BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478290.2.1
(1343 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ779407.1|AJ779407 AJ779407 Populus euphratica root 3-6... 96 4e-018
gb|AJ777428.1|AJ777428 AJ777428 Populus euphratica root 3-6... 92 7e-017
gb|DT505107.1|DT505107 WS01810.C21_A18 PTxD-IL-N-A-9 Populu... 84 2e-014
gb|DT525647.1|DT525647 WS02045.C21_O12 PTxN-IB-N-A-11 Popul... 82 6e-014
gb|DT507408.1|DT507408 WS02418.BR_C22 PTxD-ICC-N-A-14 Popul... 80 2e-013
gb|DT518344.1|DT518344 WS02436.B21_O04 PTxD-ICC-N-A-14 Popu... 80 2e-013
gb|BI127953.1|BI127953 G068P72Y Populus cambium cDNA librar... 76 4e-012
gb|BU893054.1|BU893054 P072F11 Populus petioles cDNA librar... 74 2e-011
gb|DN486904.1|DN486904 P072F11.3pR Populus petioles cDNA li... 74 2e-011
gb|BU877253.1|BU877253 V031H01 Populus flower cDNA library ... 72 6e-011
gb|CV258290.1|CV258290 WS0249.B21_B19 PTxD-ICC-N-A-14 Popul... 72 6e-011
gb|CV262852.1|CV262852 WS0202.B21_K23 PTxN-IB-N-A-11 Populu... 72 6e-011
gb|DN491845.1|DN491845 V031H01.3pR Populus male catkins cDN... 72 6e-011
gb|DT490594.1|DT490594 WS02545.B21_G08 PT-MB-N-A-15 Populus... 72 6e-011
gb|DT509181.1|DT509181 WS02423.BR_A12 PTxD-ICC-N-A-14 Popul... 72 6e-011
gb|DT510651.1|DT510651 WS02427.BR_C21 PTxD-ICC-N-A-14 Popul... 72 6e-011
gb|DT513795.1|DT513795 WS02423.B21_A12 PTxD-ICC-N-A-14 Popu... 72 6e-011
gb|DT515294.1|DT515294 WS02427.B21_C21 PTxD-ICC-N-A-14 Popu... 72 6e-011
gb|CV249287.1|CV249287 WS01123.B21_K04 PT-P-FL-A-2 Populus ... 68 9e-010
gb|CV258460.1|CV258460 WS0249.B21_J17 PTxD-ICC-N-A-14 Popul... 68 9e-010
gb|CV262794.1|CV262794 WS0202.B21_I13 PTxN-IB-N-A-11 Populu... 68 9e-010
gb|CV267694.1|CV267694 WS02032.B21_H03 PTxN-IB-N-A-11 Popul... 68 9e-010
gb|CV281060.1|CV281060 WS0138.B21_N14 PTxD-IL-FL-A-4 Populu... 68 9e-010
gb|DT496515.1|DT496515 WS01123.BR_K04 PT-P-FL-A-2 Populus t... 68 9e-010
gb|DT504059.1|DT504059 WS0138.BR_N14 PTxD-IL-FL-A-4 Populus... 68 9e-010
gb|AJ773034.1|AJ773034 AJ773034 Populus euphratica leaf 3-6... 66 4e-009
gb|DT488603.1|DT488603 WS02536.B21_O08 PT-MB-N-A-15 Populus... 66 4e-009
gb|DT509121.1|DT509121 WS02422.BR_N22 PTxD-ICC-N-A-14 Popul... 66 4e-009
gb|DT513738.1|DT513738 WS02422.B21_N22 PTxD-ICC-N-A-14 Popu... 64 1e-008
gb|DT511005.1|DT511005 WS02429.BR_E20 PTxD-ICC-N-A-14 Popul... 62 6e-008
gb|DT515704.1|DT515704 WS02429.B21.1_E20 PTxD-ICC-N-A-14 Po... 62 6e-008
gb|CV239872.1|CV239872 WS0233.B21_L16 PT-MB-A-13 Populus tr... 58 9e-007
gb|DN496497.1|DN496497 P072F11.5pR Populus petioles cDNA li... 58 9e-007
gb|DT508783.1|DT508783 WS02421.BR_O21 PTxD-ICC-N-A-14 Popul... 54 1e-005
gb|DT513392.1|DT513392 WS02421.B21_O21 PTxD-ICC-N-A-14 Popu... 54 1e-005
gb|DN493585.1|DN493585 F104P15.5pR Populus flower cDNA libr... 52 6e-005
gb|DT524629.1|DT524629 WS02043.C21_C20 PTxN-IB-N-A-11 Popul... 48 9e-004
gb|CX183946.1|CX183946 D09_45-2_07.ab1 leaf inoculated with... 44 0.014
gb|DT475691.1|DT475691 WS0127.BR_O12 PT-GT-FL-A-3 Populus t... 44 0.014
gb|BU827173.1|BU827173 UK129TC12 Populus apical shoot cDNA ... 42 0.054
gb|CV242865.1|CV242865 WS02516.B21.1_E03 PT-MB-N-A-15 Popul... 40 0.21
gb|DN496861.1|DN496861 Q021C01.5pR Populus dormant bud cDNA... 40 0.21
>gb|AJ779407.1|AJ779407 AJ779407 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000800002D05F1, mRNA sequence
Length = 628
Score = 95.6 bits (48), Expect = 4e-018
Identities = 135/164 (82%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
||||||| ||||| ||||||||||| || |||||||| || || || || || |||||||
Sbjct: 321 tgatcattacagattactgcatgccaggaatgacaggctacgatctcctaaaaaagatca 380
Query: 509 aggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaacattcctt 568
|||| || || | ||| |||||||| || |||||||||||||| ||||| | ||||
Sbjct: 381 aggaatccaagtatttcaaggatatcccagttgtgatcatgtcctcggagaatgtccctt 440
Query: 569 caaggatcaataggtgcctggaggaaggagctgacgagttcttc 612
|||| |||||||||||| |||| |||||||| || |||||||||
Sbjct: 441 caagaatcaataggtgcttggaagaaggagcagaagagttcttc 484
Score = 42.1 bits (21), Expect = 0.054
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 100 tgatcatcacagactactgcatgcctggcatgacagg 136
||||||| ||||| ||||||||||| || ||||||||
Sbjct: 321 tgatcattacagattactgcatgccaggaatgacagg 357
>gb|AJ777428.1|AJ777428 AJ777428 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400028B04F1, mRNA sequence
Length = 655
Score = 91.7 bits (46), Expect = 7e-017
Identities = 124/150 (82%)
Strand = Plus / Plus
Query: 428 atcaggatgtggctgtgaacctgatcatcacagactactgcatgcctggcatgacaggat 487
||||||| |||| ||||| || || || ||||| ||||| ||||||||||||||||| |
Sbjct: 416 atcaggaagtggaagtgaatcttattattacagattactgtatgcctggcatgacaggct 475
Query: 488 atgacctgctcaagaagatcaaggagtcgtcgtctctcagagatatcccggtggtgatca 547
|||| ||||||||||| | ||||| || || ||||||||| | || || || |||||||
Sbjct: 476 atgatctgctcaagaaagtaaaggaatcatcatctctcagaaacatacctgtagtgatca 535
Query: 548 tgtcctctgagaacattccttcaaggatca 577
|||| ||||| || |||||||||||||||
Sbjct: 536 tgtcatctgaaaatgttccttcaaggatca 565
Score = 48.1 bits (24), Expect = 9e-004
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 79 atcaggatgtggctgtgaacctgatcatcacagactactgcatgcctggcatgacaggat 138
||||||| |||| ||||| || || || ||||| ||||| ||||||||||||||||| |
Sbjct: 416 atcaggaagtggaagtgaatcttattattacagattactgtatgcctggcatgacaggct 475
Query: 139 atga 142
||||
Sbjct: 476 atga 479
>gb|DT505107.1|DT505107 WS01810.C21_A18 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS01810_A18 3', mRNA sequence
Length = 876
Score = 83.8 bits (42), Expect = 2e-014
Identities = 123/150 (82%)
Strand = Plus / Minus
Query: 428 atcaggatgtggctgtgaacctgatcatcacagactactgcatgcctggcatgacaggat 487
||||||| |||| ||||| || || || ||||| ||||| ||||||||||||||||| |
Sbjct: 639 atcaggaagtggaagtgaatcttattattacagattactgtatgcctggcatgacaggct 580
Query: 488 atgacctgctcaagaagatcaaggagtcgtcgtctctcagagatatcccggtggtgatca 547
|||| |||||||||| | ||||| || || ||||||||| | || || || |||||||
Sbjct: 579 atgatttgctcaagaaagtaaaggaatcatcatctctcagaaacatacctgtagtgatca 520
Query: 548 tgtcctctgagaacattccttcaaggatca 577
|||| ||||| || |||||||||||||||
Sbjct: 519 tgtcatctgaaaatgttccttcaaggatca 490
Score = 48.1 bits (24), Expect = 9e-004
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 79 atcaggatgtggctgtgaacctgatcatcacagactactgcatgcctggcatgacaggat 138
||||||| |||| ||||| || || || ||||| ||||| ||||||||||||||||| |
Sbjct: 639 atcaggaagtggaagtgaatcttattattacagattactgtatgcctggcatgacaggct 580
Query: 139 atga 142
||||
Sbjct: 579 atga 576
>gb|DT525647.1|DT525647 WS02045.C21_O12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02045_O12 3', mRNA sequence
Length = 805
Score = 81.8 bits (41), Expect = 6e-014
Identities = 101/121 (83%)
Strand = Plus / Minus
Query: 457 acagactactgcatgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcg 516
||||| ||||| ||||||||||||||||| ||||| |||||||||| | ||||| ||
Sbjct: 723 acagattactgtatgcctggcatgacaggctatgatttgctcaagaaagtaaaggaatca 664
Query: 517 tcgtctctcagagatatcccggtggtgatcatgtcctctgagaacattccttcaaggatc 576
|| ||||||||| | || || || ||||||||||| ||||| || ||||||||||||||
Sbjct: 663 tcatctctcagaaacatacctgtagtgatcatgtcatctgaaaatgttccttcaaggatc 604
Query: 577 a 577
|
Sbjct: 603 a 603
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 108 acagactactgcatgcctggcatgacaggatatga 142
||||| ||||| ||||||||||||||||| |||||
Sbjct: 723 acagattactgtatgcctggcatgacaggctatga 689
>gb|DT507408.1|DT507408 WS02418.BR_C22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_C22 5', mRNA sequence
Length = 828
Score = 79.8 bits (40), Expect = 2e-013
Identities = 112/136 (82%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
||||| || ||||| ||||| ||||| ||||| ||||||||||| ||||| ||||||||
Sbjct: 349 gtgaatcttatcattacagattactgtatgcccggcatgacaggctatgatttgctcaag 408
Query: 502 aagatcaaggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaac 561
|| | ||||| ||||| |||||||| || || || ||||| |||||||| ||||| ||
Sbjct: 409 aaagtaaaggaatcgtcatctctcagggacatacctgtggtcatcatgtcatctgaaaat 468
Query: 562 attccttcaaggatca 577
| |||||||||||||
Sbjct: 469 gtcccttcaaggatca 484
Score = 44.1 bits (22), Expect = 0.014
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
||||| || ||||| ||||| ||||| ||||| ||||||||||| |||||
Sbjct: 349 gtgaatcttatcattacagattactgtatgcccggcatgacaggctatga 398
>gb|DT518344.1|DT518344 WS02436.B21_O04 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02436_O04 3', mRNA sequence
Length = 831
Score = 79.8 bits (40), Expect = 2e-013
Identities = 112/136 (82%)
Strand = Plus / Minus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
||||| || ||||| ||||| ||||| ||||| ||||||||||| ||||| ||||||||
Sbjct: 641 gtgaatcttatcattacagattactgtatgcccggcatgacaggctatgatttgctcaag 582
Query: 502 aagatcaaggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaac 561
|| | ||||| ||||| |||||||| || || || ||||| |||||||| ||||| ||
Sbjct: 581 aaagtaaaggaatcgtcatctctcagggacatacctgtggtcatcatgtcatctgaaaat 522
Query: 562 attccttcaaggatca 577
| |||||||||||||
Sbjct: 521 gtcccttcaaggatca 506
Score = 44.1 bits (22), Expect = 0.014
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
||||| || ||||| ||||| ||||| ||||| ||||||||||| |||||
Sbjct: 641 gtgaatcttatcattacagattactgtatgcccggcatgacaggctatga 592
>gb|BI127953.1|BI127953 G068P72Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 476
Score = 75.8 bits (38), Expect = 4e-012
Identities = 86/102 (84%)
Strand = Plus / Plus
Query: 460 gactactgcatgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcgtcg 519
||||||||||||||||| |||||||||||||| |||||||||| |||||||| || ||
Sbjct: 353 gactactgcatgcctggaatgacaggatatgagttgctcaagaaaatcaaggaatcatct 412
Query: 520 tctctcagagatatcccggtggtgatcatgtcctctgagaac 561
| ||||||| || ||||| ||||| ||||| || ||||||
Sbjct: 413 agtttcagagaaataccggttgtgattatgtcatcggagaac 454
Score = 56.0 bits (28), Expect = 4e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 111 gactactgcatgcctggcatgacaggatatga 142
||||||||||||||||| ||||||||||||||
Sbjct: 353 gactactgcatgcctggaatgacaggatatga 384
>gb|BU893054.1|BU893054 P072F11 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 656
Score = 73.8 bits (37), Expect = 2e-011
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 460 gactactgcatgcctggcatgacaggatatgacctgctcaagaagatcaagga 512
|||||||| |||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct: 234 gactactgtatgcctggaatgacaggatatgagctgctcaagaaaatcaagga 286
Score = 48.1 bits (24), Expect = 9e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 111 gactactgcatgcctggcatgacaggatatga 142
|||||||| |||||||| ||||||||||||||
Sbjct: 234 gactactgtatgcctggaatgacaggatatga 265
>gb|DN486904.1|DN486904 P072F11.3pR Populus petioles cDNA library Populus tremula cDNA
clone P072F11 3', mRNA sequence
Length = 587
Score = 73.8 bits (37), Expect = 2e-011
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 460 gactactgcatgcctggcatgacaggatatgacctgctcaagaagatcaagga 512
|||||||| |||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct: 509 gactactgtatgcctggaatgacaggatatgagctgctcaagaaaatcaagga 457
Score = 48.1 bits (24), Expect = 9e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 111 gactactgcatgcctggcatgacaggatatga 142
|||||||| |||||||| ||||||||||||||
Sbjct: 509 gactactgtatgcctggaatgacaggatatga 478
>gb|BU877253.1|BU877253 V031H01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 684
Score = 71.9 bits (36), Expect = 6e-011
Identities = 132/164 (80%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
||||||| ||||| ||||| ||||| || |||||||| || || || || || |||||||
Sbjct: 305 tgatcattacagattactgtatgccaggaatgacaggctacgatctcctaaaaaagatca 364
Query: 509 aggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaacattcctt 568
|||| || || | ||| |||||||| || |||||||||||||| ||||| | || |
Sbjct: 365 aggaatccaagtatttcaaggatatcccagttgtgatcatgtcctcagagaatgtcccct 424
Query: 569 caaggatcaataggtgcctggaggaaggagctgacgagttcttc 612
|||| |||||||| ||| |||| |||||||| || |||||||||
Sbjct: 425 caagaatcaatagatgcttggaagaaggagcagaagagttcttc 468
>gb|CV258290.1|CV258290 WS0249.B21_B19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0249_B19 3', mRNA sequence
Length = 702
Score = 71.9 bits (36), Expect = 6e-011
Identities = 132/164 (80%)
Strand = Plus / Minus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
||||||| ||||| ||||| ||||| || |||||||| || || || || || |||||||
Sbjct: 528 tgatcattacagattactgtatgccaggaatgacaggctacgatctcctaaaaaagatca 469
Query: 509 aggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaacattcctt 568
|||| || || | ||| |||||||| || |||||||||||||| ||||| | || |
Sbjct: 468 aggaatccaagtatttcaaggatatcccagttgtgatcatgtcctcagagaatgtcccct 409
Query: 569 caaggatcaataggtgcctggaggaaggagctgacgagttcttc 612
|||| |||||||| ||| |||| |||||||| || |||||||||
Sbjct: 408 caagaatcaatagatgcttggaagaaggagcagaagagttcttc 365
>gb|CV262852.1|CV262852 WS0202.B21_K23 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0202_K23 3', mRNA sequence
Length = 865
Score = 71.9 bits (36), Expect = 6e-011
Identities = 132/164 (80%)
Strand = Plus / Minus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
||||||| ||||| ||||| ||||| || |||||||| || || || || || |||||||
Sbjct: 595 tgatcattacagattactgtatgccaggaatgacaggctacgatctcctaaaaaagatca 536
Query: 509 aggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaacattcctt 568
|||| || || | ||| |||||||| || |||||||||||||| ||||| | || |
Sbjct: 535 aggaatccaagtatttcaaggatatcccagttgtgatcatgtcctcagagaatgtcccct 476
Query: 569 caaggatcaataggtgcctggaggaaggagctgacgagttcttc 612
|||| |||||||| ||| |||| |||||||| || |||||||||
Sbjct: 475 caagaatcaatagatgcttggaagaaggagcagaagagttcttc 432
>gb|DN491845.1|DN491845 V031H01.3pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V031H01 3', mRNA sequence
Length = 858
Score = 71.9 bits (36), Expect = 6e-011
Identities = 132/164 (80%)
Strand = Plus / Minus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
||||||| ||||| ||||| ||||| || |||||||| || || || || || |||||||
Sbjct: 480 tgatcattacagattactgtatgccaggaatgacaggctacgatctcctaaaaaagatca 421
Query: 509 aggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaacattcctt 568
|||| || || | ||| |||||||| || |||||||||||||| ||||| | || |
Sbjct: 420 aggaatccaagtatttcaaggatatcccagttgtgatcatgtcctcagagaatgtcccct 361
Query: 569 caaggatcaataggtgcctggaggaaggagctgacgagttcttc 612
|||| |||||||| ||| |||| |||||||| || |||||||||
Sbjct: 360 caagaatcaatagatgcttggaagaaggagcagaagagttcttc 317
>gb|DT490594.1|DT490594 WS02545.B21_G08 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02545_G08 3', mRNA sequence
Length = 743
Score = 71.9 bits (36), Expect = 6e-011
Identities = 132/164 (80%)
Strand = Plus / Minus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
||||||| ||||| ||||| ||||| || |||||||| || || || || || |||||||
Sbjct: 551 tgatcattacagattactgtatgccaggaatgacaggctacgatctcctaaaaaagatca 492
Query: 509 aggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaacattcctt 568
|||| || || | ||| |||||||| || |||||||||||||| ||||| | || |
Sbjct: 491 aggaatccaagtatttcaaggatatcccagttgtgatcatgtcctcagagaatgtcccct 432
Query: 569 caaggatcaataggtgcctggaggaaggagctgacgagttcttc 612
|||| |||||||| ||| |||| |||||||| || |||||||||
Sbjct: 431 caagaatcaatagatgcttggaagaaggagcagaagagttcttc 388
>gb|DT509181.1|DT509181 WS02423.BR_A12 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02423_A12 5', mRNA sequence
Length = 858
Score = 71.9 bits (36), Expect = 6e-011
Identities = 132/164 (80%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
||||||| ||||| ||||| ||||| || |||||||| || || || || || |||||||
Sbjct: 303 tgatcattacagattactgtatgccaggaatgacaggctacgatctcctaaaaaagatca 362
Query: 509 aggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaacattcctt 568
|||| || || | ||| |||||||| || |||||||||||||| ||||| | || |
Sbjct: 363 aggaatccaagtatttcaaggatatcccagttgtgatcatgtcctcagagaatgtcccct 422
Query: 569 caaggatcaataggtgcctggaggaaggagctgacgagttcttc 612
|||| |||||||| ||| |||| |||||||| || |||||||||
Sbjct: 423 caagaatcaatagatgcttggaagaaggagcagaagagttcttc 466
>gb|DT510651.1|DT510651 WS02427.BR_C21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02427_C21 5', mRNA sequence
Length = 809
Score = 71.9 bits (36), Expect = 6e-011
Identities = 132/164 (80%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
||||||| ||||| ||||| ||||| || |||||||| || || || || || |||||||
Sbjct: 279 tgatcattacagattactgtatgccaggaatgacaggctacgatctcctaaaaaagatca 338
Query: 509 aggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaacattcctt 568
|||| || || | ||| |||||||| || |||||||||||||| ||||| | || |
Sbjct: 339 aggaatccaagtatttcaaggatatcccagttgtgatcatgtcctcagagaatgtcccct 398
Query: 569 caaggatcaataggtgcctggaggaaggagctgacgagttcttc 612
|||| |||||||| ||| |||| |||||||| || |||||||||
Sbjct: 399 caagaatcaatagatgcttggaagaaggagcagaagagttcttc 442
>gb|DT513795.1|DT513795 WS02423.B21_A12 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02423_A12 3', mRNA sequence
Length = 855
Score = 71.9 bits (36), Expect = 6e-011
Identities = 132/164 (80%)
Strand = Plus / Minus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
||||||| ||||| ||||| ||||| || |||||||| || || || || || |||||||
Sbjct: 555 tgatcattacagattactgtatgccaggaatgacaggctacgatctcctaaaaaagatca 496
Query: 509 aggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaacattcctt 568
|||| || || | ||| |||||||| || |||||||||||||| ||||| | || |
Sbjct: 495 aggaatccaagtatttcaaggatatcccagttgtgatcatgtcctcagagaatgtcccct 436
Query: 569 caaggatcaataggtgcctggaggaaggagctgacgagttcttc 612
|||| |||||||| ||| |||| |||||||| || |||||||||
Sbjct: 435 caagaatcaatagatgcttggaagaaggagcagaagagttcttc 392
>gb|DT515294.1|DT515294 WS02427.B21_C21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02427_C21 3', mRNA sequence
Length = 827
Score = 71.9 bits (36), Expect = 6e-011
Identities = 132/164 (80%)
Strand = Plus / Minus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
||||||| ||||| ||||| ||||| || |||||||| || || || || || |||||||
Sbjct: 549 tgatcattacagattactgtatgccaggaatgacaggctacgatctcctaaaaaagatca 490
Query: 509 aggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaacattcctt 568
|||| || || | ||| |||||||| || |||||||||||||| ||||| | || |
Sbjct: 489 aggaatccaagtatttcaaggatatcccagttgtgatcatgtcctcagagaatgtcccct 430
Query: 569 caaggatcaataggtgcctggaggaaggagctgacgagttcttc 612
|||| |||||||| ||| |||| |||||||| || |||||||||
Sbjct: 429 caagaatcaatagatgcttggaagaaggagcagaagagttcttc 386
>gb|CV249287.1|CV249287 WS01123.B21_K04 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01123_K04 3', mRNA sequence
Length = 682
Score = 67.9 bits (34), Expect = 9e-010
Identities = 85/102 (83%)
Strand = Plus / Minus
Query: 460 gactactgcatgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcgtcg 519
|||||||| |||||||| |||||||||||||| |||||||||| |||||||| || ||
Sbjct: 654 gactactgtatgcctggaatgacaggatatgagttgctcaagaaaatcaaggaatcatct 595
Query: 520 tctctcagagatatcccggtggtgatcatgtcctctgagaac 561
| ||||||| || ||||| ||||| ||||| || ||||||
Sbjct: 594 agtttcagagaaataccggttgtgattatgtcatcggagaac 553
Score = 48.1 bits (24), Expect = 9e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 111 gactactgcatgcctggcatgacaggatatga 142
|||||||| |||||||| ||||||||||||||
Sbjct: 654 gactactgtatgcctggaatgacaggatatga 623
>gb|CV258460.1|CV258460 WS0249.B21_J17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0249_J17 3', mRNA sequence
Length = 735
Score = 67.9 bits (34), Expect = 9e-010
Identities = 85/102 (83%)
Strand = Plus / Minus
Query: 460 gactactgcatgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcgtcg 519
|||||||| |||||||| |||||||||||||| |||||||||| |||||||| || ||
Sbjct: 619 gactactgtatgcctggaatgacaggatatgagttgctcaagaaaatcaaggaatcatct 560
Query: 520 tctctcagagatatcccggtggtgatcatgtcctctgagaac 561
| ||||||| || ||||| ||||| ||||| || ||||||
Sbjct: 559 agtttcagagaaataccggttgtgattatgtcatcggagaac 518
Score = 48.1 bits (24), Expect = 9e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 111 gactactgcatgcctggcatgacaggatatga 142
|||||||| |||||||| ||||||||||||||
Sbjct: 619 gactactgtatgcctggaatgacaggatatga 588
>gb|CV262794.1|CV262794 WS0202.B21_I13 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0202_I13 3', mRNA sequence
Length = 913
Score = 67.9 bits (34), Expect = 9e-010
Identities = 85/102 (83%)
Strand = Plus / Minus
Query: 460 gactactgcatgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcgtcg 519
|||||||| |||||||| |||||||||||||| |||||||||| |||||||| || ||
Sbjct: 619 gactactgtatgcctggaatgacaggatatgagttgctcaagaaaatcaaggaatcatct 560
Query: 520 tctctcagagatatcccggtggtgatcatgtcctctgagaac 561
| ||||||| || ||||| ||||| ||||| || ||||||
Sbjct: 559 agtttcagagaaataccggttgtgattatgtcatcggagaac 518
Score = 48.1 bits (24), Expect = 9e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 111 gactactgcatgcctggcatgacaggatatga 142
|||||||| |||||||| ||||||||||||||
Sbjct: 619 gactactgtatgcctggaatgacaggatatga 588
>gb|CV267694.1|CV267694 WS02032.B21_H03 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02032_H03 3', mRNA sequence
Length = 947
Score = 67.9 bits (34), Expect = 9e-010
Identities = 85/102 (83%)
Strand = Plus / Minus
Query: 460 gactactgcatgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcgtcg 519
|||||||| |||||||| |||||||||||||| |||||||||| |||||||| || ||
Sbjct: 715 gactactgtatgcctggaatgacaggatatgagttgctcaagaaaatcaaggaatcatct 656
Query: 520 tctctcagagatatcccggtggtgatcatgtcctctgagaac 561
| ||||||| || ||||| ||||| ||||| || ||||||
Sbjct: 655 agtttcagagaaataccggttgtgattatgtcatcggagaac 614
Score = 48.1 bits (24), Expect = 9e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 111 gactactgcatgcctggcatgacaggatatga 142
|||||||| |||||||| ||||||||||||||
Sbjct: 715 gactactgtatgcctggaatgacaggatatga 684
>gb|CV281060.1|CV281060 WS0138.B21_N14 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0138_N14 3', mRNA sequence
Length = 908
Score = 67.9 bits (34), Expect = 9e-010
Identities = 85/102 (83%)
Strand = Plus / Minus
Query: 460 gactactgcatgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcgtcg 519
|||||||| |||||||| |||||||||||||| |||||||||| |||||||| || ||
Sbjct: 539 gactactgtatgcctggaatgacaggatatgagttgctcaagaaaatcaaggaatcatct 480
Query: 520 tctctcagagatatcccggtggtgatcatgtcctctgagaac 561
| ||||||| || ||||| ||||| ||||| || ||||||
Sbjct: 479 agtttcagagaaataccggttgtgattatgtcatcggagaac 438
Score = 48.1 bits (24), Expect = 9e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 111 gactactgcatgcctggcatgacaggatatga 142
|||||||| |||||||| ||||||||||||||
Sbjct: 539 gactactgtatgcctggaatgacaggatatga 508
>gb|DT496515.1|DT496515 WS01123.BR_K04 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01123_K04 5', mRNA sequence
Length = 888
Score = 67.9 bits (34), Expect = 9e-010
Identities = 85/102 (83%)
Strand = Plus / Plus
Query: 460 gactactgcatgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcgtcg 519
|||||||| |||||||| |||||||||||||| |||||||||| |||||||| || ||
Sbjct: 420 gactactgtatgcctggaatgacaggatatgagttgctcaagaaaatcaaggaatcatct 479
Query: 520 tctctcagagatatcccggtggtgatcatgtcctctgagaac 561
| ||||||| || ||||| ||||| ||||| || ||||||
Sbjct: 480 agtttcagagaaataccggttgtgattatgtcatcggagaac 521
Score = 48.1 bits (24), Expect = 9e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 111 gactactgcatgcctggcatgacaggatatga 142
|||||||| |||||||| ||||||||||||||
Sbjct: 420 gactactgtatgcctggaatgacaggatatga 451
>gb|DT504059.1|DT504059 WS0138.BR_N14 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0138_N14 5', mRNA sequence
Length = 891
Score = 67.9 bits (34), Expect = 9e-010
Identities = 85/102 (83%)
Strand = Plus / Plus
Query: 460 gactactgcatgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcgtcg 519
|||||||| |||||||| |||||||||||||| |||||||||| |||||||| || ||
Sbjct: 420 gactactgtatgcctggaatgacaggatatgagttgctcaagaaaatcaaggaatcatct 479
Query: 520 tctctcagagatatcccggtggtgatcatgtcctctgagaac 561
| ||||||| || ||||| ||||| ||||| || ||||||
Sbjct: 480 agtttcagagaaataccggttgtgattatgtcatcggagaac 521
Score = 48.1 bits (24), Expect = 9e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 111 gactactgcatgcctggcatgacaggatatga 142
|||||||| |||||||| ||||||||||||||
Sbjct: 420 gactactgtatgcctggaatgacaggatatga 451
>gb|AJ773034.1|AJ773034 AJ773034 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0000200004A06F1, mRNA sequence
Length = 641
Score = 65.9 bits (33), Expect = 4e-009
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 463 tactgcatgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcgtcgtct 522
|||| |||||| || |||||||||||||| ||||| || ||||| ||||| || || ||
Sbjct: 456 tactccatgccggggatgacaggatatgagctgcttaaaaagattaaggaatcatcagct 515
Query: 523 ctcagagatatcccggtggtgatcatgtcctctgagaacat 563
||||||| || || || ||||||||||| |||||||||||
Sbjct: 516 ttcagagagattcctgtagtgatcatgtcatctgagaacat 556
>gb|DT488603.1|DT488603 WS02536.B21_O08 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02536_O08 3', mRNA sequence
Length = 855
Score = 65.9 bits (33), Expect = 4e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 460 gactactgcatgcctggcatgacaggatatgacctgctcaagaagatcaagga 512
|||||||| |||||||| |||||||||||||| |||||||||| ||||||||
Sbjct: 577 gactactgtatgcctggaatgacaggatatgagttgctcaagaaaatcaagga 525
Score = 48.1 bits (24), Expect = 9e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 111 gactactgcatgcctggcatgacaggatatga 142
|||||||| |||||||| ||||||||||||||
Sbjct: 577 gactactgtatgcctggaatgacaggatatga 546
>gb|DT509121.1|DT509121 WS02422.BR_N22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_N22 5', mRNA sequence
Length = 828
Score = 65.9 bits (33), Expect = 4e-009
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 463 tactgcatgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcgtcgtct 522
|||| |||||| || |||||||||||||| ||||| || ||||| ||||| || || ||
Sbjct: 413 tactccatgccggggatgacaggatatgagctgcttaaaaagattaaggaatcatcagct 472
Query: 523 ctcagagatatcccggtggtgatcatgtcctctgagaacat 563
||||||| || || || ||||||||||| |||||||||||
Sbjct: 473 ttcagagagattcctgtagtgatcatgtcatctgagaacat 513
>gb|DT513738.1|DT513738 WS02422.B21_N22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_N22 3', mRNA sequence
Length = 757
Score = 63.9 bits (32), Expect = 1e-008
Identities = 80/96 (83%)
Strand = Plus / Minus
Query: 468 catgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcgtcgtctctcag 527
|||||| || |||||||||||||| ||||| || ||||| ||||| || || || ||||
Sbjct: 756 catgccggggatgacaggatatgagctgcttaaaaagattaaggaatcatcagctttcag 697
Query: 528 agatatcccggtggtgatcatgtcctctgagaacat 563
||| || || || ||||||||||| |||||||||||
Sbjct: 696 agagattcctgtagtgatcatgtcatctgagaacat 661
>gb|DT511005.1|DT511005 WS02429.BR_E20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_E20 5', mRNA sequence
Length = 764
Score = 61.9 bits (31), Expect = 6e-008
Identities = 133/167 (79%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
||||||| ||||| ||||| ||||| || |||||||| ||||| || || || |||||||
Sbjct: 303 tgatcattacagattactgtatgccaggaatgacaggctatgatcttctaaaaaagatca 362
Query: 509 aggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaacattcctt 568
|||| || | | ||| || ||||| || |||||||||||||| ||||| | || |
Sbjct: 363 aggaatctaaatatttcaaggacatcccagttgtgatcatgtcctcagagaatgtcccat 422
Query: 569 caaggatcaataggtgcctggaggaaggagctgacgagttcttccta 615
|||| ||||| || ||||| | ||||||||||| ||||||||||||
Sbjct: 423 caagaatcaacagatgcctaaaagaaggagctgaagagttcttccta 469
>gb|DT515704.1|DT515704 WS02429.B21.1_E20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_E20 3', mRNA sequence
Length = 764
Score = 61.9 bits (31), Expect = 6e-008
Identities = 133/167 (79%)
Strand = Plus / Minus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
||||||| ||||| ||||| ||||| || |||||||| ||||| || || || |||||||
Sbjct: 462 tgatcattacagattactgtatgccaggaatgacaggctatgatcttctaaaaaagatca 403
Query: 509 aggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaacattcctt 568
|||| || | | ||| || ||||| || |||||||||||||| ||||| | || |
Sbjct: 402 aggaatctaaatatttcaaggacatcccagttgtgatcatgtcctcagagaatgtcccat 343
Query: 569 caaggatcaataggtgcctggaggaaggagctgacgagttcttccta 615
|||| ||||| || ||||| | ||||||||||| ||||||||||||
Sbjct: 342 caagaatcaacagatgcctaaaagaaggagctgaagagttcttccta 296
>gb|CV239872.1|CV239872 WS0233.B21_L16 PT-MB-A-13 Populus trichocarpa cDNA clone WS0233_L16
3', mRNA sequence
Length = 687
Score = 58.0 bits (29), Expect = 9e-007
Identities = 119/149 (79%)
Strand = Plus / Minus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
||||||| ||||| ||||| ||||| || |||||||| || || || || || |||||||
Sbjct: 315 tgatcattacagattactgtatgccaggaatgacaggctacgatctcctaaaaaagatca 256
Query: 509 aggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaacattcctt 568
|||| || || | ||| |||||||| || |||||||||||||| ||||| | || |
Sbjct: 255 aggaatccaagtatttcaaggatatcccagttgtgatcatgtcctcagagaatgtcccct 196
Query: 569 caaggatcaataggtgcctggaggaagga 597
|||| |||||||| ||| |||| ||||||
Sbjct: 195 caagaatcaatagatgcttggaagaagga 167
>gb|DN496497.1|DN496497 P072F11.5pR Populus petioles cDNA library Populus tremula cDNA
clone P072F11 5', mRNA sequence
Length = 317
Score = 58.0 bits (29), Expect = 9e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 460 gactactgcatgcctggcatgacaggatatgacctgctcaa 500
|||||||| |||||||| |||||||||||||| ||||||||
Sbjct: 191 gactactgtatgcctggaatgacaggatatgagctgctcaa 231
Score = 48.1 bits (24), Expect = 9e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 111 gactactgcatgcctggcatgacaggatatga 142
|||||||| |||||||| ||||||||||||||
Sbjct: 191 gactactgtatgcctggaatgacaggatatga 222
>gb|DT508783.1|DT508783 WS02421.BR_O21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02421_O21 5', mRNA sequence
Length = 698
Score = 54.0 bits (27), Expect = 1e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 532 atcccggtggtgatcatgtcctctgagaacattccttcaaggatcaataggtgcctggag 591
||||| || |||||||||||||| ||||| | || ||||| ||||| || ||||| |
Sbjct: 495 atcccagttgtgatcatgtcctcagagaatgtcccatcaagaatcaacagatgcctaaaa 554
Query: 592 gaaggagctgacgagttcttcct 614
||||||||||| |||||||||||
Sbjct: 555 gaaggagctgaagagttcttcct 577
>gb|DT513392.1|DT513392 WS02421.B21_O21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02421_O21 3', mRNA sequence
Length = 698
Score = 54.0 bits (27), Expect = 1e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 532 atcccggtggtgatcatgtcctctgagaacattccttcaaggatcaataggtgcctggag 591
||||| || |||||||||||||| ||||| | || ||||| ||||| || ||||| |
Sbjct: 204 atcccagttgtgatcatgtcctcagagaatgtcccatcaagaatcaacagatgcctaaaa 145
Query: 592 gaaggagctgacgagttcttcct 614
||||||||||| |||||||||||
Sbjct: 144 gaaggagctgaagagttcttcct 122
>gb|DN493585.1|DN493585 F104P15.5pR Populus flower cDNA library Populus trichocarpa cDNA
clone F104P15 5', mRNA sequence
Length = 533
Score = 52.0 bits (26), Expect = 6e-005
Identities = 84/102 (82%), Gaps = 1/102 (0%)
Strand = Plus / Plus
Query: 463 tactgcatgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcgtcgtct 522
|||| |||||| || |||||||||||||| ||||| || ||||| ||||| || || ||
Sbjct: 353 tactccatgccggggatgacaggatatgagctgcttaaaaagattaaggaatcatcagct 412
Query: 523 ctcagagatatcccggtggtgat-catgtcctctgagaacat 563
||||||| || || || ||||| |||||| |||||||||||
Sbjct: 413 ttcagagagattcctgtagtgatccatgtcatctgagaacat 454
>gb|DT524629.1|DT524629 WS02043.C21_C20 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02043_C20 3', mRNA sequence
Length = 573
Score = 48.1 bits (24), Expect = 9e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 473 ctggcatgacaggatatgacctgctcaagaagatcaagga 512
|||| |||||||||||||| |||||||||| ||||||||
Sbjct: 565 ctggaatgacaggatatgagttgctcaagaaaatcaagga 526
>gb|CX183946.1|CX183946 D09_45-2_07.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 696
Score = 44.1 bits (22), Expect = 0.014
Identities = 84/104 (80%), Gaps = 3/104 (2%)
Strand = Plus / Plus
Query: 463 tactgcatgcctggcatgacaggatatgacctgctcaagaagatcaaggag---tcgtcg 519
|||| |||||| || |||||||||||||| ||||| || ||||| ||| || || ||
Sbjct: 486 tactccatgccggggatgacaggatatgagctgcttaaaaagattaagcaggaatcatca 545
Query: 520 tctctcagagatatcccggtggtgatcatgtcctctgagaacat 563
|| ||||||| || || || ||||||||||| |||||||||||
Sbjct: 546 gctttcagagagattcctgtagtgatcatgtcatctgagaacat 589
>gb|DT475691.1|DT475691 WS0127.BR_O12 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0127_O12 5', mRNA sequence
Length = 568
Score = 44.1 bits (22), Expect = 0.014
Identities = 84/104 (80%), Gaps = 3/104 (2%)
Strand = Plus / Plus
Query: 463 tactgcatgcctggcatgacaggatatgacctgctcaagaagatcaaggag---tcgtcg 519
|||| |||||| || |||||||||||||| ||||| || ||||| ||| || || ||
Sbjct: 380 tactccatgccggggatgacaggatatgagctgcttaaaaagattaagcaggaatcatca 439
Query: 520 tctctcagagatatcccggtggtgatcatgtcctctgagaacat 563
|| ||||||| || || || ||||||||||| |||||||||||
Sbjct: 440 gctttcagagagattcctgtagtgatcatgtcatctgagaacat 483
>gb|BU827173.1|BU827173 UK129TC12 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 573
Score = 42.1 bits (21), Expect = 0.054
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 460 gactactgcatgcctggcatgacaggata 488
|||||||| |||||||| |||||||||||
Sbjct: 545 gactactgtatgcctggaatgacaggata 573
Score = 42.1 bits (21), Expect = 0.054
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 111 gactactgcatgcctggcatgacaggata 139
|||||||| |||||||| |||||||||||
Sbjct: 545 gactactgtatgcctggaatgacaggata 573
>gb|CV242865.1|CV242865 WS02516.B21.1_E03 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02516_E03 3', mRNA sequence
Length = 869
Score = 40.1 bits (20), Expect = 0.21
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 524 tcagagatatcccggtggtgatcatgtcctctgagaacat 563
||||||| || || || ||||||||||| |||||||||||
Sbjct: 842 tcagagagattcctgtagtgatcatgtcatctgagaacat 803
>gb|DN496861.1|DN496861 Q021C01.5pR Populus dormant bud cDNA library Populus tremula cDNA
clone Q021C01 5', mRNA sequence
Length = 619
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 216 catggcggcggtggccacag 235
||||||||||||||||||||
Sbjct: 276 catggcggcggtggccacag 295
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 168,910
Number of Sequences: 369679
Number of extensions: 168910
Number of successful extensions: 47979
Number of sequences better than 0.5: 42
Number of HSP's better than 0.5 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47850
Number of HSP's gapped (non-prelim): 128
length of query: 1343
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1324
effective length of database: 196,384,763
effective search space: 260013426212
effective search space used: 260013426212
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)