BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2455878.2.1
         (1327 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BP931253.1|BP931253  BP931253 full-length enriched poplar...    40   0.21 
gb|BP935011.1|BP935011  BP935011 full-length enriched poplar...    40   0.21 

>gb|BP931253.1|BP931253 BP931253 full-length enriched poplar cDNA library Populus nigra
           cDNA clone PnFL1-020_L12.r 3', mRNA sequence
          Length = 611

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 1   gagggaagaacgaagagagatcag 24
           |||||||||| |||||||||||||
Sbjct: 198 gagggaagaaggaagagagatcag 175



>gb|BP935011.1|BP935011 BP935011 full-length enriched poplar cDNA library Populus nigra
           cDNA clone PnFL1-072_F24.r 3', mRNA sequence
          Length = 473

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 1   gagggaagaacgaagagagatcag 24
           |||||||||| |||||||||||||
Sbjct: 206 gagggaagaaggaagagagatcag 183



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 111,491
Number of Sequences: 369679
Number of extensions: 111491
Number of successful extensions: 30934
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30932
Number of HSP's gapped (non-prelim): 2
length of query: 1327
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1308
effective length of database: 196,384,763
effective search space: 256871270004
effective search space used: 256871270004
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)