BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2478337.2.1
         (729 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AI163168.1|AI163168  A034p37u Hybrid aspen plasmid librar...    40   0.12 
gb|CA926111.1|CA926111  MTU6CR.P10.B07 Aspen root cDNA Libra...    40   0.12 
gb|CK088074.1|CK088074  A034P37.3pR Hybrid aspen plasmid lib...    40   0.12 
gb|CK097924.1|CK097924  UB67DPB12.3pR Populus active cambium...    40   0.12 
gb|DN484346.1|DN484346  G128P21.3pR Populus tension wood cDN...    40   0.12 
gb|CK098728.1|CK098728  A027P67.5pR Hybrid aspen plasmid lib...    38   0.45 
gb|DV466321.1|DV466321  MTUNUL1.P5.B03 NUL Populus fremontii...    38   0.45 

>gb|AI163168.1|AI163168 A034p37u Hybrid aspen plasmid library Populus tremula x Populus
           tremuloides cDNA 5', mRNA sequence
          Length = 476

 Score = 40.1 bits (20), Expect = 0.12
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 240 ctccttaaccttcttgtcctcctc 263
           |||||| |||||||||||||||||
Sbjct: 437 ctccttcaccttcttgtcctcctc 414



>gb|CA926111.1|CA926111 MTU6CR.P10.B07 Aspen root cDNA Library Populus tremuloides cDNA,
           mRNA sequence
          Length = 641

 Score = 40.1 bits (20), Expect = 0.12
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 240 ctccttaaccttcttgtcctcctc 263
           |||||| |||||||||||||||||
Sbjct: 579 ctccttcaccttcttgtcctcctc 556



>gb|CK088074.1|CK088074 A034P37.3pR Hybrid aspen plasmid library Populus tremula x Populus
           tremuloides cDNA clone A034P37 3', mRNA sequence
          Length = 528

 Score = 40.1 bits (20), Expect = 0.12
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 240 ctccttaaccttcttgtcctcctc 263
           |||||| |||||||||||||||||
Sbjct: 503 ctccttcaccttcttgtcctcctc 526



>gb|CK097924.1|CK097924 UB67DPB12.3pR Populus active cambium cDNA library Populus tremula
           cDNA clone UB67DPB12 3', mRNA sequence
          Length = 761

 Score = 40.1 bits (20), Expect = 0.12
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 240 ctccttaaccttcttgtcctcctc 263
           |||||| |||||||||||||||||
Sbjct: 449 ctccttcaccttcttgtcctcctc 472



>gb|DN484346.1|DN484346 G128P21.3pR Populus tension wood cDNA library Populus tremula x
           Populus tremuloides cDNA clone G128P21 3', mRNA sequence
          Length = 643

 Score = 40.1 bits (20), Expect = 0.12
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 240 ctccttaaccttcttgtcctcctc 263
           |||||| |||||||||||||||||
Sbjct: 527 ctccttcaccttcttgtcctcctc 550



>gb|CK098728.1|CK098728 A027P67.5pR Hybrid aspen plasmid library Populus tremula x Populus
           tremuloides cDNA clone A027P67 5', mRNA sequence
          Length = 438

 Score = 38.2 bits (19), Expect = 0.45
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 246 aaccttcttgtcctcctcc 264
           |||||||||||||||||||
Sbjct: 230 aaccttcttgtcctcctcc 212



>gb|DV466321.1|DV466321 MTUNUL1.P5.B03 NUL Populus fremontii x Populus angustifolia cDNA,
           mRNA sequence
          Length = 794

 Score = 38.2 bits (19), Expect = 0.45
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 241 tccttaaccttcttgtcctcctc 263
           ||||| |||||||||||||||||
Sbjct: 184 tccttcaccttcttgtcctcctc 162



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 116,322
Number of Sequences: 369679
Number of extensions: 116322
Number of successful extensions: 42058
Number of sequences better than  0.5: 7
Number of HSP's better than  0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42049
Number of HSP's gapped (non-prelim): 9
length of query: 729
length of database: 203,408,664
effective HSP length: 19
effective length of query: 710
effective length of database: 196,384,763
effective search space: 139433181730
effective search space used: 139433181730
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)