BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440612.2.2
(665 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AJ297288.1|PNI297288 Populus nigra microsatellite DNA, ... 42 0.027
gb|BU867176.1|BU867176 S075C03 Populus imbibed seed cDNA li... 40 0.10
gb|BP921975.1|BP921975 BP921975 full-length enriched poplar... 40 0.10
gb|BP923670.1|BP923670 BP923670 full-length enriched poplar... 40 0.10
gb|CV256188.1|CV256188 WS0243.B21_C20 PTxD-ICC-N-A-14 Popul... 38 0.41
gb|DT475572.1|DT475572 WS0127.BR_I14 PT-GT-FL-A-3 Populus t... 38 0.41
gb|DT478567.1|DT478567 WS02523.BR_C07 PT-MB-N-A-15 Populus ... 38 0.41
gb|DT510084.1|DT510084 WS02425.BR_I19 PTxD-ICC-N-A-14 Popul... 38 0.41
gb|DT522084.1|DT522084 WS02036.B21_A07 PTxN-IB-N-A-11 Popul... 38 0.41
gb|DV463733.1|DV463733 MTUNUL1.P19.G03 NUL Populus fremonti... 38 0.41
>emb|AJ297288.1|PNI297288 Populus nigra microsatellite DNA, clone WPMS15
Length = 365
Score = 42.1 bits (21), Expect = 0.027
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 491 gaggaggagcaggaggacgaggacg 515
||||||||| |||||||||||||||
Sbjct: 152 gaggaggaggaggaggacgaggacg 128
>gb|BU867176.1|BU867176 S075C03 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 415
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 348 ttgcactcgccgccggggaa 367
||||||||||||||||||||
Sbjct: 265 ttgcactcgccgccggggaa 246
>gb|BP921975.1|BP921975 BP921975 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-002_C23.f 5', mRNA sequence
Length = 563
Score = 40.1 bits (20), Expect = 0.10
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 486 gcgacgaggaggagcaggaggacgagga 513
|||||||||||||| ||||||| |||||
Sbjct: 89 gcgacgaggaggaggaggaggaggagga 62
>gb|BP923670.1|BP923670 BP923670 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-022_N23.f 5', mRNA sequence
Length = 345
Score = 40.1 bits (20), Expect = 0.10
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 486 gcgacgaggaggagcaggaggacgagga 513
|||||||||||||| ||||||| |||||
Sbjct: 30 gcgacgaggaggaggaggaggaggagga 3
>gb|CV256188.1|CV256188 WS0243.B21_C20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0243_C20 3', mRNA sequence
Length = 763
Score = 38.2 bits (19), Expect = 0.41
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 491 gaggaggagcaggaggacgagga 513
||||||||||||||||| |||||
Sbjct: 700 gaggaggagcaggaggaggagga 678
>gb|DT475572.1|DT475572 WS0127.BR_I14 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0127_I14 5', mRNA sequence
Length = 598
Score = 38.2 bits (19), Expect = 0.41
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 491 gaggaggagcaggaggacgagga 513
||||||||||||||||| |||||
Sbjct: 47 gaggaggagcaggaggaggagga 69
>gb|DT478567.1|DT478567 WS02523.BR_C07 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02523_C07 5', mRNA sequence
Length = 873
Score = 38.2 bits (19), Expect = 0.41
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 488 gacgaggaggagcaggaggacgaggacggga 518
|||||||||||| ||||||| ||||| ||||
Sbjct: 144 gacgaggaggaggaggaggaggaggaaggga 114
>gb|DT510084.1|DT510084 WS02425.BR_I19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02425_I19 5', mRNA sequence
Length = 798
Score = 38.2 bits (19), Expect = 0.41
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 488 gacgaggaggagcaggaggacgaggacggga 518
|||||||||||| ||||||| ||||| ||||
Sbjct: 70 gacgaggaggaggaggaggaggaggaaggga 40
>gb|DT522084.1|DT522084 WS02036.B21_A07 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02036_A07 3', mRNA sequence
Length = 910
Score = 38.2 bits (19), Expect = 0.41
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 491 gaggaggagcaggaggacgagga 513
||||||||| |||||||||||||
Sbjct: 648 gaggaggaggaggaggacgagga 626
>gb|DV463733.1|DV463733 MTUNUL1.P19.G03 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 798
Score = 38.2 bits (19), Expect = 0.41
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 483 gtggcgacgaggaggagcaggaggacgagga 513
|||| |||||||||||| ||||||| |||||
Sbjct: 114 gtggagacgaggaggaggaggaggaggagga 84
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 58,052
Number of Sequences: 369679
Number of extensions: 58052
Number of successful extensions: 17122
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17108
Number of HSP's gapped (non-prelim): 14
length of query: 665
length of database: 203,408,664
effective HSP length: 19
effective length of query: 646
effective length of database: 196,384,763
effective search space: 126864556898
effective search space used: 126864556898
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)