BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2493535.2.1
         (580 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AF309094.1|AF309094  Populus deltoides teosinte-branched-...    42   0.023
gb|AJ778556.1|AJ778556  AJ778556 Populus euphratica cambium ...    38   0.36 
gb|DT499340.1|DT499340  WS0118.BR_A11 PT-P-FL-A-2 Populus tr...    38   0.36 

>gb|AF309094.1|AF309094 Populus deltoides teosinte-branched-like protein (TB1) gene,
           complete cds
          Length = 1735

 Score = 42.1 bits (21), Expect = 0.023
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 436 acagcagcagcagcatgacgaggaggacg 464
           |||||||||||||||| | ||||||||||
Sbjct: 262 acagcagcagcagcatcaggaggaggacg 290



>gb|AJ778556.1|AJ778556 AJ778556 Populus euphratica cambium 3-6 months Populus euphratica
           cDNA clone P0000600002F03F1, mRNA sequence
          Length = 645

 Score = 38.2 bits (19), Expect = 0.36
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 272 gcagaagcagcggcggcgg 290
           |||||||||||||||||||
Sbjct: 119 gcagaagcagcggcggcgg 137



>gb|DT499340.1|DT499340 WS0118.BR_A11 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0118_A11
           5', mRNA sequence
          Length = 594

 Score = 38.2 bits (19), Expect = 0.36
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 521 acgggcgacgctgcgacag 539
           |||||||||||||||||||
Sbjct: 527 acgggcgacgctgcgacag 545



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 64,047
Number of Sequences: 369679
Number of extensions: 64047
Number of successful extensions: 23763
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23759
Number of HSP's gapped (non-prelim): 4
length of query: 580
length of database: 203,408,664
effective HSP length: 19
effective length of query: 561
effective length of database: 196,384,763
effective search space: 110171852043
effective search space used: 110171852043
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)