BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455862.2.1
(712 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB240338.1|CB240338 PopSC00317 Poplar SC cDNA library Po... 40 0.11
gb|AJ776221.1|AJ776221 AJ776221 Populus euphratica root 3-6... 38 0.44
>gb|CB240338.1|CB240338 PopSC00317 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PopSC00317, mRNA sequence
Length = 216
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 601 tttctctctgttttttcttt 620
||||||||||||||||||||
Sbjct: 61 tttctctctgttttttcttt 80
>gb|AJ776221.1|AJ776221 AJ776221 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400010F01F1, mRNA sequence
Length = 551
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 81 gcagcaggggaaggtgaag 99
|||||||||||||||||||
Sbjct: 177 gcagcaggggaaggtgaag 159
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 65,051
Number of Sequences: 369679
Number of extensions: 65051
Number of successful extensions: 19056
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19054
Number of HSP's gapped (non-prelim): 2
length of query: 712
length of database: 203,408,664
effective HSP length: 19
effective length of query: 693
effective length of database: 196,384,763
effective search space: 136094640759
effective search space used: 136094640759
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)