BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493531.2.1
(1061 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV271085.1|CV271085 WS0153.B21_L24 PTxN-IB-A-6 Populus t... 50 2e-004
gb|DT510120.1|DT510120 WS02425.BR_K11 PTxD-ICC-N-A-14 Popul... 46 0.003
gb|CK115098.1|CK115098 Y003E09 Populus infected leaf substr... 44 0.011
gb|CX179242.1|CX179242 F10_45-39_12.ab1 leaf inoculated wit... 44 0.011
gb|DT508835.1|DT508835 WS02422.BR_B02 PTxD-ICC-N-A-14 Popul... 44 0.011
gb|DT522651.1|DT522651 WS02037.B21_J05 PTxN-IB-N-A-11 Popul... 44 0.011
gb|BI070136.1|BI070136 C014P56U Populus strain T89 leaves P... 42 0.043
gb|BI123250.1|BI123250 I019P67P Populus leaf cDNA library P... 42 0.043
gb|CF230648.1|CF230648 PtaC0011C12C1206 Poplar cDNA library... 42 0.043
gb|CK104218.1|CK104218 I019P67.5pR Populus senescing leaves... 42 0.043
gb|CK112524.1|CK112524 S034B09 Populus imbibed seed cDNA li... 42 0.043
gb|CN520046.1|CN520046 GQ0105.B3_H19 GQ010 Populus trichoca... 42 0.043
gb|CX178265.1|CX178265 C11_45-90_05.ab1 leaf inoculated wit... 42 0.043
gb|CX181217.1|CX181217 G08_45-109_14.ab1 leaf inoculated wi... 42 0.043
gb|CX181641.1|CX181641 H03_45-99_15.ab1 leaf inoculated wit... 42 0.043
gb|CX181695.1|CX181695 F11_45-51_11.ab1 leaf inoculated wit... 42 0.043
gb|CX181786.1|CX181786 F12_45-50_12.ab1 leaf inoculated wit... 42 0.043
gb|CX182044.1|CX182044 G06_45-45_14.ab1 leaf inoculated wit... 42 0.043
gb|CX182660.1|CX182660 B10_45-123_04.ab1 leaf inoculated wi... 42 0.043
gb|CX182797.1|CX182797 D08_45-123_08.ab1 leaf inoculated wi... 42 0.043
gb|CX184393.1|CX184393 A06_45-8_02.ab1 leaf inoculated with... 42 0.043
gb|CX185656.1|CX185656 A02_45-74_02.ab1 leaf inoculated wit... 42 0.043
gb|CX186607.1|CX186607 B10_45-85_04.ab1 leaf inoculated wit... 42 0.043
gb|CX187438.1|CX187438 B03_45-121_03.ab1 leaf inoculated wi... 42 0.043
gb|CX282667.1|CX282667 18-2.6.7 Populus tremula X Populus a... 42 0.043
gb|DN498514.1|DN498514 S034B09.5pR Populus imbibed seed cDN... 42 0.043
gb|CV240688.1|CV240688 WS02510.B21_B03 PT-MB-N-A-15 Populus... 40 0.17
gb|CV245398.1|CV245398 WS0257.B21_E22 PT-MB-N-A-15 Populus ... 40 0.17
gb|CX172377.1|CX172377 E04_69-63_10.ab1 leaf inoculated wit... 40 0.17
gb|DT479009.1|DT479009 WS02524.BR_H18 PT-MB-N-A-15 Populus ... 40 0.17
gb|DV465494.1|DV465494 MTUNUL1.P4.D01 NUL Populus fremontii... 40 0.17
>gb|CV271085.1|CV271085 WS0153.B21_L24 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0153_L24 3', mRNA sequence
Length = 457
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 118 ctcttcttcctcctcctccccctcctcac 146
|||||| ||||||||||||||||||||||
Sbjct: 454 ctcttcctcctcctcctccccctcctcac 426
>gb|DT510120.1|DT510120 WS02425.BR_K11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02425_K11 5', mRNA sequence
Length = 769
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 112 ctcctgctcttcttcctcctcctccccctcctcac 146
||||| ||| || ||||||||||||||||||||||
Sbjct: 532 ctcctcctcctcctcctcctcctccccctcctcac 566
>gb|CK115098.1|CK115098 Y003E09 Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y003E09 5', mRNA sequence
Length = 589
Score = 44.1 bits (22), Expect = 0.011
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 115 ctgctcttcttcctcctcctccccctcctc 144
||||||||| |||||||||||| |||||||
Sbjct: 242 ctgctcttcctcctcctcctcctcctcctc 271
>gb|CX179242.1|CX179242 F10_45-39_12.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 603
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctccccctcctc 144
|||||||||||||||||| |||||||
Sbjct: 292 tcttcttcctcctcctcctcctcctc 267
>gb|DT508835.1|DT508835 WS02422.BR_B02 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_B02 5', mRNA sequence
Length = 919
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctc 144
|||||||||||||||||| |||||||
Sbjct: 107 tcttcttcctcctcctcctcctcctc 132
>gb|DT522651.1|DT522651 WS02037.B21_J05 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02037_J05 3', mRNA sequence
Length = 461
Score = 44.1 bits (22), Expect = 0.011
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 125 tcctcctcctccccctcctcac 146
||||||||||||||||||||||
Sbjct: 458 tcctcctcctccccctcctcac 437
>gb|BI070136.1|BI070136 C014P56U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 353
Score = 42.1 bits (21), Expect = 0.043
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 118 ctcttcttcctcctcctccccctcc 142
||||||||||||||||||| |||||
Sbjct: 158 ctcttcttcctcctcctcctcctcc 134
>gb|BI123250.1|BI123250 I019P67P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 400
Score = 42.1 bits (21), Expect = 0.043
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 112 ctcctgctcttcttcctcctcctccccctcctc 144
||||| |||||| |||||||||||| |||||||
Sbjct: 132 ctcctcctcttcctcctcctcctcctcctcctc 100
Score = 40.1 bits (20), Expect = 0.17
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 113 tcctgctcttcttcctcctcctccccctcctc 144
|||| ||| ||||||||||||||| |||||||
Sbjct: 134 tcctcctcctcttcctcctcctcctcctcctc 103
>gb|CF230648.1|CF230648 PtaC0011C12C1206 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 661
Score = 42.1 bits (21), Expect = 0.043
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 120 cttcttcctcctcctccccctcctc 144
||||||||||||||||| |||||||
Sbjct: 274 cttcttcctcctcctcctcctcctc 250
>gb|CK104218.1|CK104218 I019P67.5pR Populus senescing leaves cDNA library Populus tremula
cDNA clone I019P67 5', mRNA sequence
Length = 626
Score = 42.1 bits (21), Expect = 0.043
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 112 ctcctgctcttcttcctcctcctccccctcctc 144
||||| |||||| |||||||||||| |||||||
Sbjct: 171 ctcctcctcttcctcctcctcctcctcctcctc 139
Score = 40.1 bits (20), Expect = 0.17
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 113 tcctgctcttcttcctcctcctccccctcctc 144
|||| ||| ||||||||||||||| |||||||
Sbjct: 173 tcctcctcctcttcctcctcctcctcctcctc 142
>gb|CK112524.1|CK112524 S034B09 Populus imbibed seed cDNA library Populus tremula cDNA
clone S034B09 5', mRNA sequence
Length = 189
Score = 42.1 bits (21), Expect = 0.043
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctccccctcct 143
|||||||||||||||||| ||||||
Sbjct: 65 tcttcttcctcctcctcctcctcct 41
>gb|CN520046.1|CN520046 GQ0105.B3_H19 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0105_H19 5', mRNA sequence
Length = 762
Score = 42.1 bits (21), Expect = 0.043
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 120 cttcttcctcctcctccccctcctc 144
||||||||||||||||| |||||||
Sbjct: 136 cttcttcctcctcctcctcctcctc 112
>gb|CX178265.1|CX178265 C11_45-90_05.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 653
Score = 42.1 bits (21), Expect = 0.043
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 116 tgctcttcttcctcctcctcc 136
|||||||||||||||||||||
Sbjct: 284 tgctcttcttcctcctcctcc 304
>gb|CX181217.1|CX181217 G08_45-109_14.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 463
Score = 42.1 bits (21), Expect = 0.043
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 116 tgctcttcttcctcctcctcc 136
|||||||||||||||||||||
Sbjct: 303 tgctcttcttcctcctcctcc 323
>gb|CX181641.1|CX181641 H03_45-99_15.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 590
Score = 42.1 bits (21), Expect = 0.043
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 116 tgctcttcttcctcctcctcc 136
|||||||||||||||||||||
Sbjct: 263 tgctcttcttcctcctcctcc 283
>gb|CX181695.1|CX181695 F11_45-51_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 665
Score = 42.1 bits (21), Expect = 0.043
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 116 tgctcttcttcctcctcctcc 136
|||||||||||||||||||||
Sbjct: 316 tgctcttcttcctcctcctcc 336
>gb|CX181786.1|CX181786 F12_45-50_12.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 653
Score = 42.1 bits (21), Expect = 0.043
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 116 tgctcttcttcctcctcctcc 136
|||||||||||||||||||||
Sbjct: 310 tgctcttcttcctcctcctcc 330
>gb|CX182044.1|CX182044 G06_45-45_14.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 653
Score = 42.1 bits (21), Expect = 0.043
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 116 tgctcttcttcctcctcctcc 136
|||||||||||||||||||||
Sbjct: 310 tgctcttcttcctcctcctcc 330
>gb|CX182660.1|CX182660 B10_45-123_04.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 698
Score = 42.1 bits (21), Expect = 0.043
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 116 tgctcttcttcctcctcctcc 136
|||||||||||||||||||||
Sbjct: 199 tgctcttcttcctcctcctcc 219
>gb|CX182797.1|CX182797 D08_45-123_08.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 705
Score = 42.1 bits (21), Expect = 0.043
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 116 tgctcttcttcctcctcctcc 136
|||||||||||||||||||||
Sbjct: 334 tgctcttcttcctcctcctcc 354
>gb|CX184393.1|CX184393 A06_45-8_02.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 673
Score = 42.1 bits (21), Expect = 0.043
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 116 tgctcttcttcctcctcctcc 136
|||||||||||||||||||||
Sbjct: 310 tgctcttcttcctcctcctcc 330
>gb|CX185656.1|CX185656 A02_45-74_02.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 645
Score = 42.1 bits (21), Expect = 0.043
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 116 tgctcttcttcctcctcctcc 136
|||||||||||||||||||||
Sbjct: 302 tgctcttcttcctcctcctcc 322
>gb|CX186607.1|CX186607 B10_45-85_04.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 668
Score = 42.1 bits (21), Expect = 0.043
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 116 tgctcttcttcctcctcctcc 136
|||||||||||||||||||||
Sbjct: 300 tgctcttcttcctcctcctcc 320
>gb|CX187438.1|CX187438 B03_45-121_03.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 677
Score = 42.1 bits (21), Expect = 0.043
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 116 tgctcttcttcctcctcctcc 136
|||||||||||||||||||||
Sbjct: 217 tgctcttcttcctcctcctcc 237
>gb|CX282667.1|CX282667 18-2.6.7 Populus tremula X Populus alba developing vegetative bud
cDNA Library Populus alba x Populus tremula cDNA clone
183, mRNA sequence
Length = 106
Score = 42.1 bits (21), Expect = 0.043
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 116 tgctcttcttcctcctcctcc 136
|||||||||||||||||||||
Sbjct: 104 tgctcttcttcctcctcctcc 84
>gb|DN498514.1|DN498514 S034B09.5pR Populus imbibed seed cDNA library Populus tremula cDNA
clone S034B09 5', mRNA sequence
Length = 202
Score = 42.1 bits (21), Expect = 0.043
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctccccctcct 143
|||||||||||||||||| ||||||
Sbjct: 65 tcttcttcctcctcctcctcctcct 41
>gb|CV240688.1|CV240688 WS02510.B21_B03 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02510_B03 3', mRNA sequence
Length = 689
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 125 tcctcctcctccccctcctc 144
||||||||||||||||||||
Sbjct: 307 tcctcctcctccccctcctc 326
>gb|CV245398.1|CV245398 WS0257.B21_E22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0257_E22 3', mRNA sequence
Length = 648
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 125 tcctcctcctccccctcctc 144
||||||||||||||||||||
Sbjct: 308 tcctcctcctccccctcctc 327
>gb|CX172377.1|CX172377 E04_69-63_10.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 672
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 116 tgctcttcttcctcctcctc 135
||||||||||||||||||||
Sbjct: 332 tgctcttcttcctcctcctc 351
>gb|DT479009.1|DT479009 WS02524.BR_H18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02524_H18 5', mRNA sequence
Length = 819
Score = 40.1 bits (20), Expect = 0.17
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 122 tcttcctcctcctccccctcctca 145
||||||||||||||| ||||||||
Sbjct: 144 tcttcctcctcctcctcctcctca 167
>gb|DV465494.1|DV465494 MTUNUL1.P4.D01 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 595
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 118 ctcttcttcctcctcctccc 137
||||||||||||||||||||
Sbjct: 88 ctcttcttcctcctcctccc 107
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 118,634
Number of Sequences: 369679
Number of extensions: 118634
Number of successful extensions: 34348
Number of sequences better than 0.5: 31
Number of HSP's better than 0.5 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34236
Number of HSP's gapped (non-prelim): 82
length of query: 1061
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1042
effective length of database: 196,384,763
effective search space: 204632923046
effective search space used: 204632923046
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)