BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441058.2.1
(1000 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV229914.1|CV229914 WS01914.B21_N15 PT-DX-N-A-10 Populus... 159 2e-037
gb|CV227530.1|CV227530 WS0167.B21_H04 PT-DX-A-7 Populus tri... 151 6e-035
gb|DT515133.1|DT515133 WS02426.B21_L19 PTxD-ICC-N-A-14 Popu... 151 6e-035
gb|CV271784.1|CV271784 WS0155.B21_K19 PTxN-IB-A-6 Populus t... 143 1e-032
gb|DT487289.1|DT487289 WS02533.B21_E18 PT-MB-N-A-15 Populus... 113 1e-023
gb|BI121416.1|BI121416 F036P46Y Populus flower cDNA library... 107 8e-022
gb|CK090975.1|CK090975 F036P46.3pR Populus flower cDNA libr... 107 8e-022
gb|CV268602.1|CV268602 WS0205.B21_P03 PTxN-IB-N-A-11 Populu... 107 8e-022
gb|DN489034.1|DN489034 S071H03.3pR Populus imbibed seed cDN... 107 8e-022
gb|DT517065.1|DT517065 WS02433.B21_D05 PTxD-ICC-N-A-14 Popu... 107 8e-022
gb|CV227816.1|CV227816 WS0168.B21_E19 PT-DX-A-7 Populus tri... 100 2e-019
gb|AJ768174.1|AJ768174 AJ768174 Populus euphratica leaf adu... 68 7e-010
gb|DT517067.1|DT517067 WS02433.B21_D07 PTxD-ICC-N-A-14 Popu... 52 4e-005
gb|AJ772733.1|AJ772733 AJ772733 Populus euphratica shoot in... 40 0.16
>gb|CV229914.1|CV229914 WS01914.B21_N15 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01914_N15 3', mRNA sequence
Length = 720
Score = 159 bits (80), Expect = 2e-037
Identities = 287/356 (80%)
Strand = Plus / Minus
Query: 379 actgccactattgttggcgatgtctatatccatccatctgccaaggtgcatcctacttca 438
||||| || ||||||| ||||| ||||| |||||||| || || || ||||| ||| |
Sbjct: 514 actgctaccattgttgatgatgtttatatacatccatcagcaaaagtacatccaactgct 455
Query: 439 aagattggcccaaatgtctctatatcagcaaatgcacgcgttggagctggtgccaggctt 498
|||||||| || |||||||||||||| || ||||| || | ||| | ||||| || ||
Sbjct: 454 aagattggtcccaatgtctctatatccgctaatgctcgtataggaccaggtgcaagactc 395
Query: 499 atcaattgcataattctggatgatgttgaaattatggaaaatgctgttgttatacattca 558
||| ||| || || || ||||| |||||||| ||||||||||| ||||| || ||||||
Sbjct: 394 atctgttgtatcatcctagatgacgttgaaatcatggaaaatgcagttgtcattcattca 335
Query: 559 attgtagggtggaaatcatccattggaaaatggtcacgtgtacagggcgaaggtgatcac 618
||||| ||||||||||| |||||||| | |||||| ||||| |||| ||||| || ||
Sbjct: 334 attgtcgggtggaaatcttccattgggagatggtcccgtgtccaggctgaaggggactac 275
Query: 619 aatgccaaacttggcattactattcttggtgaagccgttgatgttgaagatgaagtagtt 678
|| ||||| ||||| |||| |||||||| ||||| ||| ||||||||||||||| ||
Sbjct: 274 aacgccaagcttggggttacaattcttggcgaagctgttactgttgaagatgaagtggtg 215
Query: 679 gtagttaacagcatcgtgctcccaaataaaactctcaatgtcagtgtccaagagga 734
|| ||||||||||| || ||||| || || || |||||||| ||||| || |||||
Sbjct: 214 gtggttaacagcattgtcctcccgaacaagacactcaatgttagtgttcaggagga 159
Score = 40.1 bits (20), Expect = 0.16
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 268 ttctgggaacagatcaaaaccccagggatgtctttgagatgctctgggttatatct 323
||||||||||| |||||||| || || |||||| | | |||||||| ||||||||
Sbjct: 625 ttctgggaacaaatcaaaactcctggaatgtctctaaagtgctctggtttatatct 570
>gb|CV227530.1|CV227530 WS0167.B21_H04 PT-DX-A-7 Populus trichocarpa cDNA clone WS0167_H04
3', mRNA sequence
Length = 896
Score = 151 bits (76), Expect = 6e-035
Identities = 286/356 (80%)
Strand = Plus / Minus
Query: 379 actgccactattgttggcgatgtctatatccatccatctgccaaggtgcatcctacttca 438
||||| || ||||||| ||||| ||||| |||||||| || || || ||||| ||| |
Sbjct: 568 actgctaccattgttgatgatgtttatatacatccatcagcaaaagtacatccaactgcc 509
Query: 439 aagattggcccaaatgtctctatatcagcaaatgcacgcgttggagctggtgccaggctt 498
||||||||||| |||||||||||||| || ||||| || | ||| | ||||| || ||
Sbjct: 508 aagattggccccaatgtctctatatccgctaatgctcgtataggaccaggtgcaagactc 449
Query: 499 atcaattgcataattctggatgatgttgaaattatggaaaatgctgttgttatacattca 558
||| ||| || || || ||||| |||||| | ||||||||||| ||||| || ||||||
Sbjct: 448 atctgttgtatcatcctagatgacgttgaagtcatggaaaatgcagttgtcattcattca 389
Query: 559 attgtagggtggaaatcatccattggaaaatggtcacgtgtacagggcgaaggtgatcac 618
||||| |||||||| || |||||||| | |||||| ||||| |||| ||||| || ||
Sbjct: 388 attgtcgggtggaagtcttccattgggagatggtcccgtgtccaggctgaaggggactac 329
Query: 619 aatgccaaacttggcattactattcttggtgaagccgttgatgttgaagatgaagtagtt 678
|| ||||| ||||| |||| |||||||| ||||| ||| ||||||||||||||| ||
Sbjct: 328 aacgccaagcttggggttacaattcttggcgaagctgttactgttgaagatgaagtggtg 269
Query: 679 gtagttaacagcatcgtgctcccaaataaaactctcaatgtcagtgtccaagagga 734
|| ||||||||||| || ||||| || || || |||||||| ||||| || |||||
Sbjct: 268 gtggttaacagcattgtcctcccgaacaagacactcaatgttagtgttcaggagga 213
Score = 40.1 bits (20), Expect = 0.16
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 268 ttctgggaacagatcaaaaccccagggatgtctttgagatgctctgggttatatct 323
||||||||||| |||||||| || || |||||| | | |||||||| ||||||||
Sbjct: 679 ttctgggaacaaatcaaaactcctggaatgtctctaaagtgctctggtttatatct 624
>gb|DT515133.1|DT515133 WS02426.B21_L19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02426_L19 3', mRNA sequence
Length = 890
Score = 151 bits (76), Expect = 6e-035
Identities = 286/356 (80%)
Strand = Plus / Minus
Query: 379 actgccactattgttggcgatgtctatatccatccatctgccaaggtgcatcctacttca 438
||||| || ||||||| ||||| ||||| |||||||| || || || ||||| ||| |
Sbjct: 570 actgctaccattgttgatgatgtttatatacatccatcagcaaaagtacatccaactgcc 511
Query: 439 aagattggcccaaatgtctctatatcagcaaatgcacgcgttggagctggtgccaggctt 498
||||||||||| |||||||||||||| || ||||| || | ||| | ||||| || ||
Sbjct: 510 aagattggccccaatgtctctatatccgctaatgctcgtataggaccaggtgcaagactc 451
Query: 499 atcaattgcataattctggatgatgttgaaattatggaaaatgctgttgttatacattca 558
||| ||| || || || ||||| |||||| | ||||||||||| ||||| || ||||||
Sbjct: 450 atctgttgtatcatcctagatgacgttgaagtcatggaaaatgcagttgtcattcattca 391
Query: 559 attgtagggtggaaatcatccattggaaaatggtcacgtgtacagggcgaaggtgatcac 618
||||| |||||||| || |||||||| | |||||| ||||| |||| ||||| || ||
Sbjct: 390 attgtcgggtggaagtcttccattgggagatggtcccgtgtccaggctgaaggggactac 331
Query: 619 aatgccaaacttggcattactattcttggtgaagccgttgatgttgaagatgaagtagtt 678
|| ||||| ||||| |||| |||||||| ||||| ||| ||||||||||||||| ||
Sbjct: 330 aacgccaagcttggggttacaattcttggcgaagctgttactgttgaagatgaagtggtg 271
Query: 679 gtagttaacagcatcgtgctcccaaataaaactctcaatgtcagtgtccaagagga 734
|| ||||||||||| || ||||| || || || |||||||| ||||| || |||||
Sbjct: 270 gtggttaacagcattgtcctcccgaacaagacactcaatgttagtgttcaggagga 215
Score = 40.1 bits (20), Expect = 0.16
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 268 ttctgggaacagatcaaaaccccagggatgtctttgagatgctctgggttatatct 323
||||||||||| |||||||| || || |||||| | | |||||||| ||||||||
Sbjct: 681 ttctgggaacaaatcaaaactcctggaatgtctctaaagtgctctggtttatatct 626
>gb|CV271784.1|CV271784 WS0155.B21_K19 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0155_K19 3', mRNA sequence
Length = 885
Score = 143 bits (72), Expect = 1e-032
Identities = 285/356 (80%)
Strand = Plus / Minus
Query: 379 actgccactattgttggcgatgtctatatccatccatctgccaaggtgcatcctacttca 438
||||| || ||||||| ||||| ||||| |||||||| || || || ||||| ||| |
Sbjct: 524 actgctaccattgttgatgatgtttatatacatccatcagcaaaagtacatccaactgcc 465
Query: 439 aagattggcccaaatgtctctatatcagcaaatgcacgcgttggagctggtgccaggctt 498
|||||||| || |||||||||||||| || ||||| || | ||| | ||||| || ||
Sbjct: 464 aagattggtcccaatgtctctatatccgctaatgctcgtataggaccaggtgcaagactc 405
Query: 499 atcaattgcataattctggatgatgttgaaattatggaaaatgctgttgttatacattca 558
||| ||| || || || ||||| |||||| | ||||||||||| ||||| || ||||||
Sbjct: 404 atctgttgtatcatcctagatgacgttgaagtcatggaaaatgcagttgtcattcattca 345
Query: 559 attgtagggtggaaatcatccattggaaaatggtcacgtgtacagggcgaaggtgatcac 618
||||| |||||||| || |||||||| | |||||| ||||| |||| ||||| || ||
Sbjct: 344 attgtcgggtggaagtcttccattgggagatggtcccgtgtccaggctgaaggggactac 285
Query: 619 aatgccaaacttggcattactattcttggtgaagccgttgatgttgaagatgaagtagtt 678
|| ||||| ||||| |||| |||||||| ||||| ||| ||||||||||||||| ||
Sbjct: 284 aacgccaagcttggggttacaattcttggcgaagctgttactgttgaagatgaagtggtg 225
Query: 679 gtagttaacagcatcgtgctcccaaataaaactctcaatgtcagtgtccaagagga 734
|| ||||||||||| || ||||| || || || |||||||| ||||| || |||||
Sbjct: 224 gtggttaacagcattgtcctcccgaacaagacactcaatgttagtgttcaggagga 169
Score = 40.1 bits (20), Expect = 0.16
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 268 ttctgggaacagatcaaaaccccagggatgtctttgagatgctctgggttatatct 323
||||||||||| |||||||| || || |||||| | | |||||||| ||||||||
Sbjct: 635 ttctgggaacaaatcaaaactcctggaatgtctctaaagtgctctggtttatatct 580
>gb|DT487289.1|DT487289 WS02533.B21_E18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02533_E18 3', mRNA sequence
Length = 891
Score = 113 bits (57), Expect = 1e-023
Identities = 165/201 (82%)
Strand = Plus / Minus
Query: 534 ggaaaatgctgttgttatacattcaattgtagggtggaaatcatccattggaaaatggtc 593
||||||||| ||||| || ||||||||||| |||||||| || |||||||| | ||||||
Sbjct: 359 ggaaaatgcagttgtcattcattcaattgtcgggtggaagtcttccattgggagatggtc 300
Query: 594 acgtgtacagggcgaaggtgatcacaatgccaaacttggcattactattcttggtgaagc 653
||||| |||| ||||| || |||| ||||| ||||| |||| |||||||| |||||
Sbjct: 299 ccgtgtccaggctgaaggggactacaacgccaagcttggggttacaattcttggcgaagc 240
Query: 654 cgttgatgttgaagatgaagtagttgtagttaacagcatcgtgctcccaaataaaactct 713
||| ||||||||||||||| || || ||||||||||| || ||||| || || || ||
Sbjct: 239 tgttactgttgaagatgaagtggtggtggttaacagcattgtcctcccgaacaagacact 180
Query: 714 caatgtcagtgtccaagagga 734
|||||| ||||| || |||||
Sbjct: 179 caatgttagtgttcaggagga 159
Score = 54.0 bits (27), Expect = 1e-005
Identities = 78/95 (82%)
Strand = Plus / Minus
Query: 379 actgccactattgttggcgatgtctatatccatccatctgccaaggtgcatcctacttca 438
||||| || ||||||| ||||| ||||| |||||||| || || || ||||| ||| |
Sbjct: 467 actgctaccattgttgatgatgtttatatacatccatcagcaaaagtacatccaactgct 408
Query: 439 aagattggcccaaatgtctctatatcagcaaatgc 473
|||||||| || |||||||||||||| || |||||
Sbjct: 407 aagattggtcccaatgtctctatatccgctaatgc 373
Score = 40.1 bits (20), Expect = 0.16
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 268 ttctgggaacagatcaaaaccccagggatgtctttgagatgctctgggttatatct 323
||||||||||| |||||||| || || |||||| | | |||||||| ||||||||
Sbjct: 578 ttctgggaacaaatcaaaactcctggaatgtctctaaagtgctctggtttatatct 523
>gb|BI121416.1|BI121416 F036P46Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 444
Score = 107 bits (54), Expect = 8e-022
Identities = 243/306 (79%)
Strand = Plus / Plus
Query: 397 gatgtctatatccatccatctgccaaggtgcatcctacttcaaagattggcccaaatgtc 456
||||| ||||| |||||||| || || || ||||| ||| | |||||||| || ||||||
Sbjct: 79 gatgtttatatacatccatcagcaaaagtacatccaactgctaagattggtcccaatgtc 138
Query: 457 tctatatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcataattctg 516
|||||||| || ||||| ||| | ||| | ||||| || || || | || || || |
Sbjct: 139 tctatatctgccaatgctcgcataggaccaggtgcaagactcataaggtgtatcatctta 198
Query: 517 gatgatgttgaaattatggaaaatgctgttgttatacattcaattgtagggtggaaatca 576
||| |||||||| | ||||||||||| || || || |||||||||| |||||||| ||
Sbjct: 199 gataatgttgaagtcatggaaaatgcagtcgtcatttattcaattgttgggtggaactct 258
Query: 577 tccattggaaaatggtcacgtgtacagggcgaaggtgatcacaatgccaaacttggcatt 636
|||||||| | |||||| ||||| |||| ||||||||| |||||||||| ||||| ||
Sbjct: 259 tccattgggagatggtcccgtgtccaggctgaaggtgattacaatgccaagcttggggtt 318
Query: 637 actattcttggtgaagccgttgatgttgaagatgaagtagttgtagttaacagcatcgtg 696
|| || ||||| |||| ||| |||||| ||||||||||| || |||||||||| ||
Sbjct: 319 acaatccttggcgaaggtgttactgttgaggatgaagtagtggtgattaacagcattgtc 378
Query: 697 ctccca 702
||||||
Sbjct: 379 ctccca 384
>gb|CK090975.1|CK090975 F036P46.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F036P46 3', mRNA sequence
Length = 575
Score = 107 bits (54), Expect = 8e-022
Identities = 243/306 (79%)
Strand = Plus / Minus
Query: 397 gatgtctatatccatccatctgccaaggtgcatcctacttcaaagattggcccaaatgtc 456
||||| ||||| |||||||| || || || ||||| ||| | |||||||| || ||||||
Sbjct: 498 gatgtttatatacatccatcagcaaaagtacatccaactgctaagattggtcccaatgtc 439
Query: 457 tctatatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcataattctg 516
|||||||| || ||||| ||| | ||| | ||||| || || || | || || || |
Sbjct: 438 tctatatctgccaatgctcgcataggaccaggtgcaagactcataaggtgtatcatctta 379
Query: 517 gatgatgttgaaattatggaaaatgctgttgttatacattcaattgtagggtggaaatca 576
||| |||||||| | ||||||||||| || || || |||||||||| |||||||| ||
Sbjct: 378 gataatgttgaagtcatggaaaatgcagtcgtcatttattcaattgttgggtggaactct 319
Query: 577 tccattggaaaatggtcacgtgtacagggcgaaggtgatcacaatgccaaacttggcatt 636
|||||||| | |||||| ||||| |||| ||||||||| |||||||||| ||||| ||
Sbjct: 318 tccattgggagatggtcccgtgtccaggctgaaggtgattacaatgccaagcttggggtt 259
Query: 637 actattcttggtgaagccgttgatgttgaagatgaagtagttgtagttaacagcatcgtg 696
|| || ||||| |||| ||| |||||| ||||||||||| || |||||||||| ||
Sbjct: 258 acaatccttggcgaaggtgttactgttgaggatgaagtagtggtgattaacagcattgtc 199
Query: 697 ctccca 702
||||||
Sbjct: 198 ctccca 193
>gb|CV268602.1|CV268602 WS0205.B21_P03 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0205_P03 3', mRNA sequence
Length = 569
Score = 107 bits (54), Expect = 8e-022
Identities = 243/306 (79%)
Strand = Plus / Minus
Query: 397 gatgtctatatccatccatctgccaaggtgcatcctacttcaaagattggcccaaatgtc 456
||||| ||||| |||||||| || || || ||||| ||| | |||||||| || ||||||
Sbjct: 497 gatgtttatatacatccatcagcaaaagtacatccaactgctaagattggtcccaatgtc 438
Query: 457 tctatatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcataattctg 516
|||||||| || ||||| ||| | ||| | ||||| || || || | || || || |
Sbjct: 437 tctatatctgccaatgctcgcataggaccaggtgcaagactcataaggtgtatcatctta 378
Query: 517 gatgatgttgaaattatggaaaatgctgttgttatacattcaattgtagggtggaaatca 576
||| |||||||| | ||||||||||| || || || |||||||||| |||||||| ||
Sbjct: 377 gataatgttgaagtcatggaaaatgcagtcgtcatttattcaattgttgggtggaactct 318
Query: 577 tccattggaaaatggtcacgtgtacagggcgaaggtgatcacaatgccaaacttggcatt 636
|||||||| | |||||| ||||| |||| ||||||||| |||||||||| ||||| ||
Sbjct: 317 tccattgggagatggtcccgtgtccaggctgaaggtgattacaatgccaagcttggggtt 258
Query: 637 actattcttggtgaagccgttgatgttgaagatgaagtagttgtagttaacagcatcgtg 696
|| || ||||| |||| ||| |||||| ||||||||||| || |||||||||| ||
Sbjct: 257 acaatccttggcgaaggtgttactgttgaggatgaagtagtggtgattaacagcattgtc 198
Query: 697 ctccca 702
||||||
Sbjct: 197 ctccca 192
>gb|DN489034.1|DN489034 S071H03.3pR Populus imbibed seed cDNA library Populus tremula cDNA
clone S071H03 3', mRNA sequence
Length = 684
Score = 107 bits (54), Expect = 8e-022
Identities = 243/306 (79%)
Strand = Plus / Minus
Query: 397 gatgtctatatccatccatctgccaaggtgcatcctacttcaaagattggcccaaatgtc 456
||||| ||||| |||||||| || || || ||||| ||| | |||||||| || ||||||
Sbjct: 472 gatgtttatatacatccatcagcaaaagtacatccaactgctaagattggtcccaatgtc 413
Query: 457 tctatatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcataattctg 516
|||||||| || ||||| || | ||| | ||||| ||||| || | || || || ||
Sbjct: 412 tctatatctgccaatgctcgtataggaccaggtgcaaggctcataaggtgtatcatccta 353
Query: 517 gatgatgttgaaattatggaaaatgctgttgttatacattcaattgtagggtggaaatca 576
||| | |||||| | ||||||||||| ||||| || |||||||||| |||||||| ||
Sbjct: 352 gataacgttgaagtcatggaaaatgcagttgtcatttattcaattgttgggtggaactct 293
Query: 577 tccattggaaaatggtcacgtgtacagggcgaaggtgatcacaatgccaaacttggcatt 636
|||||||| | |||||| ||||| |||| ||||||||| |||||||||| ||||| ||
Sbjct: 292 tccattgggagatggtcccgtgtccaggctgaaggtgattacaatgccaagcttggggtt 233
Query: 637 actattcttggtgaagccgttgatgttgaagatgaagtagttgtagttaacagcatcgtg 696
|| || ||||| |||| ||| |||||| |||||||| || || |||||||||| ||
Sbjct: 232 acaatccttggcgaaggtgttactgttgaggatgaagttgtggtgattaacagcattgtc 173
Query: 697 ctccca 702
||||||
Sbjct: 172 ctccca 167
>gb|DT517065.1|DT517065 WS02433.B21_D05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02433_D05 3', mRNA sequence
Length = 881
Score = 107 bits (54), Expect = 8e-022
Identities = 243/306 (79%)
Strand = Plus / Minus
Query: 397 gatgtctatatccatccatctgccaaggtgcatcctacttcaaagattggcccaaatgtc 456
||||| ||||| |||||||| || || || ||||| ||| | |||||||| || ||||||
Sbjct: 502 gatgtttatatacatccatcagcaaaagtacatccaactgctaagattggtcccaatgtc 443
Query: 457 tctatatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcataattctg 516
|||||||| || ||||| ||| | ||| | ||||| || || || | || || || |
Sbjct: 442 tctatatctgccaatgctcgcataggaccaggtgcaagactcataaggtgtatcatctta 383
Query: 517 gatgatgttgaaattatggaaaatgctgttgttatacattcaattgtagggtggaaatca 576
||| |||||||| | ||||||||||| || || || |||||||||| |||||||| ||
Sbjct: 382 gataatgttgaagtcatggaaaatgcagtcgtcatttattcaattgttgggtggaactct 323
Query: 577 tccattggaaaatggtcacgtgtacagggcgaaggtgatcacaatgccaaacttggcatt 636
|||||||| | |||||| ||||| |||| ||||||||| |||||||||| ||||| ||
Sbjct: 322 tccattgggagatggtcccgtgtccaggctgaaggtgattacaatgccaagcttggggtt 263
Query: 637 actattcttggtgaagccgttgatgttgaagatgaagtagttgtagttaacagcatcgtg 696
|| || ||||| |||| ||| |||||| ||||||||||| || |||||||||| ||
Sbjct: 262 acaatccttggcgaaggtgttactgttgaggatgaagtagtggtgattaacagcattgtc 203
Query: 697 ctccca 702
||||||
Sbjct: 202 ctccca 197
>gb|CV227816.1|CV227816 WS0168.B21_E19 PT-DX-A-7 Populus trichocarpa cDNA clone WS0168_E19
3', mRNA sequence
Length = 393
Score = 99.6 bits (50), Expect = 2e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 521 atgttgaaattatggaaaatgctgttgttatacattcaattgtagggtggaaatcatcca 580
|||||||| | ||||||||||| || || || |||||||||| |||||||| || ||||
Sbjct: 371 atgttgaagtcatggaaaatgcagtcgtcatttattcaattgttgggtggaactcttcca 312
Query: 581 ttggaaaatggtcacgtgtacagggcgaaggtgatcacaatgccaaacttggcattacta 640
|||| | |||||| ||||| |||| ||||||||| |||||||||| ||||| |||| |
Sbjct: 311 ttgggagatggtcccgtgtccaggctgaaggtgattacaatgccaagcttggggttacaa 252
Query: 641 ttcttggtgaagccgttgatgttgaagatgaagtagttgtagttaacagcatcgtgctcc 700
| ||||| |||| ||| |||||| ||||||||||| || |||||||||| || ||||
Sbjct: 251 tccttggcgaaggtgttactgttgaggatgaagtagtggtgattaacagcattgtcctcc 192
Query: 701 ca 702
||
Sbjct: 191 ca 190
>gb|AJ768174.1|AJ768174 AJ768174 Populus euphratica leaf adult Populus euphratica cDNA
clone P0000100014H07F1, mRNA sequence
Length = 646
Score = 67.9 bits (34), Expect = 7e-010
Identities = 151/190 (79%)
Strand = Plus / Plus
Query: 379 actgccactattgttggcgatgtctatatccatccatctgccaaggtgcatcctacttca 438
||||| || ||||||| ||||| ||||| |||||||| || || || ||||| ||| |
Sbjct: 457 actgctaccattgttgatgatgtttatatacatccatcagcaaaagtacatccaactgct 516
Query: 439 aagattggcccaaatgtctctatatcagcaaatgcacgcgttggagctggtgccaggctt 498
|||||||| || |||||||||||||| || ||||| || | ||| | ||||| || ||
Sbjct: 517 aagattggtcccaatgtctctatatccgctaatgctcgtataggaccaggtgcaagactc 576
Query: 499 atcaattgcataattctggatgatgttgaaattatggaaaatgctgttgttatacattca 558
||| ||| || || || ||||| |||||| | ||||||||||| ||||| || ||||||
Sbjct: 577 atctgttgtatcatcctagatgacgttgaagtcatggaaaatgcagttgtcattcattca 636
Query: 559 attgtagggt 568
||||| ||||
Sbjct: 637 attgtcgggt 646
Score = 40.1 bits (20), Expect = 0.16
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 268 ttctgggaacagatcaaaaccccagggatgtctttgagatgctctgggttatatct 323
||||||||||| |||||||| || || |||||| | | |||||||| ||||||||
Sbjct: 346 ttctgggaacaaatcaaaactcctggaatgtctctaaagtgctctggtttatatct 401
>gb|DT517067.1|DT517067 WS02433.B21_D07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02433_D07 3', mRNA sequence
Length = 594
Score = 52.0 bits (26), Expect = 4e-005
Identities = 86/106 (81%)
Strand = Plus / Minus
Query: 521 atgttgaaattatggaaaatgctgttgttatacattcaattgtagggtggaaatcatcca 580
|||||||| | |||||||| || || || || || |||||||| ||| |||| || ||||
Sbjct: 389 atgttgaagtcatggaaaacgcagtcgtcattcactcaattgttgggaggaactcttcca 330
Query: 581 ttggaaaatggtcacgtgtacagggcgaaggtgatcacaatgccaa 626
|| | | |||||| ||||| ||| ||||||||||||||||||||
Sbjct: 329 ttcggagatggtcccgtgtccagcctgaaggtgatcacaatgccaa 284
>gb|AJ772733.1|AJ772733 AJ772733 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700012H12F1, mRNA sequence
Length = 251
Score = 40.1 bits (20), Expect = 0.16
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 268 ttctgggaacagatcaaaaccccagggatgtctttgagatgctctgggttatatct 323
||||||||||| |||||||| || || |||||| | | |||||||| ||||||||
Sbjct: 194 ttctgggaacaaatcaaaactcctggaatgtctctaaagtgctctggcttatatct 249
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 128,025
Number of Sequences: 369679
Number of extensions: 128025
Number of successful extensions: 36187
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36153
Number of HSP's gapped (non-prelim): 34
length of query: 1000
length of database: 203,408,664
effective HSP length: 19
effective length of query: 981
effective length of database: 196,384,763
effective search space: 192653452503
effective search space used: 192653452503
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)