 599 accatcaacggccactcctacttcaacctggt 630
||||||||||||||||||||||||||||||||
Sbjct: 495 accatcaacggccactcctacttcaacctggt 464
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 719 aactggggccagaactggcagagcaacac 747
||||||||||| |||||||||||||||||
Sbjct: 379 aactggggccaaaactggcagagcaacac 351
>gb|CA931089.1|CA931089 MTU2TA.P1.H04 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 555
Score = 63.9 bits (32), Expect = 1e-008
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 599 accatcaacggccactcctacttcaacctggt 630
||||||||||||||||||||||||||||||||
Sbjct: 492 accatcaacggccactcctacttcaacctggt 461
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 719 aactggggccagaactggcagagcaac 745
||||||||||| |||||||||||||||
Sbjct: 376 aactggggccaaaactggcagagcaac 350
>gb|CA932095.1|CA932095 MTU4TA.P26.G11 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 506
Score = 63.9 bits (32), Expect = 1e-008
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 599 accatcaacggccactcctacttcaacctggt 630
||||||||||||||||||||||||||||||||
Sbjct: 66 accatcaacggccactcctacttcaacctggt 97
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 719 aactggggccagaactggcagagcaacac 747
||||||||||| |||||||||||||||||
Sbjct: 182 aactggggccaaaactggcagagcaacac 210
>gb|CA934619.1|CA934619 MTU5TS.P21.D05 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 496
Score = 63.9 bits (32), Expect = 1e-008
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 599 accatcaacggccactcctacttcaacctggt 630
||||||||||||||||||||||||||||||||
Sbjct: 66 accatcaacggccactcctacttcaacctggt 97
Score = 52.0 bits (26), Expect = 5e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 698 gggtggcaggccctgtcgcgcaactggggccagaactggcagagcaacac 747
|||||||| ||| |||| | ||||||||||| |||||||||||||||||
Sbjct: 162 gggtggcaagccatgtcaagaaactggggccaaaactggcagagcaacac 211
>gb|CF119349.1|CF119349 MTU10CS.P16.G01 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 782
Score = 63.9 bits (32), Expect = 1e-008
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 599 accatcaacggccactcctacttcaacctggt 630
||||||||||||||||||||||||||||||||
Sbjct: 196 accatcaacggccactcctacttcaacctggt 227
Score = 52.0 bits (26), Expect = 5e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 698 gggtggcaggccctgtcgcgcaactggggccagaactggcagagcaacac 747
|||||||| ||| |||| | ||||||||||| |||||||||||||||||
Sbjct: 292 gggtggcaagccatgtcaagaaactggggccaaaactggcagagcaacac 341
>gb|CF119894.1|CF119894 MTU10CS.P7.F07 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 617
Score = 63.9 bits (32), Expect = 1e-008
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 599 accatcaacggccactcctacttcaacctggt 630
||||||||||||||||||||||||||||||||
Sbjct: 196 accatcaacggccactcctacttcaacctggt 227
Score = 52.0 bits (26), Expect = 5e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 698 gggtggcaggccctgtcgcgcaactggggccagaactggcagagcaacac 747
|||||||| ||| |||| | ||||||||||| |||||||||||||||||
Sbjct: 292 gggtggcaagccatgtcaagaaactggggccaaaactggcagagcaacac 341
>gb|AY435100.1| Populus tremula x Populus tremuloides alpha-expansin 2 (Exp2) mRNA,
complete cds
Length = 1084
Score = 63.9 bits (32), Expect = 1e-008
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 599 accatcaacggccactcctacttcaacctggt 630
||||||||||||||||||||||||||||||||
Sbjct: 542 accatcaacggccactcctacttcaacctggt 573
Score = 52.0 bits (26), Expect = 5e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 698 gggtggcaggccctgtcgcgcaactggggccagaactggcagagcaacac 747
|||||||| ||| |||| | ||||||||||| |||||||||||||||||
Sbjct: 638 gggtggcaagccatgtcaagaaactggggccaaaactggcagagcaacac 687
>gb|CK088219.1|CK088219 A044P14.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A044P14 3', mRNA sequence
Length = 731
Score = 61.9 bits (31), Expect = 6e-008
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 600 ccatcaacggccactcctacttcaacctggt 630
|||||||||||||||||||||||||||||||
Sbjct: 561 ccatcaacggccactcctacttcaacctggt 531
Score = 52.0 bits (26), Expect = 5e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 698 gggtggcaggccctgtcgcgcaactggggccagaactggcagagcaacac 747
|||||||| ||| |||| | ||||||||||| |||||||||||||||||
Sbjct: 466 gggtggcaagccatgtcaagaaactggggccaaaactggcagagcaacac 417
>gb|BU824007.1|BU824007 UB59CPB10 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 611
Score = 58.0 bits (29), Expect = 9e-007
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 206 accttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaac 265
||||||||||| || || ||||| |||||||| ||||| ||||| || || ||||| |||
Sbjct: 153 accttctacggaggtggtgatgcttccggcacaatgggtggggcttgcggttacgggaac 212
Query: 266 ctctacagccaggggta 282
| ||||||||||||||
Sbjct: 213 ttgtacagccaggggta 229
Score = 46.1 bits (23), Expect = 0.003
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 587 ggcatacgtttcaccatcaacggccactcctacttcaacctggtactggtgaccaacgt 645
|||||| | ||||| |||||||| |||||||||||||| || || ||| | ||||||||
Sbjct: 525 ggcataagattcacaatcaacggtcactcctacttcaatctagtcctgattaccaacgt 583
>gb|BU882082.1|BU882082 UM72TD05 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 410
Score = 58.0 bits (29), Expect = 9e-007
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 206 accttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaac 265
||||||||||| || || ||||| |||||||| ||||| ||||| || || ||||| |||
Sbjct: 151 accttctacggaggtggtgatgcttccggcacaatgggtggggcttgcggttacgggaac 210
Query: 266 ctctacagccaggggta 282
| ||||||||||||||
Sbjct: 211 ttgtacagccaggggta 227
>gb|CA933376.1|CA933376 MTU5CS.P7.B09 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 605
Score = 58.0 bits (29), Expect = 9e-007
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 599 accatcaacggccactcctacttcaacctggt 630
||||||||||||||||||||||||||| ||||
Sbjct: 570 accatcaacggccactcctacttcaacntggt 539
Score = 52.0 bits (26), Expect = 5e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 698 gggtggcaggccctgtcgcgcaactggggccagaactggcagagcaacac 747
|||||||| ||| |||| | ||||||||||| |||||||||||||||||
Sbjct: 474 gggtggcaagccatgtcaagaaactggggccaaaactggcagagcaacac 425
>gb|CK107490.1|CK107490 UB59CPB10.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB59CPB10 5', mRNA sequence
Length = 545
Score = 58.0 bits (29), Expect = 9e-007
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 206 accttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaac 265
||||||||||| || || ||||| |||||||| ||||| ||||| || || ||||| |||
Sbjct: 137 accttctacggaggtggtgatgcttccggcacaatgggtggggcttgcggttacgggaac 196
Query: 266 ctctacagccaggggta 282
| ||||||||||||||
Sbjct: 197 ttgtacagccaggggta 213
>gb|BP922206.1|BP922206 BP922206 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-005_A19.f 5', mRNA sequence
Length = 453
Score = 58.0 bits (29), Expect = 9e-007
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 206 accttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaac 265
||||||||||| || || ||||| |||||||| ||||| ||||| || || ||||| |||
Sbjct: 146 accttctacggaggtggtgatgcttccggcacaatgggtggggcttgcggttacgggaac 205
Query: 266 ctctacagccaggggta 282
| ||||||||||||||
Sbjct: 206 ttgtacagccaggggta 222
>gb|BP922598.1|BP922598 BP922598 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-009_I01.f 5', mRNA sequence
Length = 333
Score = 58.0 bits (29), Expect = 9e-007
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 206 accttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaac 265
||||||||||| || || ||||| |||||||| ||||| ||||| || || ||||| |||
Sbjct: 157 accttctacggaggtggtgatgcttccggcacaatgggtggggcttgcggttacgggaac 216
Query: 266 ctctacagccaggggta 282
| ||||||||||||||
Sbjct: 217 ttgtacagccaggggta 233
>gb|CA930772.1|CA930772 MTU2TA.P10.A06 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 516
Score = 56.0 bits (28), Expect = 3e-006
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 603 tcaacggccactcctacttcaacctggt 630
||||||||||||||||||||||||||||
Sbjct: 70 tcaacggccactcctacttcaacctggt 97
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 719 aactggggccagaactggcagagcaacac 747
||||||||||| |||||||||||||||||
Sbjct: 182 aactggggccaaaactggcagagcaacac 210
>gb|CA934741.1|CA934741 MTU5TS.P23.B05 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 546
Score = 56.0 bits (28), Expect = 3e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 599 accatcaacggccactcctacttcaacctggt 630
|||||||||| |||||||||||||||||||||
Sbjct: 495 accatcaacgaccactcctacttcaacctggt 464
Score = 52.0 bits (26), Expect = 5e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 698 gggtggcaggccctgtcgcgcaactggggccagaactggcagagcaacac 747
|||||||| ||| |||| | ||||||||||| |||||||||||||||||
Sbjct: 399 gggtggcaagccatgtcaagaaactggggccaaaactggcagagcaacac 350
>gb|BU827896.1|BU827896 K011P11P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 571
Score = 52.0 bits (26), Expect = 5e-005
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 206 accttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaac 265
||||||||||| || || ||||| |||||||| ||||| ||||| || || ||||| |||
Sbjct: 109 accttctacggaggtggtgatgcttccggcacaatgggtggggcttgcggttacgggaac 168
Query: 266 ctctacagccaggg 279
| |||||||||||
Sbjct: 169 ttgtacagccaggg 182
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 587 ggcatacgtttcaccatcaacggccactcctacttcaacctggtactggtgaccaacgtg 646
|||||| | ||||| |||||||| |||||||||||||| || || ||| | |||||||||
Sbjct: 478 ggcataagattcacaatcaacggtcactcctacttcaatctagtcctgataaccaacgtg 537
Query: 647 g 647
|
Sbjct: 538 g 538
>gb|CA931232.1|CA931232 MTU2TA.P4.D07 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 471
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 719 aactggggccagaactggcagagcaacac 747
||||||||||| |||||||||||||||||
Sbjct: 374 aactggggccaaaactggcagagcaacac 346
>gb|AJ775049.1|AJ775049 AJ775049 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300027C03F1, mRNA sequence
Length = 578
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 599 accatcaacggccactcctacttcaacctggt 630
||||||||||| ||||||||||||||| ||||
Sbjct: 534 accatcaacggtcactcctacttcaacttggt 565
>gb|BU815416.1|BU815416 N041D08 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 620
Score = 46.1 bits (23), Expect = 0.003
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 587 ggcatacgtttcaccatcaacggccactcctacttcaacctggtactggtgaccaacgt 645
|||||| | ||||| |||||||| |||||||||||||| || || ||| | ||||||||
Sbjct: 120 ggcataagattcacaatcaacggtcactcctacttcaatctagtcctgataaccaacgt 178
>gb|BU867573.1|BU867573 M101G12 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 673
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 617 tacttcaacctggtactggtgaccaacgtgg 647
|||||||||||||| |||||||||||||||
Sbjct: 542 tacttcaacctggttttggtgaccaacgtgg 572
>gb|BU868621.1|BU868621 M118B09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 746
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 617 tacttcaacctggtactggtgaccaacgtgg 647
|||||||||||||| |||||||||||||||
Sbjct: 224 tacttcaacctggttttggtgaccaacgtgg 254
>gb|CB240458.1|CB240458 PopSC00443 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PopSC00443, mRNA sequence
Length = 476
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 698 gggtggcaggccctgtcgcgcaactggggccagaactggcagagcaa 744
|||||||| || ||||| | |||||||||||||||||||| |||||
Sbjct: 77 gggtggcaagctatgtcgaggaactggggccagaactggcaaagcaa 123
>gb|CF119781.1|CF119781 MTU10CS.P6.C03 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 612
Score = 46.1 bits (23), Expect = 0.003
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 587 ggcatacgtttcaccatcaacggccactcctacttcaacctggtactggtgaccaacgt 645
|||||| | ||||| |||||||| |||||||||||||| || || ||| | ||||||||
Sbjct: 290 ggcataagattcacaatcaacggtcactcctacttcaatctagtcctgataaccaacgt 348
>gb|CK109527.1|CK109527 N017H10 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N017H10 5', mRNA sequence
Length = 423
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 617 tacttcaacctggtactggtgaccaacgtgg 647
|||||||||||||| |||||||||||||||
Sbjct: 137 tacttcaacctggttttggtgaccaacgtgg 167
>gb|CN519990.1|CN519990 GQ0108.B3_K15 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_K15 5', mRNA sequence
Length = 777
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 617 tacttcaacctggtactggtgaccaacgtgg 647
|||||||||||||| |||||||||||||||
Sbjct: 622 tacttcaacctggttttggtgaccaacgtgg 592
>gb|CN520597.1|CN520597 GQ0105.B3_E19 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0105_E19 5', mRNA sequence
Length = 670
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 617 tacttcaacctggtactggtgaccaacgtgg 647
|||||||||||||| |||||||||||||||
Sbjct: 540 tacttcaacctggttttggtgaccaacgtgg 570
>gb|CN523732.1|CN523732 GQ015M10.T3_E03 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M10_E03 5', mRNA sequence
Length = 737
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 617 tacttcaacctggtactggtgaccaacgtgg 647
|||||||||||||| |||||||||||||||
Sbjct: 273 tacttcaacctggttttggtgaccaacgtgg 303
>gb|CV240405.1|CV240405 WS0251.B21_E17 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0251_E17 3', mRNA sequence
Length = 885
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 617 tacttcaacctggtactggtgaccaacgtgg 647
|||||||||||||| |||||||||||||||
Sbjct: 654 tacttcaacctggttttggtgaccaacgtgg 624
>gb|CV272399.1|CV272399 WS0157.B21_I20 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0157_I20 3', mRNA sequence
Length = 683
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 617 tacttcaacctggtactggtgaccaacgtgg 647
|||||||||||||| |||||||||||||||
Sbjct: 655 tacttcaacctggttttggtgaccaacgtgg 625
>gb|CX180849.1|CX180849 D06_45-117_08.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 695
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 617 tacttcaacctggtactggtgaccaacgtgg 647
|||||||||||||| |||||||||||||||
Sbjct: 578 tacttcaacctggttttggtgaccaacgtgg 608
>gb|CX658121.1|CX658121 PO01009F10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01009F10 5', mRNA sequence
Length = 677
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 698 gggtggcaggccctgtcgcgcaactggggccagaactggcagagcaa 744
|||||||| || ||||| | |||||||||||||||||||| |||||
Sbjct: 345 gggtggcaagctatgtcgaggaactggggccagaactggcaaagcaa 391
>gb|DT490247.1|DT490247 WS02544.B21_H02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02544_H02 3', mRNA sequence
Length = 743
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 617 tacttcaacctggtactggtgaccaacgtgg 647
|||||||||||||| |||||||||||||||
Sbjct: 55 tacttcaacctggttttggtgaccaacgtgg 85
>gb|DT492462.1|DT492462 WS02550.C21_M18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02550_M18 3', mRNA sequence
Length = 718
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 617 tacttcaacctggtactggtgaccaacgtgg 647
|||||||||||||| |||||||||||||||
Sbjct: 644 tacttcaacctggttttggtgaccaacgtgg 614
>gb|DT507035.1|DT507035 WS02417.BR_C22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_C22 5', mRNA sequence
Length = 494
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 617 tacttcaacctggtactggtgaccaacgtgg 647
|||||||||||||| |||||||||||||||
Sbjct: 42 tacttcaacctggttttggtgaccaacgtgg 72
>gb|BI072028.1|BI072028 C068P05U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 437
Score = 44.1 bits (22), Expect = 0.013
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 587 ggcatacgtttcaccatcaacggccactcctacttcaa 624
||||| || |||| ||||||||||||||| ||||||||
Sbjct: 41 ggcattcggttcaacatcaacggccactcatacttcaa 78
>gb|BU815417.1|BU815417 N041D09 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 566
Score = 44.1 bits (22), Expect = 0.013
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 587 ggcatacgtttcaccatcaacggccactcctacttcaa 624
|||||| | ||||| |||||||| ||||||||||||||
Sbjct: 515 ggcataagattcacaatcaacggtcactcctacttcaa 552
Score = 42.1 bits (21), Expect = 0.052
Identities = 63/77 (81%)
Strand = Plus / Plus
Query: 206 accttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaac 265
||||||||||| || || ||||| |||||||| ||| | ||||| || || ||| | |||
Sbjct: 143 accttctacggaggtggtgatgcttccggcacaatgtgtggggcttgcggttactgtaac 202
Query: 266 ctctacagccaggggta 282
| ||||||||||||||
Sbjct: 203 ttgtacagccaggggta 219
>gb|CA932314.1|CA932314 MTU5CS.P11.D03 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 559
Score = 44.1 bits (22), Expect = 0.013
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 587 ggcatacgtttcaccatcaacggccactcctacttcaa 624
||||| || |||| ||||||||||||||| ||||||||
Sbjct: 283 ggcattcggttcaacatcaacggccactcatacttcaa 320
>gb|CA932791.1|CA932791 MTU5CS.P17.D11 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 559
Score = 44.1 bits (22), Expect = 0.013
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 587 ggcatacgtttcaccatcaacggccactcctacttcaa 624
||||| || |||| ||||||||||||||| ||||||||
Sbjct: 277 ggcattcggttcaacatcaacggccactcatacttcaa 240
>gb|CA932826.1|CA932826 MTU5CS.P18.A02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 690
Score = 44.1 bits (22), Expect = 0.013
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 587 ggcatacgtttcaccatcaacggccactcctacttcaa 624
|||||| | ||||| |||||||| ||||||||||||||
Sbjct: 484 ggcataaggttcacaatcaacggtcactcctacttcaa 521
>gb|CF119515.1|CF119515 MTU10CS.P2.H02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 225
Score = 44.1 bits (22), Expect = 0.013
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 587 ggcatacgtttcaccatcaacggccactcctacttcaa 624
|||||| | ||||| |||||||| ||||||||||||||
Sbjct: 17 ggcataaggttcacaatcaacggtcactcctacttcaa 54
>gb|CN520784.1|CN520784 GQ0108.B3_L20 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_L20 5', mRNA sequence
Length = 821
Score = 44.1 bits (22), Expect = 0.013
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 587 ggcatacgtttcaccatcaacggccactcctacttcaa 624
||||| || ||||||||||| |||||||| ||||||||
Sbjct: 430 ggcattcggttcaccatcaatggccactcatacttcaa 467
Score = 42.1 bits (21), Expect = 0.052
Identities = 90/113 (79%)
Strand = Plus / Plus
Query: 197 gctcacgccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtggg 256
||||| ||||| ||||| || || |||||||| || || || ||||| ||||| |||||
Sbjct: 73 gctcatgccactttctatggaggtggcgatgcttcagggacaatgggtggggcttgtggc 132
Query: 257 tacggcaacctctacagccaggggtacggcaccaacacggcggcgctgagcac 309
|| || || || ||||||||||| || || || ||||| || || ||||||||
Sbjct: 133 tatggaaatctgtacagccagggttatggaactaacaccgcagcactgagcac 185
>gb|CN523530.1|CN523530 GQ015M11.T3_D06 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M11_D06 5', mRNA sequence
Length = 779
Score = 44.1 bits (22), Expect = 0.013
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 587 ggcatacgtttcaccatcaacggccactcctacttcaa 624
||||| || ||||||||||| |||||||| ||||||||
Sbjct: 425 ggcattcggttcaccatcaatggccactcatacttcaa 462
Score = 42.1 bits (21), Expect = 0.052
Identities = 90/113 (79%)
Strand = Plus / Plus
Query: 197 gctcacgccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtggg 256
||||| ||||| ||||| || || |||||||| || || || ||||| ||||| |||||
Sbjct: 68 gctcatgccactttctatggaggtggcgatgcttcagggacaatgggtggggcttgtggc 127
Query: 257 tacggcaacctctacagccaggggtacggcaccaacacggcggcgctgagcac 309
|| || || || ||||||||||| || || || ||||| || || ||||||||
Sbjct: 128 tatggaaatctgtacagccagggttatggaactaacacagcagcactgagcac 180
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 82,919
Number of Sequences: 369679
Number of extensions: 82919
Number of successful extensions: 21655
Number of sequences better than 0.5: 84
Number of HSP's better than 0.5 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21466
Number of HSP's gapped (non-prelim): 184
length of query: 1294
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1275
effective length of database: 196,384,763
effective search space: 250390572825
effective search space used: 250390572825
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)